KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:08:31 2014 Check: 00 .. Name: ENSP00000266556/1-468 Len: 473 Check: 2842 Weight: 1.00 Name: ENSBTAP00000019601/1-442 Len: 473 Check: 9782 Weight: 1.00 Name: ENSTTRP00000013717/1-446 Len: 473 Check: 5318 Weight: 1.00 Name: bmy_11504T0/1-440 Len: 473 Check: 5821 Weight: 1.00 Name: BACU018230/1-440 Len: 473 Check: 8138 Weight: 1.00 // 1 50 ENSP00000266556/1-468 MGTQEGWCLL LCLALSGAAE TKPHPAEGQW RAVDVVLDCF LAKDGAHRGA ENSBTAP00000019601/1-442 MGA-EGWCLL LCLAFSGAAN V----AERQW QAVDVVLDCF LMEEGGHHGG ENSTTRP00000013717/1-446 ---------- --------FP A----VERQW RAVDVILDCF LMGEGGHRGA bmy_11504T0/1-440 MGS-EGWCLL VCLALSGAAD A----VERQW RPVDVILDCF LMGEGGHRGG BACU018230/1-440 MGS-EWWCLL VCLALSGAAD A----VERQW RPVDVILDCF LMGEGGHRGG 51 100 ENSP00000266556/1-468 LASSEDRARA SLVLKQVPVL DDGSLEDFTD FQGGTLAQDD PPIIFEASVD ENSBTAP00000019601/1-442 FASSENMVKA VLVLRQVPVP DDGSLEGLTD FQVDTLTKDN SLITFEASVN ENSTTRP00000013717/1-446 FASSENMVKA LLVLKQVPVP DDGSLEGLTD FQGGTLAEDD PLITFEASVN bmy_11504T0/1-440 FASSENMVKA LLVLKQMPVP DDGSLEGLTD FQGGTLAKDD PLITFEASVN BACU018230/1-440 FASSENMVKA LLVLKQVPVP DDGSLEGLTD FQGGTLAKDD PLITFEASVN 101 150 ENSP00000266556/1-468 LVQIPQAEAL LHADCSGKEV TCEISRYFLQ M-TETTVKTA AWFMANMQVS ENSBTAP00000019601/1-442 LVQIPQAEAL LHADCSGKEV TCEISRYFLQ ARPEATVEMA AWFITNVQVS ENSTTRP00000013717/1-446 LIRIPQAEAL LHADCSGKEV TCEISRYFLQ ARPKATVETA AWFITNVLVP bmy_11504T0/1-440 LIQIPQAEAL LHADCSGKEV TCEISRYFLQ ARPKATVETA AWFITNVLVS BACU018230/1-440 LIQIPQAEAL LHADCSGKEV TCEISRYFLQ ARPKATVETA AWFITNVLVS 151 200 ENSP00000266556/1-468 GGGPSISLVM KTPRVTKNEA LWHPTLNLPL SPQGTVRTAV EFQVMTQTQS ENSBTAP00000019601/1-442 GGGPGVSMVM KTLEDAENET VLHPTLKLPL SPQGTVRTAV EFQVTTQTPS ENSTTRP00000013717/1-446 GEGPSISMVM KTLGDAENGA VLHPMLKLPL SPQGTVRTEV EFQVTTQTPS bmy_11504T0/1-440 GEGPSISMVM KTLGDAENGA VLHPMLKLPL SPQGTVRTEV EFQVTTQTPS BACU018230/1-440 GEGPSISMVM KTLGDAENGS VLHPMLKLPL SPQGTVRTEV EFQVTTQSPS 201 250 ENSP00000266556/1-468 LSFLLGSSAS LDCGFSMAPG LDLISVEWRL QHKGRGQLVY SWTA--GQGQ ENSBTAP00000019601/1-442 LNFLLGSTAS