KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:08:33 2014 Check: 00 .. Name: ENSP00000325017/1-1401 Len: 1464 Check: 2886 Weight: 1.00 Name: ENSBTAP00000019603/1-1397 Len: 1464 Check: 2601 Weight: 1.00 Name: ENSTTRP00000015251/1-1378 Len: 1464 Check: 574 Weight: 1.00 Name: bmy_11501T0/1-1414 Len: 1464 Check: 2000 Weight: 1.00 Name: BACU018231/1-1400 Len: 1464 Check: 7147 Weight: 1.00 // 1 50 ENSP00000325017/1-1401 MAPQMYEFH- -------LPL S--------- ---PEELLKS GGVNQYVVQE ENSBTAP00000019603/1-1397 MSPQVWEFH- -------LPL S--------- ---PEELLKS GGVNQYVVQE ENSTTRP00000015251/1-1378 ---------- ---------- ---------- ---------- -GVNQYVVQE bmy_11501T0/1-1414 MKPHCQSWRN GGRSALVSPV SHRGKDVSPS VRVPSALVPR GVVEKWRGES BACU018231/1-1400 MSPHLYEFH- -------LPL S--------- ---PEELLKS GGVNQYVVQE 51 100 ENSP00000325017/1-1401 VLSIKHLPPQ LRAFQAAFRA QGPLAMLQHF DTIYSILHHF RSIDPGLKED ENSBTAP00000019603/1-1397 VLSIRHLPSY LKAFQTAFRA QGPLAVLEHF DTIYSILHHF RSIDPGLKED ENSTTRP00000015251/1-1378 VLSIRHLPSR -KAFQAAFRS QGPLAMLEHF DTIYSILXXX XXXXXXXXXX bmy_11501T0/1-1414 V-------CR ARAFQAAFRA QGPLAMLEHF DTIYSILHHF RSIDPGLKED BACU018231/1-1400 VLSIRQLPSH LKAFQAAFRA QGPLAMLEHF DTIYSILHHF RSIDPGLKED 101 150 ENSP00000325017/1-1401 TLQFLIK--- --------VV SRHSQELPAI LDDTTLSGSD RNAHLNALKM ENSBTAP00000019603/1-1397 TLEFLIK--- --------VV SRHSQELPAI LDDAALSVSD RSAHLNALKM ENSTTRP00000015251/1-1378 XXXXXXX--- --------XV SRHTQELPAI LDDATLSGSD RSAHLNALKM bmy_11501T0/1-1414 TLEFLIKGVY GSGILPLAVV SRHSQELPTI LDDATLSGSD RSAHLNALKM BACU018231/1-1400 TLEFLIK--- --------VV SRHSQELPAI LDDATLSGSD RSAHLNALKM 151 200 ENSP00000325017/1-1401 NCYALIRLLE SFETMASQTN LVDLDLGGKG KKARTKAAHG FDWEEERQPI ENSBTAP00000019603/1-1397 NCYALIRLLE SFETTSSQTG LMDVELGGKG RKSRAKATHG FDWEEERQPI ENSTTRP00000015251/1-1378 NCYALICLLE SFETMASQKS LMDLALGGKG RKARAKATHG FDWEEERQPI bmy_11501T0/1-1414 NCYALICLLE SFETMTSQTS LMDLDLGGKG RKARAKATHG FDWEEERQPI BACU018231/1-1400 NCYALICLLE SFETMTSQTS LMDLDLGGKG RKARAKATHG FDWEEERQPI 201 250 ENSP00000325017/1-1401 LQLLTQLLQL