KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:08:35 2014 Check: 00 .. Name: BACU003775/1-282 Len: 317 Check: 3920 Weight: 1.00 Name: ENSP00000006015/1-313 Len: 317 Check: 9929 Weight: 1.00 Name: bmy_19816T0/1-315 Len: 317 Check: 1686 Weight: 1.00 Name: ENSTTRP00000003260/1-311 Len: 317 Check: 5187 Weight: 1.00 Name: ENSBTAP00000019611/1-315 Len: 317 Check: 3152 Weight: 1.00 // 1 50 BACU003775/1-282 ----MPRPSG AEEARNPPGQ W--KDVDFFR SLGTLEIEP- ---------- ENSP00000006015/1-313 -MDFDERGPC SSNMYLPSCT YYVSGPDFSS LPSFLPQTPS SRPMTYSYSS bmy_19816T0/1-315 MMDFDERGPC SSNMYLPSCT YYVSGPDFSS LPSFLPQTPS SRPMTYSYSS ENSTTRP00000003260/1-311 -MDFDERGPC SSNMYLPSCT YYVSGPDFSS LPSFLPQTPS SRPMTYSYSS ENSBTAP00000019611/1-315 -MDFDERGPC SSNMYLPSCT YYVSGPDFSS LPSFLPQTPS SRPMTYSYSS 51 100 BACU003775/1-282 ----VQPVRE VTFREYAIEP ATKWHPRGNL AHCYSAEELV HRDCLQAPSA ENSP00000006015/1-313 NLPQVQPVRE VTFREYAIEP ATKWHPRGNL AHCYSAEELV HRDCLQAPSA bmy_19816T0/1-315 NLPQVQPVRE VTFREYAIEP ATKWHPRGNL AHCYSAEELV HRDCLQAPSA ENSTTRP00000003260/1-311 NLPQVQPVRE VTFREYAIEP ATKWHPRGNL AHCYSAEELV HRDCLQAPSA ENSBTAP00000019611/1-315 NLPQVQPVRE VTFREYAIEP ATKWHPRGNL AHCYSAEELV HRDCLQAPSA 101 150 BACU003775/1-282 AGVPGDVLAK SSANVYHHPT PAVSSNFYST VGRNGVLPQA FDQFFETAYG ENSP00000006015/1-313 AGVPGDVLAK SSANVYHHPT PAVSSNFYST VGRNGVLPQA FDQFFETAYG bmy_19816T0/1-315 AGVPGDVLAK SSANVYHHPT PAVSSNFYST VGRNGVLPQA FDQFFETAYG ENSTTRP00000003260/1-311 AGVPGDVLAK SSANVYHHPT PAVSSNFYST VGRNGVLPQA FDQFFETAYG ENSBTAP00000019611/1-315 AGVPGDVLAK SSANVYHHPT PAVSSNFYST VGRNGVLPQA FDQFFETAYG 151 200 BACU003775/1-282 TPENLASSDY PGDKSAEKGP PAAAATS--A AAAAAAATGT PATSNP---- ENSP00000006015/1-313 TPENLASSDY PGDKSAEKGP PAATATS--- AAAAAAATGA PATSSSDSGG bmy_19816T0/1-315 TPENLASSDY PGDKSAEKGP PAAAATS-AA AAAAAAATGT PATSSSDS-G ENSTTRP00000003260/1-311 TPENLASSDY PGDKSAEKGP PAAAATS--- AAAAAAATGT PATSSSDS-G ENSBTAP00000019611/1-315 TPENLASSDY PGDKSAEKGP PAAAATSAAA AAAAAAATGT PATSSSDS-G 201 250 BACU003775/1-282 --------AA APDVNEGRVP PQPGKTGAGA AFTASGTGRP GGQRTRKKRC ENSP00000006015/1-313 GGGCRETAAA AEEKERRRRP ESSSSPESSS GHTEDKAGGS SGQRTRKKRC bmy_19816T0/1-315 AGGCREAAAA AEEKERRRRP ESSSSPESSS GHTEDKAGGS SGQRTRKKRC ENSTTRP00000003260/1-311 AGGCREAAAA AEEKERRRRP ESSSSPESSS GHTEDKAGGS SGQRT-KKRC ENSBTAP00000019611/1-315 AGGCREAAAA AEEKERRRRP ESSSSPESSS GHTEDKAGGS SGQRTRKKRC 251 300 BACU003775/1-282 PYTKYQIREL EREFFFSVYI NKEKRLQLSR MLNLTDRQVK IWFQNRRMKE ENSP00000006015/1-313 PYTKYQIREL EREFFFSVYI NKEKRLQLSR MLNLTDRQVK IWFQNRRMKE bmy_19816T0/1-315 PYTKYQIREL EREFFFSVYI NKEKRLQLSR MLNLTDRQVK IWFQNRRMKE ENSTTRP00000003260/1-311 PYTKYQIREL EREFFFSVYI NKEKRLQLSR MLNLTDRQVK IWFQNRRMKE ENSBTAP00000019611/1-315 PYTKYQIREL EREFFFSVYI NKEKRLQLSR MLNLTDRQVK IWFQNRRMKE 301 350 BACU003775/1-282 KKINRDRLQY YSANPLL ENSP00000006015/1-313 KKINRDRLQY YSANPLL bmy_19816T0/1-315 KKINRDRLQY YSANPLL ENSTTRP00000003260/1-311 KKINRDRLQY YSANPLL ENSBTAP00000019611/1-315 KKINRDRLQY YSANPLL