LHCGYSVAPG LDVTSVEWRL QHKGSGRLVY HWTM--GQGQ ENSTTRP00000013717/1-446 LNLLLGSSTS LPCGFSMAPG LGITSVEWHR QHKGSGHLVY RWATGQGQGQ bmy_11504T0/1-440 LNLLLGSSAS LDCGFSVAPG LGITSVEWRL QHKGSGQLVY CWTT--GRGQ BACU018230/1-440 LNLLLGSSAS LHCGFSVAPG LGITSVEWRL QHKGSGQLVY CWTT--GRGR 251 300 ENSP00000266556/1-468 AVRKGATLEP AQLGMARDAS LTLPGLTIQD EGTYICQITT SLYRAQQIIQ ENSBTAP00000019601/1-442 AKREGATLEP EQLLTAGDAS LTLPSLTLQD EGAYICQITT SLFRAQQVIQ ENSTTRP00000013717/1-446 AKREGATLEP QQLLMAGDAS LTLPSLTLKD EGTYICEITT SLYRAQQIIQ bmy_11504T0/1-440 AKREGATLEP QQLLMAGDAS LTLPSLTLKD EGAYICQITT SLYRAQQIIQ BACU018230/1-440 AKREGATLEP RQLLQAGDAS LTLPSLTLKD EGAYVCQITT SLYRAQQIIQ 301 350 ENSP00000266556/1-468 LNIQASPKVR LSLANEALLP TLICDIAGYY PLDVVVTWTR EELGGSPAQV ENSBTAP00000019601/1-442 LYIQASPKVR LSLLNAAPPA TLICNVAGYY PLDVSVTWTR EEQGGSPAPV ENSTTRP00000013717/1-446 LNVQAAPKVR LSLASEALPP TLLCSVTGYY PLDVTVTWIR EELGGAPAPV bmy_11504T0/1-440 LNVQAAPKVL LSLASEALPP TLICSVTGYY PLDVTVAWIR EELGGAPAPV BACU018230/1-440 LDVQAAPKVL LSLASEALPP TLICSVTGYY PLDVSVTWIR EELGGDPAPV 351 400 ENSP00000266556/1-468 SGASFSSLRQ SVAGTYSISS SLTAEPGSAG ATYTCQVTHI SLEEPLGAST ENSBTAP00000019601/1-442 SGASLSSLRQ SPAGTYSISS SLTVEPGSAG ATYTCQVTHV SLEEPLGVHA ENSTTRP00000013717/1-446 SGASFSNLRQ SMAGTYSISS SLTAEPGSVG ATYTCQVTHV SLQEPLGANT bmy_11504T0/1-440 SGASFSSLRQ SMAGTYSISS SLTAEPGSVG ATYTCQVTHV SLEEPLGANT BACU018230/1-440 SGASFSSLRQ SVAGTYSISS SLTAEPGSVG ATYTCQVTHV SLEEPLGADT 401 450 ENSP00000266556/1-468 QVVPP--ERR TALGVIFASS LFLLALMFLG LQRRQAPTGL GLLQAERWET ENSBTAP00000019601/1-442 WVAPPVAEQK SALGVLLASI LFVLTLLFLG LQRRQATSP- RSPKTSRHSG ENSTTRP00000013717/1-446 WVAPP--EQR TAFGVLFASS LFLLALLFLG LQRRQAPEE- GLLRAGGWET bmy_11504T0/1-440 WVAPP--EQR TAFGVLFASS LFVLALLFLG LQRRQATSP- RPARTPRHSG BACU018230/1-440 WVAPP--EQR TAFGVLFASS LFLLALLFLG LQRRQATSP- RPARTPRHSG 451 500 ENSP00000266556/1-468 TSCADTQSSH LHEDRTARVS QPS ENSBTAP00000019601/1-442 ---------- ---------- --- ENSTTRP00000013717/1-446 TSSASTQLWN LEDTAPVSPF R-- bmy_11504T0/1-440 ---------- ---------- --- BACU018230/1-440 ---------- ---------- ---