KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:08:34 2014 Check: 00 .. Name: ENSTTRP00000015260/1-853 Len: 1016 Check: 4141 Weight: 1.00 Name: ENSP00000371858/1-845 Len: 1016 Check: 65 Weight: 1.00 Name: ENSBTAP00000019607/1-820 Len: 1016 Check: 1809 Weight: 1.00 Name: bmy_11498T0/1-942 Len: 1016 Check: 7166 Weight: 1.00 Name: BACU003082/1-905 Len: 1016 Check: 1471 Weight: 1.00 // 1 50 ENSTTRP00000015260/1-853 ---------- ---------- ---------- -------MGR KLDPTKKEKR ENSP00000371858/1-845 ---------- ---------- ---------- -------MGR KLDPT-KEKR ENSBTAP00000019607/1-820 ---------- ---------- ---------- -------MGR KLDPTKKEKR bmy_11498T0/1-942 MRETFPWCGV GAPDLGRTWS PAPASEPLLG AGLASSTMGR KLDPTKKEKR BACU003082/1-905 ---------- ---------- ---------- -------MGR KLDPTKKEKR 51 100 ENSTTRP00000015260/1-853 GPGRKARKQK GAETELAKFL PAGGDENFKR LSSRARKRAA RRRLSSAEA- ENSP00000371858/1-845 GPGRKARKQK GAETELVRFL PAVSDENSKR LSSRARKRAA KRRLGSVEAP ENSBTAP00000019607/1-820 GPGRKARKQK GAETELAKFL PAGGDENSKR LSSRARKRAA KRRLGSAEAP bmy_11498T0/1-942 GPGRKARKQK GAETELAKFL PAGGDENLKR LSSRARKRAA RRRLGSAEAP BACU003082/1-905 GPGRKARKQK GAETELARFL PAGSDENVKR LSSRARKRAA RRRLGSAEAP 101 150 ENSTTRP00000015260/1-853 EMNKSPGAKP LPGKLSEGIS AGAVQAPSKK GAPSLFNSAR GKKRPAPTHS ENSP00000371858/1-845 KTNKSPEAKP LPGKLPKGIS AGAVQTAGKK GPQSLFNAPR GKKRPAP--G ENSBTAP00000019607/1-820 ETNKSPGAKP LPGKLPK--- -GAVQTPGKK EALSLFNIAR GKKRPAPTHS bmy_11498T0/1-942 EMNKSSGAKP LPGKLSK--- -GAVQAPSKK GAPSLFNSAR GKKRPAPTHS BACU003082/1-905 EMNKSPGAKP LPGKLSK--- -GAVQAPSKK GAPSLFNSAR GKKRPAPTHS 151 200 ENSTTRP00000015260/1-853 SDEGEEEEDS EEGGVANQGD LWGSEDSDAD MVDDYGADSS SEDEDEDDGA ENSP00000371858/1-845 SDEEEEEEDS EEDGMVNHGD LWGSED-DAD TVDDYGADSN SEDEEEGEAA ENSBTAP00000019607/1-820 S--AEEEEDS EGDGVVNQED LWGSEDSDAG MIDDYGAGSN SEDEDEDDGE bmy_11498T0/1-942 SDEEEEEEDS EEDGVVNQRD LWGSEDSDAD MVDDYGADSN SEDEDEDDGE BACU003082/1-905 SDEEEEEEDS EGDGVVNQGD LWGSEDSDAD MVDDYGADSS SEDEDEDDGE 201 250 ENSTTRP00000015260/1-853 ---------- ---------- ---------- -ELLPIERAA RKQKAQEAVA ENSP00000371858/1-845 GVQWLGLGSL QPPPPGFKQF SCLSFPSSWD LQLLPIERAA