KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:08:46 2014 Check: 00 .. Name: ENSP00000471252/1-1146 Len: 1170 Check: 8631 Weight: 1.00 Name: ENSTTRP00000001597/1-792 Len: 1170 Check: 1071 Weight: 1.00 Name: ENSBTAP00000019653/1-1117 Len: 1170 Check: 2563 Weight: 1.00 Name: bmy_15837T0/1-1036 Len: 1170 Check: 4349 Weight: 1.00 Name: BACU002614/1-954 Len: 1170 Check: 9731 Weight: 1.00 // 1 50 ENSP00000471252/1-1146 --MKTLRARF KKTELRLSPT DLGSCPPCGP CPIPKP-AAR GRR------- ENSTTRP00000001597/1-792 --GHLGARPP APGALD-TMK QLCLCAAASL AXXX------ ---------- ENSBTAP00000019653/1-1117 --MDAPTQDH FPRQLRLSPT DLGSCPPCGP CPIPKPAAAR GRR------- bmy_15837T0/1-1036 MLSQAPTQDH SPRQLRLSPT DLGSCPPCGP CPIPKP-AAR GRRQAIPCSP BACU002614/1-954 --MDAQVAWG EEKHLTLAMK TL-------- -------RAR FKKT------ 51 100 ENSP00000471252/1-1146 ----QSQDWG KSDERLLQAV ENNDAPRVAA LIARKGLVPT KLDPEGKSAF ENSTTRP00000001597/1-792 --------XX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000019653/1-1117 ----QSQDWG KSDERLLQAV ENNDPTRVAS LIARKGLVPT KLDPEGKSAF bmy_15837T0/1-1036 GCAPQSQDWG KSDERLLQAV ENNDAARVAS LIARKGLVPT KLDPEGKSAF BACU002614/1-954 ----ESQDWG KSDERLLQAV ENNDAARVAS LIARKGLVPT KLDPEGKSAF 101 150 ENSP00000471252/1-1146 HLAAMRGAAS CLEVMIAHGS NVMSADGAGY NALHLAAKYG HPQCLKQLLQ ENSTTRP00000001597/1-792 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXY SALHLAAKYG HPQCLKQLLQ ENSBTAP00000019653/1-1117 HLAAMRGAAS CLEVMLAHGA NAMSTDGAGY NALHLAAKYG HPQCLKQLLQ bmy_15837T0/1-1036 HLAAMRGAAS CLEVMLTHGA NVMSTDGAGY SALHLAAKYG HPQCLKQLLQ BACU002614/1-954 HLAAMRGAAS CLEVMLTHGA NVMSTDGAGY SALHLAAKYG HPQCLKQLLQ 151 200 ENSP00000471252/1-1146 ASCVVDVVDS SGWTALHHAA AGGCLSCSEV LCSFKAHLNP QDRSGATPLI ENSTTRP00000001597/1-792 ASCVVDTVDS SGWTALHHAA AGGCVSCSEM LCSFKAHLNP RDRLGTTPLI ENSBTAP00000019653/1-1117 ASCAVDTVDS SGWTALHHAA AGGCISCSEM LCSFKAHLNP RDRLGTTPLI bmy_15837T0/1-1036 ASCVVDTVDS SGWTALHHAA AGGCMSCSEM LCSFKAHLNP RDRLGTTPLI BACU002614/1-954 ASCVVDTVDS SGWTALHHAA AGGCISCSEM LCSFKARLNP RDRLGTTPLI 201 250 ENSP00000471252/1-1146 IAAQMCHTDL CRLLLQQGAA ANDQDLQGRT ALMLACEGAS PETVEVLLQG ENSTTRP00000001597/1-792 IAAQMCHTDL CRLLLQQGAA ANDQDLQGRT ALMLACEGAS PETVEVLLQG ENSBTAP00000019653/1-1117 IAAQMCHTDL CRLLRILAPS AASSS--GRT ALMLACEGAS PETVEVLLQG bmy_15837T0/1-1036 IAAQMCHTDL ---------- ---------T ALMLACEGAS PETVEVLLQG BACU002614/1-954 IAAQMCHTDL CRLLLQQGAA ANDQDLQGRT