DIRHLWNHSI IEEEFVSLVT GCCYRLLENP TINHQKNRPT ENSBTAP00000019603/1-1397 LQLLTQLLQL DIRHLWNHSI IEEEFVSLVT GCCYRLLENP TISHQKNRPT ENSTTRP00000015251/1-1378 LQLLTQLLQL DIRHLWSHSV IEEEFVSLVT GCCYRLLENP TISHQKNRST bmy_11501T0/1-1414 LQLLTQLLQL DIRHLWSHSI IEEEFVCLVT GCCYRLLENP TISHQKNRST BACU018231/1-1400 LQLLTQLLQL DIRHLWSHSI IEEEFVCLVT GCCYRLLENP TISHQKNRST 251 300 ENSP00000325017/1-1401 REAITHLLGV ALTRYNHMLS ATVKIIQMLQ HFEHLAPVLV AAVSLWATDY ENSBTAP00000019603/1-1397 REAITHLLGV ALTRYNHMLS ATVKIIQMLQ HFEHLASILV AAVSLWATDY ENSTTRP00000015251/1-1378 REAITHLLGV ALTRYNHMLS ATVKIIQMLQ HFEHLASVLV AAVSLWATDY bmy_11501T0/1-1414 REAITHLLGV ALTRYNHMLS ATVKIIQMLQ HFEHLASVLV AAVSLWATDY BACU018231/1-1400 REAITHLLGV ALTRYNHMLS ATVKIIQMLQ HFEHLASVLV AAVSLWATDY 301 350 ENSP00000325017/1-1401 GMKSIVGEIV REIGQKCPQE LSRDPSGTKG FAAFLTELAE RVPAILMSSM ENSBTAP00000019603/1-1397 GMKSIVGEIV REIGQKCPQE LSRDPTGAKG FAAFLTELAE RIPAILMSSM ENSTTRP00000015251/1-1378 GMKSIVGEIV REIGQKCPQE LSRDPSGAKG FAAFLTELAE RVPATLMSSV bmy_11501T0/1-1414 GMKSIVGEIV REIGQKCPQE LSRDPSGAKG FAAFLTELAE RVPAILMSSM BACU018231/1-1400 GMKSIVGEIV REIGQKCPQE LSRDPSGAKG FAAFLTELAE RVPAILMSSM 351 400 ENSP00000325017/1-1401 CILLDHLDGE NYMMRNAVLA AMAEMVLQVL SGDQLEAAAR DTRDQFLDTL ENSBTAP00000019603/1-1397 CILLDHLDGE NYMMRNAVLA AMAEMVLQVL SGDQLEAASR DTRDQFLDTL ENSTTRP00000015251/1-1378 CILLDHLDGE NYMMRNAVLA AMAEMVLQVL NGDQLEAAAR DTRDQFLDTL bmy_11501T0/1-1414 CILLDHLDGE NYMMRNAVLA AMAEMVLQVL NGDQLEAAAR DTRDQFLDTL BACU018231/1-1400 CILLDHLDGE NYMMRNAVLA AMAEMVLQVL NGDQLEAAAR DTRDQFLDTL 401 450 ENSP00000325017/1-1401 QAHGHDVNSF VRSRVLQLFT RIVQQKALPL TRFQAVVALA VGRLADKSVL ENSBTAP00000019603/1-1397 QAHCHDVNSF VRSRVLQLFT RIVQQKALPL MRFQAVVALA VGRLADKSVL ENSTTRP00000015251/1-1378 QAHGHDVSSF VRSRVLQLFT RIVQQKALPL TRFQAVVALA VGRLADKSVL bmy_11501T0/1-1414 QAHGHDVSSF VRSRVLQLFT RIVQQKALPL TRFQAVVALA VGRLADKSVL BACU018231/1-1400 QAHGHDVSSF VRSRVLQLFT RIVQQKALPL TRFQAVVALA VGRLADKSVL 451 500 ENSP00000325017/1-1401 VCKNAIQLLA SFLANNPFSC KLSDADLAGP LQKETQKLQE