RKQKAREAAA ENSBTAP00000019607/1-820 ---------- ---------- ---------- -ELLPIERAA RKQKAQEAVA bmy_11498T0/1-942 ---------- ---------- ---------- -ELLPIERAA RKQKAQEAVA BACU003082/1-905 ---------- ---------- ---------- -ELLPIERAA RKQKAQEAVA 251 300 ENSTTRP00000015260/1-853 GGQWSEEETY EEEEEEKVSS GSGPKEDDEM EGDLQINADE EETFVLSSAG ENSP00000371858/1-845 GIQWSEEETE DEEEEKEVTP ESGPPKVEEA DGGLQINVD- EEPFVLPPAG ENSBTAP00000019607/1-820 GDQWSEAETD EEEEEEQVSA ESGPREDEES EGGLQINVDE EEPFLLPPAG bmy_11498T0/1-942 GGQWSEEETY EEEEEEKVSP ESGPKEDDEM EGDLRINVDE EETFVLPPAG BACU003082/1-905 GGQWSEEETY EEEEEEKVSP ESGPKEDDEM EGDLRINVDE EETFVLPPAG 301 350 ENSTTRP00000015260/1-853 EMEQD----- ---------- ---------- -------AQV PDLQRVHKRI ENSP00000371858/1-845 EMEQD----- ---------- ---------- -------AQA PDLQRVHKRI ENSBTAP00000019607/1-820 EVEQD----- ---------- ---------- -------TQA PDLQRVHKRI bmy_11498T0/1-942 EMEQDILLVQ GELEGDAWEK AFPGPRKSGS SSLTGPRAQV PDLQRVHKRI BACU003082/1-905 EMEQDILLVQ GEPEGDAWEK ALPGPRKSGS SSLTGPHAQV PDLQRVHKRI 351 400 ENSTTRP00000015260/1-853 QDIVGVLRDF GTQREEGRSR SEYLQRLRKD LATYYSYGDF LLGKLMDLFP ENSP00000371858/1-845 QDIVGILRDF GAQREEGRSR SEYLNRLKKD LAIYYSYGDF LLGKLMDLFP ENSBTAP00000019607/1-820 QDIVGVLRDF GTQREEGRSR SEYLQRLRKD LATYYSYGDF LLGKLMDLFP bmy_11498T0/1-942 QDIVGVLRDF GTQREEGRSR SEYLQRLRKD LATYYSYGDF LLGKLMDLFP BACU003082/1-905 QDIVGVLRDF GTQREEGRSR SEYLQRLRKD LATYYSYGDF LLGKLMDLFP 401 450 ENSTTRP00000015260/1-853 LSELVEFLEA NEVPRPITLR TNTLKTRRRD LAQ------- ---PLGKWSK ENSP00000371858/1-845 LSELVEFLEA NEVPRPVTLR TNTLKTRRRD LAQALINRGV NLDPLGKWSK ENSBTAP00000019607/1-820 LSELVEFLEA NEVPRPITLR TNTLKTRRRD LAQALINRGV NLDPLGKWSK bmy_11498T0/1-942 LSELVEFLEA NEVPRPITLR TNTLKTRRRD LAQALINRGV NLDPLGKWSK BACU003082/1-905 LSELVEFLEA NEVPRPITLR TNTLKTRRRD LAQALINRGV NLDPLGKWSK 451 500 ENSTTRP00000015260/1-853 TGLVVYDSSV PIGATPEYLA GHYMLQGASS MLPVMALAPQ EHERILDMCC ENSP00000371858/1-845 TGLVVYDSSV PIGATPEYLA GHYMLQGASS MLPVMALAPQ EHERILDMCC ENSBTAP00000019607/1-820 TGLVVYDSSV PIGATPEYLA GHYMLQGASS MLPVMALAPQ EHERILDMCC bmy_11498T0/1-942 TGLVVYDSTV PIGATPEYLA GHYMLQGASS MLPVMALAPQ EHERILDMCC BACU003082/1-905 TGLVVYDSSV PIGATPEYLA GHYMLQGASS MLPVMALAPQ EHERILDMCC 501 550 ENSTTRP00000015260/1-853 APGGKTSYIA QLMKNTGVIL ANDANAERLR SVVGNLHRLG VTNTVISHYD ENSP00000371858/1-845 APGGKTSYMA QLMKNTGVIL ANDANAERLK SVVGNLHRLG VTNTIISHYD ENSBTAP00000019607/1-820 APGGKTSYIA QLMKNTGVIL ANDANAERLK SVVGNLHRLG VTNAIISHYD bmy_11498T0/1-942 APGGKTSYIA QLMKNTGVIL ANDANAERLR SVVGNLHRLG VTNTVISHYD BACU003082/1-905 APGGKTSYIA QLMKNTGVIL ANDANAERLR SVVGNLHRLG VTNTVISHYD 551 600 ENSTTRP00000015260/1-853 GRQFPKVVGG FDRVLLDAPC SGTGIISKDP AVKTNK---- ---------- ENSP00000371858/1-845 GRQFPKVVGG FDRVLLDAPC SGTGVISKDP AVKTNK---- ---------- ENSBTAP00000019607/1-820 GRQFPKVVGG FDRVLLDAPC SGTGVISKDP AVKTNK---- ---------- bmy_11498T0/1-942 GRQFPKVAGG FDRVLLDAPC SGTGIISKDP AVKTNKVQGL GDQLKSLGGR BACU003082/1-905 GRQFPKVVGG FDRVLLDAPC SGTGIISKDP AVKTNKVQGV GDQLKSLGGT 601 650 ENSTTRP00000015260/1-853 ---------- ---------- ---------- ----DEKDIL RCAHLQKELL ENSP00000371858/1-845 ---------- ---------- ---------- ----DEKDIL RCAHLQKELL ENSBTAP00000019607/1-820 ---------- ---------- ---------- ----DEKDIL RCAHLQKELL bmy_11498T0/1-942 GAGEAEWEVG SQQLTSPEAT LRSSHAVGLF MLGQDEKDIL RCARLQKELL BACU003082/1-905 GAGKAEWEVG SQQLTSPEAT LRNSHAVGLS VLGQDEKDIL RCAHLQKELL 651 700 ENSTTRP00000015260/1-853 LSAIDSVSAT SKTGGYLVYC TCSIMVEENE WVVDYALRKR NVRLVPTGLD ENSP00000371858/1-845 LSAIDSVNAT SKTGGYLVYC TCSITVEENE WVVDYALKKR NVRLVPTGLD ENSBTAP00000019607/1-820 LSAIDSVNAT SKTGGYLVYC TCSIMVEENE WVVDYALKKR NVRLVPTGLD bmy_11498T0/1-942 LSAIDSVSAA SQTGGCLVYC TCSVMVEENE WVVDYALRKR NVRLVPTGLD BACU003082/1-905 LSAIDSVSAT SKTGGYLVYC TCSIMVEENE WVVDYALRKR NVRLVPTGLD 701 750 ENSTTRP00000015260/1-853 FGQEGFTRFR ERRFHPTLRS TRRFYPHTHN VDGFFIAKFK KFSNSIPQSQ ENSP00000371858/1-845 FGQEGFTRFR ERRFHPSLRS TRRFYPHTHN MDGFFIAKFK KFSNSIPQSQ ENSBTAP00000019607/1-820 FGQEGFTRFR ERRFHPTLRS TRRFYPHTHN MDGFFIAKFK KFSNSIPQSQ bmy_11498T0/1-942 FGQEGFTRFR ERRFHPTLRS TRRFYPHTHN VDGFFIAKFK KFSNSIPQSQ BACU003082/1-905 FGQEGFTRFR ERRFHPTLRS TRRFYPHTHN VDGFFIAKFK KFSNSIPQSQ 751 800 ENSTTRP00000015260/1-853 TXXXXXXXXX XXXXX----X XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000371858/1-845 TGNSETATPT NVDLP----Q VIPKSENSSQ PAKKAKGAAK TKQQLQKQQH ENSBTAP00000019607/1-820 TGNSATSTPT NPDLPNVNGQ VTPKSESGSP STKK---AGQ AKQRLQKQQH bmy_11498T0/1-942 TGNSVISTLT NLDLPNLKGQ VTPQPESSSL PAKKARVAGQ AKQRLQKRQH BACU003082/1-905 TGNSVISTLT NLDLPNLKGQ VTPQPECSSL PAKKARVAGQ AKQRLQKRQH 801 850 ENSTTRP00000015260/1-853 XXXXXXXXXX XXSRGTNSEV CTVFSVTKAQ ASSKLQDSSQ PAEKAAGVRE ENSP00000371858/1-845 PKKASFQKLN GISKGADSEL STVPSVTKTQ ASSSFQDSSQ PAGKAEGIRE ENSBTAP00000019607/1-820 PKKSSFQKQN GISKGTDTEL STVSAVTKAQ ASSKLQDSSQ PPETAAVVRE bmy_11498T0/1-942 PKKASFQKQN GISKGTGSEL STVFSVTKAQ ASSKLQDSSQ PAEKAAVVRE BACU003082/1-905 PKKASFQKQN GISKGTDSEL STVFSVTKAQ ASSKLQDSSQ PAEKAAVVRK 851 900 ENSTTRP00000015260/1-853 PKVAGKLQQQ SPELQSSKKA AFRKRHAPPK GTCTETPAVP SLSKTQATLK ENSP00000371858/1-845 PKVTGKLKQR SPKLQSSKKV AFLRQNAPPK GTDTQTPAVL SPSKTQATLK ENSBTAP00000019607/1-820 PKEAGKLKQH SPKLQSSRKA AFRKQHAPPK AMDTDLPAAP SLSKTQATPK bmy_11498T0/1-942 PKVAGKLKQQ SPKLQSSKKA AFRKQRAAPK GTYAETPAAP SLSKAQATLK BACU003082/1-905 PKVSGKLKQQ SPKLQSSKKA AFRKQRAAPK GTYTETPAAP SLSKTQAALK 901 950 ENSTTRP00000015260/1-853 PEDRGQPLGN TTGAEEVKQR VPEQPLKKAA FQKQNGTPKG RLQSCPPTGG ENSP00000371858/1-845 PKDHHQPLGR AKGVE--KQQ LPEQPFEKAA FQKQNDTPKG PQPPTVSPIR ENSBTAP00000019607/1-820 PEDRDQPFGN TTGAEKVKQQ VAEQPFKKAA FQKQNGTPKG PKTPTMSSCS bmy_11498T0/1-942 PEDRDQPLGN TTGAEEVKQQ VPEQPFKKAA FQKQNGTRKG PKTPIMSPRS BACU003082/1-905 PEDRDQPLGN ATGAEEVKQQ VPEQPFKKAA FQKQNGTRKG PKTPIMSPRS 951 1000 ENSTTRP00000015260/1-853 VTAGPHQQRG ENLCPEAAAS PCCLRWMGTI RVAHCHCYWV GTLTSVRMAS ENSP00000371858/1-845 SSRPPPAKRK KSQSRGN--- ---------- ---------- --------SQ ENSBTAP00000019607/1-820 SSQPPPAKRR KSQSRGG--- ---------- ---------- --------RQ bmy_11498T0/1-942 YSRPPPAKRR KSLSGGG--- ---------- ---------- --------SQ BACU003082/1-905 YSRPPPAKRR KSLSRGG--- ---------- ---------- --------SQ 1001 1050 ENSTTRP00000015260/1-853 PLGMKFNTHF TISGCC ENSP00000371858/1-845 LLLS------ ------ ENSBTAP00000019607/1-820 PALTSVDG-- ------ bmy_11498T0/1-942 PLLSSMDG-- ------ BACU003082/1-905 PLLSSMDG-- ------