KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:08:32 2014 Check: 00 .. Name: ENSP00000229238/1-128 Len: 355 Check: 2223 Weight: 1.00 Name: ENSBTAP00000019602/1-128 Len: 355 Check: 3129 Weight: 1.00 Name: ENSTTRP00000015245/1-128 Len: 355 Check: 3858 Weight: 1.00 Name: BACU003084/1-345 Len: 355 Check: 127 Weight: 1.00 Name: bmy_11502T0/1-138 Len: 355 Check: 9736 Weight: 1.00 // 1 50 ENSP00000229238/1-128 ---MAGNLLS GAG------- RRLWDWVPLA CRSFSLGVPR LIGIRLTLPP ENSBTAP00000019602/1-128 ---MAGSLSW VAG------- RRLWGLVPLA CRSFFLGVPR LFHVRVTLPP ENSTTRP00000015245/1-128 ---MAGSLSW VVG------- RSLWGQVPLA CRSFSLGVPR LFHVRVTLPP BACU003084/1-345 ---MAGSLSW VAG------- SSLWGQVPLA CRSFSLGVPR LFHVRVTLPP bmy_11502T0/1-138 MRAMAGSLSW VAGSLSLVAG RSLWGQVPLA CRSFSLGVPR LFHVRVTLPP 51 100 ENSP00000229238/1-128 PKVVDRWNEK RAMFGVYDNI GILG------ ---------- ---------- ENSBTAP00000019602/1-128 PKVIDRWNQK RAMFGVYDNI GILG------ ---------- ---------- ENSTTRP00000015245/1-128 RKVVDRWNEK RAMFGVYDNI GILG------ ---------- ---------- BACU003084/1-345 RKVVDRWNEK RAMFGVYDNI GILGKTRLRS AEFQNGSYAV MAIFFHLCRN bmy_11502T0/1-138 RKVVDRWNEK RAMFGVYDNI GILG------ ---------- ---------- 101 150 ENSP00000229238/1-128 ------NFEK HPKELIRGPI WLRGWKGNEL QRCIRKRKMV GSRMFADDLH ENSBTAP00000019602/1-128 ------NFEK HPKELIKGPV WLRGWKGNEL QRCIRKKRMV GNRMFIDDLH ENSTTRP00000015245/1-128 ------NFEK HPKELIKGPI WLRGWKGNEL QRCIRKKRMV GNRMFIDDLH BACU003084/1-345 GTFVNRNFEK HPKELIKGPI WLRGWKGNEL QRCIRKKRMV GNRMFIDDLH bmy_11502T0/1-138 ------NFEK HPKELIKGPI WLRGWNGNEL QRCIRKKRMV GNRMFIDDLH 151 200 ENSP00000229238/1-128 NLNKRIRYLY KHFNRHGKFR ---------- ---------- ---------- ENSBTAP00000019602/1-128 NLNKRISFLY KRFNRHGKHR ---------- ---------- ---------- ENSTTRP00000015245/1-128 NLNKRISYLY KCFNRRGKYR ---------- ---------- ---------- BACU003084/1-345 NLNKRISYLY KCFNRHGKYR LCTPLIPTVT SSPLLVVSEK LQKLICQFPG bmy_11502T0/1-138 NLNKRISYLY KCFNRHGKYR ---------- ---------- ---------- 201 250 ENSP00000229238/1-128 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019602/1-128 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015245/1-128 ---------- ---------- ---------- ---------- ---------- BACU003084/1-345 ARSAPAQPPT EGAEGTAPGG GPPGPPPNMT SNRRLQQTQA QVEEVVDIMR bmy_11502T0/1-138 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000229238/1-128 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019602/1-128 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015245/1-128 ---------- ---------- ---------- ---------- ---------- BACU003084/1-345 VNVDKVLERD QKLSELDDRA DALQAGASQF ESSAAKLKRK YWWKNCKMMI bmy_11502T0/1-138 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000229238/1-128 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019602/1-128 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015245/1-128 ---------- ---------- ---------- ---------- ---------- BACU003084/1-345 MLGAVCAIIV VVINFPICLP PSQPCFSIAH SSPSVAFICA LSYDTGNAAR bmy_11502T0/1-138 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000229238/1-128 ----- ENSBTAP00000019602/1-128 ----- ENSTTRP00000015245/1-128 ----- BACU003084/1-345 GAVLN bmy_11502T0/1-138 -----