MRAQRRTAAA ENSBTAP00000019603/1-1397 VCKSAIQLLA SFLANNPFSC KLSDTDLAGP LQKETQKLQE MRAQRRATAP ENSTTRP00000015251/1-1378 VCKNAIQLLA SFLANNPFSC KLSDTDLAGP LQKETQKLQE MRAQRRAAAA bmy_11501T0/1-1414 VCKNAIQLLA SFLANNPFSC KLSDTDLAGP LQKETQKLQE MRAQRRAAAA BACU018231/1-1400 VCKNAIQLLA SFLANNPFSC KLSDTDLAGP LQKETQKLQE MRAQRRAAAA 501 550 ENSP00000325017/1-1401 SAVLDPEEEW EAMLPELKST LQQLLQLPQG EEEIPEQIAN TETTEDVKGR ENSBTAP00000019603/1-1397 SAELDPAEEW EAMLPELKAT LQQLLMLPQE GEGMSEGVAE TETPEEVEGR ENSTTRP00000015251/1-1378 SAALDPGEEW EAMLPELKAT LQQLLKLPQE GEGMPEEVAE TETAEEVEGR bmy_11501T0/1-1414 SAVLDPGEEW EAMLPELKAT LQQLLKLPQE GEGMPEEVAE TETAEEVEGR BACU018231/1-1400 SAVLDPGEEW EAMLPELKAT LQQLLKLPQE GEGMPEEVAE TETAEEVEGR 551 600 ENSP00000325017/1-1401 IYQLLAKASY KKAIILTREA TGHFQESEPF SHIDPEESEE TRLLNILGLI ENSBTAP00000019603/1-1397 IRQLLAKASY KQAVILTQEA MGRFQESEPF CHVDPDESEE TRFLSLLGTI ENSTTRP00000015251/1-1378 IRRLLAKASY KQAIILTQEA IGHFQESEPF CHMDPEESEK TAFLNLLGTI bmy_11501T0/1-1414 IRRLLAKASY KQAIILTREA IGHFQESEPF CHMDPEESEK TRFLNLLGTI BACU018231/1-1400 IRRLLAKASY KQAIILTREA IGHFQESEPF CHMDPEESEK TGFLNLLGTI 601 650 ENSP00000325017/1-1401 FKGPAASTQE KNPRESTGNM VTGQTVCKNK PNMSDPEESR GNDELVKQEM ENSBTAP00000019603/1-1397 FKGPAAPTQE ENPQAAAGNL GPGETGCKDK PSGSEPEEC- -SDELVKQEL ENSTTRP00000015251/1-1378 FKGPAAPTQE KNPQGAAGNL GPGETGCKDK PSVSEPEKCR ENDELVKQEM bmy_11501T0/1-1414 FKGPAAPTQE KNPQGAAGNL GPGETGCKDK PSVSEPEKCR ENDELVKQEM BACU018231/1-1400 FKGPAAPTQE NNPQGAAGNL GPGETGCKDK PSVSEPEKCR ENDELVKQEM 651 700 ENSP00000325017/1-1401 LVQYLQDAYS FSRKITEAIG IISKMMYENT TTVVQEVIEF FVMVFQFGVP ENSBTAP00000019603/1-1397 LVQYLQDAHS FSLQITKAIG IISKMMYEHT TTVVQEVIEF FVMVFQFGVP ENSTTRP00000015251/1-1378 LVQYLQDAYS FSLKITEAIG IISKMMYEHT TTVVQEVIEF FVMVFQFGVP bmy_11501T0/1-1414 LVQYLQDAYS FSLKITEAIG IISKMMYEHT TTVVQEVIEF FVMVFQFGVP BACU018231/1-1400 LVQYLQDAYS FSLKITEAIG IISKMMYEHT TTVVQEVIEF FVMVFQFGVP 701 750 ENSP00000325017/1-1401 QALFGVRRML PLIWSKEPGV REAVLNAYRQ LYLNPKGDSA RAKAQALIQN ENSBTAP00000019603/1-1397 