KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:08:44 2014 Check: 00 .. Name: ENSP00000417470/1-782 Len: 842 Check: 4697 Weight: 1.00 Name: ENSBTAP00000019646/1-705 Len: 842 Check: 2491 Weight: 1.00 Name: bmy_20290T0/1-750 Len: 842 Check: 9032 Weight: 1.00 Name: ENSTTRP00000014855/1-685 Len: 842 Check: 9779 Weight: 1.00 // 1 50 ENSP00000417470/1-782 MAEPPR---L PLTFEDVAIY FSEQ------ ---------- ---------- ENSBTAP00000019646/1-705 PAE------L PLTFEDVAIY FSEQ------ ---------- ---------- bmy_20290T0/1-750 MAEPAPVRGL PARTSGSGIW AGPRVPARRA GILGSSQGGG GRVGRGLRVA ENSTTRP00000014855/1-685 ---------L PLTFEDVAVY FSEQ------ ---------- ---------- 51 100 ENSP00000417470/1-782 --EW------ ---QDLEAWQ KELYKHVMRS NYET----LV SLDDGLPKPE ENSBTAP00000019646/1-705 --EW------ ---QNLEAWQ KELYKQVMRA NYEI----LL SLDNGLPKPE bmy_20290T0/1-750 LSAWCGVWTL DGAGDRRPWG SSVSKALNKA ERGTGGVWAA GAYDGLPKPE ENSTTRP00000014855/1-685 --EW------ ---RDLEPWQ KELYKQVMRT NYEI----LV SLDDGLPKPE 101 150 ENSP00000417470/1-782 LISWIEHGGE PFRKWRESQK SGNIICSSVD MHFDPGFEEQ LFWGSQQAMN ENSBTAP00000019646/1-705 LISWIEQGRE LFKKWGESQE SRNIICSAAD LHFDPLIEGQ PFSENQQAVS bmy_20290T0/1-750 LISWLEQGRE LFRNWGESQK SGNIICSSAD LHLDPVIEGQ LFGGSQQAVK ENSTTRP00000014855/1-685 LISWLEQGRE LFRIWGESQK SGNIICTSAD LHLDPVIEGQ LFVGSQQAVK 151 200 ENSP00000417470/1-782 SGKTKSHFQL DP-ESQCSFG SF------VS FRPDQGITLG SPQRHDARAP ENSBTAP00000019646/1-705 SEEAHYYFQV DPLQSHRSCK PLSEKSEDVS FRPDQAVALV NPQRPNTWAL bmy_20290T0/1-750 PGEAHCHFQV DPLQSQRSSE PFLGKSEDVS FRPDQVVALL NPHRHDTRAX ENSTTRP00000014855/1-685 PGEAHCHFQV DPLQSQRSSE PF------VS FRPDQVVALL NPQRHDTRAL 201 250 ENSP00000417470/1-782 PPLACGPSES TLKEGIPGPR NLDLPGLWDV PAWESTQHPW PVCGESCWEN ENSBTAP00000019646/1-705 LPAVHSSREP TQRDKIASPR ALGIPGFQKT ASGEGLQQSC AFCGESFWNE bmy_20290T0/1-750 GPLVHSSREP TRRDRIVSPR TLGLPGFQET -SGEGLQHPC PVCGEGFWK- ENSTTRP00000014855/1-685 VPVVHSSREP TQRDTVVSPR TLGPPGFQET -SGEGLQHPC PVCGEGFWK- 251 300 ENSP00000417470/1-782 NHLVMHQRGH SKDRTRRAWE KFNKRAETQM PWSSPRVQRH FRCGVCGKSF ENSBTAP00000019646/1-705 DLLEWHQGSH SKA-----WK QLSKQPEAQQ ----LRSQTH FRCPGCGRGF bmy_20290T0/1-750 NLSEQHQGSH SKDPPHRAWH QFRNQTEVQQ PLSIPLGQRH FRCPECGRGF ENSTTRP00000014855/1-685 NLSEQHQGSH SKGLLHRAWN QFRKQTEAQQ PLSIPRGQRH FRCPECGRGF 301 350 ENSP00000417470/1-782 RRKLCLLRHL AAHTGRGPFR NADGEMCFRH ELTHPSHRLP QQGEKPAQCT ENSBTAP00000019646/1-705 RRKPHLLSPL AVRAEESRPL GLESEETCGH RVTPP----- ----RPSPYP bmy_20290T0/1-750 RRKSCLLRPL ATHREESQLA GSECEMYAHH LRAGP----- ----RPSQCP ENSTTRP00000014855/1-685 RRKSCLLRPL SIHPDESQLL GSECEVYAHH LRAGS----- ----RPSQCP 351 400 ENSP00000417470/1-782 PCGKRSLPVD STQARRCQHS REGPASWREG RGASSSV--- -HS----GQK ENSBTAP00000019646/1-705 GCDEG----- ---ASRGPPG MERPVSPREG AGAASEQDEL PPSSNLAGQK bmy_20290T0/1-750 GCDER----- ---GPRGPPG VERPGSRREG ARAASEQAEL PRS----GEK ENSTTRP00000014855/1-685 GCDE------ ----ARGPPG AEKPGSRREG AGAASSL--- -RS----GEK 401 450 ENSP00000417470/1-782 PGSRLPQEGN SHQEGDTE-A LQHGAEGPCS CSECGERSPM SARLASPCRA ENSBTAP00000019646/1-705 CG-------- -RWAGGPE-A LKPGP----- ---------- ---------- bmy_20290T0/1-750 PG------LS PAGEERPE-S LEPGP----- ---------- ---------- ENSTTRP00000014855/1-685 PG-------- -LIQGESARA LEPGP----- ---------- ---------- 451 500 ENSP00000417470/1-782 HTGEKPFQCA HCTKRFRLRR LLQVHQHAHG GERPFSCRKC GKGFAKQCKL ENSBTAP00000019646/1-705 ---------- ---------- ---------G GERPSSYGAC SRRPSQRCRL bmy_20290T0/1-750 ---------- ---------- ---------G AERPASCGPC GRRSSPQCGL ENSTTRP00000014855/1-685 ---------- ---------- ---------G AERPA-CGPC GQRSSPQCGL 501 550 ENSP00000417470/1-782 TEHIRVHSGE KPFRCAKCGR NFRQRGQLLR HQRLHTDEKP FQCPECGLSF ENSBTAP00000019646/1-705 SDHTHVHRAE RPCRCAECGR AFRQRGRLRL HRQPPSHEPP CTGPECGLGF bmy_20290T0/1-750 PGHTHVHSAE RPFRCAECGR ASRQRGRLRL HRRLHSDEQP FACPECGLGF ENSTTRP00000014855/1-685 PDHTHVHSAE RPFRCAECGR ASRQHGRLRL HRRLQSEEQP FACPECGLGF 551 600 ENSP00000417470/1-782 RLESMLRAHR LRHGGERPFS CSECGRGFTH QCKLREHLRV HSGERPFQCL ENSBTAP00000019646/1-705 RLRSALQAHG LRHGGERPLA CDECGRGFAH PCKLREHLRV HSGERPFCCA bmy_20290T0/1-750 RLR------- -RHGGERPLS CGECGRGFAH PCKLREHLRV HSGERPFGCP ENSTTRP00000014855/1-685 RLR------- -RHGGERPLS CGECGRDFAH PCKLREHLRV HSGERPFGCP 601 650 ENSP00000417470/1-782 KCDKRFRLKG ILKAHQHTHS KERPFSCGEC GKGFTRQSKL TEHLRVHSGE ENSBTAP00000019646/1-705 ECGKSFRLKG ILKAHERTHS RERPFQCAEC GRGFTRPSKL AEHFRVHSGE bmy_20290T0/1-750 ECGKSFRLKG ILKAHERTHS RERPFQCAEC GKGFTRPSKL AEHFRVHSGE ENSTTRP00000014855/1-685 ECGKSFRLKG ILKAHERTHS RERPFQCAEC GKGFTRPSKL AEHFRVHSGE 651 700 ENSP00000417470/1-782 RPFQCPECNR SFRLKGQLLS HQRLHTGERP FQCPECDKRY RVKADMKAHQ ENSBTAP00000019646/1-705 RPFSCVDCGR RFRLQGQLRS HRRLHTGERP FPCPDCGKSY RVKADLKAHQ bmy_20290T0/1-750 RPFGCPDCGR RFRLKGQLRS HQRLHTGERP FPCPDCGKSY RVKADMKAHR ENSTTRP00000014855/1-685 RPFGCPDCSR RFRLKGQLRS HQRLHTGERP FPCPDCGKSY RVKADMKAHR 701 750 ENSP00000417470/1-782 LLHSGEMPFS CECGKGFVKH SKLIEHIRTH TGEKPFQCPK CDKSFRLKAQ ENSBTAP00000019646/1-705 LLHGGPMPFS CECGKGFAKQ SKLVEHVRTH TGEKPFQCPQ CDKRFRLKAQ bmy_20290T0/1-750 LLHGGRMPFS CECGKGFAKQ SKLVEHIRTH TGEKPFQCPQ CDKSFRLKAQ ENSTTRP00000014855/1-685 LLHGGRMPFS CECGKGFAKQ SKLVEHIRTH TGEKPFQCPQ CDKSFRLKAQ 751 800 ENSP00000417470/1-782 LLSHQGLHTG ERPFHCPECD KNFRERGHML RHQRIHRPER PFACGDCGKG ENSBTAP00000019646/1-705 LLSHQGLHTG ERPFRCPECD KNFRERGHML RHQRIHRPDR PFACADCGKG bmy_20290T0/1-750 LLSHQGLHTG ERPFRCPECN KNFRERGHML RHQRIHRPDR PFACADCGKG ENSTTRP00000014855/1-685 LLSHQGLHTG ERPFRCPECN KNFRERGHML RHQRIHSPDR PFACADCGKG 801 850 ENSP00000417470/1-782 FIYKSKLAEH IRVHTKSCPA PNELDIKKRL SQLFAMIEAD WS ENSBTAP00000019646/1-705 FIYKSKLAEH VRVHTKSCRV RREPDVKKRL SQLFEMIEAD WS bmy_20290T0/1-750 FIYKSKLAEH IRVHTKSCRG PSEPDVKQRL SQLFAMIEAD WS ENSTTRP00000014855/1-685 FIYKSKLAEH IRVHTKSCRA PSEPDVKQRL SQLFAMIEAD WS