QALFGVRRML PLIWSKEPGV RDAVLNAYRQ LYLKPKGDSA RAKAQTLIHN ENSTTRP00000015251/1-1378 QALFGVRRML PLIWSKEPGV REAVLNAYRQ LYLKPKGDSA RAKAQTLIHN bmy_11501T0/1-1414 QALFGVRRML PLIWSKEPGV REAVLNAYRQ LYLKPKGDSA RAKAQTLIHN BACU018231/1-1400 QALFGVRRML PLIWSKEPGV REAVLNAYRQ LYLKPQGDSA RAKAQTLIHN 751 800 ENSP00000325017/1-1401 LSLLLVDASV GTIQCLEEIL CEFVQKDELK PAVTQLLWER ATEKVACCPL ENSBTAP00000019603/1-1397 LSLLLVDASV GTIQCLEEII CEFVQKDELS PAVTQVLWER ATEKVPCSPL ENSTTRP00000015251/1-1378 LSLLLVDASV GTIQCLEEIL CEFVQKDELK PAVTQVLWER ATKKVPCSAL bmy_11501T0/1-1414 LSLLLVDASV GTVQCLEEIL CEFVQKDELK PAVTQVLWER ATKKVPCSPL BACU018231/1-1400 LSLLLVDASV GTVQCLEEIL CEFVQKDELK PAVTQVLWER ATKKVPCSPL 801 850 ENSP00000325017/1-1401 ERCSSVMLLG MMARGKPEIV GSNLDTLVSI GLDEKFPQDY RLAQQVCHAI ENSBTAP00000019603/1-1397 ERCSSVMLLG MMARGKPEIV GSNLDTLVNI GLDEKLPPDY RLAQQVCHAI ENSTTRP00000015251/1-1378 ERCSSVMLLG MMARGKPEIV GSNLDTLVSI GLDEKLPQDY RLAQQVCRAI bmy_11501T0/1-1414 ERCSSVMLLG MMARGKPEIV GSNLDTLVSI GLDEKLPQDY RLAQQVCHAI BACU018231/1-1400 ERCSSVMLLG VMARGKPEIV GSNLDTLVSI GLDEKLPQDY RLAQQVCHAI 851 900 ENSP00000325017/1-1401 ANISDRRK-- ---------- ---------- ---------P SLGKRHPPFR ENSBTAP00000019603/1-1397 ANILDRRK-- ---------- ---------- ---------P SMGERHPPFR ENSTTRP00000015251/1-1378 ANISDRRK-- ---------- ---------- ---------P SLGKRHPPFR bmy_11501T0/1-1414 ANISDRRKVR GVVTSKLRRV RVLLSTLNTH PRCLPCFGQP SLGKRHPPFR BACU018231/1-1400 ANISDRRK-- ---------- ---------- ---------P SLGKRHPPFR 901 950 ENSP00000325017/1-1401 LPQEHRLFER LRETVTKGFV HPDPLWIPFK EVAVTLIYQL AEGPEVICAQ ENSBTAP00000019603/1-1397 LPQEHRLFER LREMVTKGSI HPDPLWVPFK EAAVALIYQL AEGPEVICAR ENSTTRP00000015251/1-1378 LPQEHCLFER LQEMVTKGVV CPDPLWIPFK EAAVTLIYQL AEGPEVXXXX bmy_11501T0/1-1414 LPQEHCLFER LQETVTKGVV RPDPLWIPFK EAAVTLIYQL AEGPEVICAR BACU018231/1-1400 LPQEHCLFER LQETVTKGVV RPDPLWIPFK EAAVTLIYQL AEGPEVICAR 951 1000 ENSP00000325017/1-1401 ILQGCAKQAL EKLEEKRTSQ EDPKESPAML PTFLLMNLLS LAGDVALQQL ENSBTAP00000019603/1-1397 ILQDCAKQAL EKLEEKSDHQ EAPQETPVL- PTFLLMNLLS LAGDVALQQL ENSTTRP00000015251/1-1378 XXXXXXXXXX XXXXXXXXXX XXXXDTPVL- PTFLLMN-LS LAGDVALQQL bmy_11501T0/1-1414 MLQGCAKQAL EKLGEKSTPQ EAPKDTPVL- PAFLLMNLLS LAGDVALQQL BACU018231/1-1400 MLQGCAKQAL EKLGEKSIPQ EAPKDTPVL- PTFLLMNLLS LAGDVALQQL 1001 1050 ENSP00000325017/1-1401 VHLEQAVSGE LCRRRVLREE QEHKTKDPKE KNTSSETTME EELGLVGATA ENSBTAP00000019603/1-1397 VHLEQAVSGE LCRRRVLREE QEHKRKEPKE KNSKSESTLE EEMGLGGATA ENSTTRP00000015251/1-1378 VHLEQAVSGE LCRRRVLREE QEHKTKEPKE KNPSSEATME EEMGLVGATA bmy_11501T0/1-1414 VHLEQAVSGE LCRRRVLREE QEHKTKGPKE KNPSSEATME EEMGLVGATA BACU018231/1-1400 VHLEQAVSGE LCRRRVLREE QEHKTKEPKE KNPSSEATME EEMGLVGATA 1051 1100 ENSP00000325017/1-1401 DDTEAELIRG ICEMELLDGK QTLAAFVPLL LKVCNNPGLY SNPDLSAAAS ENSBTAP00000019603/1-1397 DDTEAELIRG ICELELLEGK QTLAAFVPLL LKVCNNPGLY SNPELSTAAS ENSTTRP00000015251/1-1378 DDTEAELIRG ICELELLDGK QTLAAFVPLL LKVCNNPGLY SNPELSAAAS bmy_11501T0/1-1414 DDTEAELIRG ICELELLD-- ---------- --VCNNPGLY SNPELSAAAS BACU018231/1-1400 DDTEAELIRG ICELELLDGK QTLAAFVPLL LKVCNNPGLY SNPELSAAAS 1101 1150 ENSP00000325017/1-1401 LALGKFCMIS ATFCDSQLRL LFTMLEKSPL PIVRSNLMVA TGDLAIRFPN ENSBTAP00000019603/1-1397 LALGKFCMIS ATFCDSQLRL LFTMLEKSSF PIVRSNLMIA TGDLAIRFPN ENSTTRP00000015251/1-1378 LALGKFCMIS ATFCDSQLRL LFTMLEKSSL PIVRSNLMIA TGDLAIRFPN bmy_11501T0/1-1414 LALAKFCMIG ATFCDSQLRL LFTMLEKSSL PIVRSNLMIA TGDLAIRFPN BACU018231/1-1400 LALGKFCMIS ATFCDSQLRL LFTMLEKSSL PIVRSNLMIA TGDLAIRFPN 1151 1200 ENSP00000325017/1-1401 LVDPWTPHLY ARLRDPAQQV RKTAGLVMTH LILKDMVKVK GQVSEMAVLL ENSBTAP00000019603/1-1397 LVDPWTPHLY ARLRDPSQHV RKTAALVMTH LILKDMVKVK GQVSEMAVLL ENSTTRP00000015251/1-1378 LVDPWTPHLY ARLRDPAQQV RKTAGLVMTH LILKDMVKVK GQVSEMAVLL bmy_11501T0/1-1414 LVDPWTPHLY ARLRDPAQQV RKTAGLVMTH LILKDMVKVK GQVSEMAVLL BACU018231/1-1400 LVDPWTPHLY ARLRDPAQQV RKTAGLVMTH LILKDMVKVK GQVSEMAVLL 1201 1250 ENSP00000325017/1-1401 IDPEPQIAAL AKNFFNELSH KGNAIYNLLP DIISRLSDPE LGVEEEPFHT ENSBTAP00000019603/1-1397 IDPAPQIAAL AKNFFNELSN KANAIYNLLP DIISRLSAPE GGVEEEPFHT ENSTTRP00000015251/1-1378 IDPAPQIAAL AKNFFNELSH KGNAIYNLLP DIISRLSAPE GGVEEEPFHT bmy_11501T0/1-1414 IDPAPQIAAL AKNFFNELSH K--WVGSELP PETAHLHLPS ---------- BACU018231/1-1400 IDPAPQIAAL AKNFFNELSH KGNAIYNLLP DIISRLSAPE GGVEEEPFHT 1251 1300 ENSP00000325017/1-1401 IMKQLLSYIT KDKQTESLVE KLCQRFRTSR TERQQRDLAY CVSQLPLTER ENSBTAP00000019603/1-1397 IMKQLLSYIT KDKQTESLVE KLCQRFRTAQ TERQYRDLAY CVSQLPLTER ENSTTRP00000015251/1-1378 IMKQLLCYIT KDKQTESLVE KLCQRFRTAQ TERQYRDLAY CVSQLPLTER bmy_11501T0/1-1414 -CRQLLSYIT KDKQTESLVE KLCQRFRTAQ TERQYRDLAY CVSQLPLAER BACU018231/1-1400 IMKQLLSYIT KDKQTESLVE KLCQRFRTAQ TERQYRDLAY CVSQLPLTER 1301 1350 ENSP00000325017/1-1401 GLRKMLDNFD CFGDKLSDES IFSAFLSVVG KLRRGAKPEG KAIIDEFEQK ENSBTAP00000019603/1-1397 GLRKMLDNFD CFGDKLSDES IFSAFLSILG KLRRGAKPEG KAVIDEFEQK ENSTTRP00000015251/1-1378 GLRKMLENFD CFGDKLSDES IFSAFLSAVG KLRRGAKPEG KAVIDEFEQK bmy_11501T0/1-1414 GLRKVLENFD CFGDKLSDES IFSAFLS--- ---------- -AVIDEFEQK BACU018231/1-1400 GLRKVLENFD CFGDKLSDES IFSAFLSIVS KLRRGAKPEG KAVIDEFEQK 1351 1400 ENSP00000325017/1-1401 LRACHTRGLD GIKELEIGQA GSQRAPSAKK PSTGSRYQPL ASTASDNDFV ENSBTAP00000019603/1-1397 LRTCHTRGLD TVEELEVGQG SNQRAPSARK QPAAARHRHV ASTASD-DFV ENSTTRP00000015251/1-1378 LRACHTRGLD AIEELEIGQA GSQRAPSARK QPAVSRHRRL ASAASHSDFV bmy_11501T0/1-1414 LRACHTRGLD AIEELEIGQA GSQRAPSARK QPAVSRHRHL ASAASHSDFV BACU018231/1-1400 LRACHTRGLD AIEELEIGQA GSQRAPSARK QPAVSRHRHL ASAASHSDFV 1401 1450 ENSP00000325017/1-1401 TPEPRRTTRR HPNTQQRASK KKPKVVFSSD ESSEEDLSAE MTEDETPKKT ENSBTAP00000019603/1-1397 TPKPRRTTRQ HPNTQQRASR KKLRIVFSSD ESSDEELSAE MTEDETPKKT ENSTTRP00000015251/1-1378 TPEPRRTTRW HPDTQRQVSR KKLRIVFSSD ESSEEEPLAE MTEDETPKKT bmy_11501T0/1-1414 TPEPRRTTRW HPNSQQRVSR KKLRIVFSSD ESSEEEPSAE MTEDETPKKT BACU018231/1-1400 TPEPRRTTRW HPNSQQRVSR KKLRIIFSSD ESSEEEPSAE MTDDETPKKT 1451 1500 ENSP00000325017/1-1401 TPI-LRASAR RHRS ENSBTAP00000019603/1-1397 TPI-RRASAH RHRS ENSTTRP00000015251/1-1378 TPIRRRASAH RHRS bmy_11501T0/1-1414 TPI-RRASAH RHRS BACU018231/1-1400 TPI-RRASTH RHRS