ALMLACEGAS PETVEVLLQG 251 300 ENSP00000471252/1-1146 GAQPGITDAL GQDAAHYGAL AGDKLILHLL QEAAQRPSPP SALTEDDSGE ENSTTRP00000001597/1-792 GAQPGITDAL GQDAAHYGAL AGDKLILHLL QEAAQRPSAP SALPEDDSGE ENSBTAP00000019653/1-1117 GAQPGITDAL GQDAAHYGTL AGDKLILHLL QEAAQRPSPP SALAEDDSGE bmy_15837T0/1-1036 GAQPGITDAL GQDAAHYGAL AGDKLILHLL QEAAQRPSPP SGMQTPPLNS BACU002614/1-954 GAQPGITDAL GQDAAHYGAL AGDKLILHLL QEAAQRPSPP S---EDDSGE 301 350 ENSP00000471252/1-1146 ASSQNSMSSH GKQGAPKKRK APPPPASIPM PDDRDAYEEI VRLRQERGRL ENSTTRP00000001597/1-792 ASSQNSVSSH EKQGAPKKRK APQPPANIPM PDDQDAYEEI VRLRQERGRL ENSBTAP00000019653/1-1117 ASSQNSVSSH DKQGAPKKRK APQPPINIPM PDDQDAYEEI VRLRQERGRL bmy_15837T0/1-1036 FEHPPPSSSH EKQGAPKKRK APQPPANIPM PDDQDAYEEI VRLRQERGRL BACU002614/1-954 ASSQNSVSSH EKQGAPKKRK APQPPANIPM PDDQDAYEEI VRLRQERGRL 351 400 ENSP00000471252/1-1146 LQKIRGLEQH KERRQQESP- -EASSLHILE RQVQELQQLL VERQEEKESL ENSTTRP00000001597/1-792 LQKIRGLEQN QERKKQELPE AEASSLHSLE RQVQELQQLL AERQEEKESL ENSBTAP00000019653/1-1117 LQKIRGLEQH QERRKQELPE AEASSLHSLE RQVQELQQLL AEKQEEKESL bmy_15837T0/1-1036 LQKIRGLEQH QERRKQE--- ---------- --VQELQQLL AEKQEEKESL BACU002614/1-954 LQKIRGLEQH QERRKQE--- ---------- --VQELQQLL AEKQEEKESL 401 450 ENSP00000471252/1-1146 GREVESLQSR LSLLENEREN TSYDVTTLQD EEGELPDLPG AEVLLSRQLS ENSTTRP00000001597/1-792 GREVESLQSR LSLLENEREN TSYDVATLQD EEGELPDFPG AEALLSKHLS ENSBTAP00000019653/1-1117 GREVESLQSR LSLLENEREN TSYDVATLQD EEGELPEFPG AEVLLSKQLS bmy_15837T0/1-1036 GREVESLQSR LSLLENEREN TSYDVATLQD EEGELPDFPG AEALLSKHLS BACU002614/1-954 GREVESLQSR LSLLENEREN TSYDVATLQD EEGELPDFPG AEALLSKHLS 451 500 ENSP00000471252/1-1146 PSAQEHLASL QEQVAVLTRQ NQELMEKVQI LENFEKDETQ MEVEALAEVI ENSTTRP00000001597/1-792 PSAQDLLASL QEQVATLTRQ NQELMEKVQI LEHFEKDE-- MEADSLAEVI ENSBTAP00000019653/1-1117 PSAQELLASL QEQVAMLTRQ NQELMEKVQI LEHFEKDE-- MEADGPAEVI bmy_15837T0/1-1036 PSAQELLASL QEQVAMLTRQ NQELMEKVQI LEHFEKDE-- MEAGSLAEVI BACU002614/1-954 PSAQELLASL QEQVTMLTRQ NQELMEKVQI LEHFEKDE-- MEAGSLAEVI 501 550 ENSP00000471252/1-1146 PLALYDSLRA EFDQLRRQHA EALQALRQQE TREVPREEGA ACGESEVAGA ENSTTRP00000001597/1-792 PLALYNSLWA EFDQLRRQHA KALQALGQQE AQEGPGEEEA APREGNGPGA ENSBTAP00000019653/1-1117 PLELYDALQA EFDQLRRQHA KALQALEQQE AREALAEEEA ASREGKGLGT bmy_15837T0/1-1036 PLALYDSLRA EFDQLHRQHA KALQALEQQE AQEAPGEEEA APREGKGPGA BACU002614/1-954 PLALYDSLRA EFDQLRRQHA KALQALEQQE AQEAPGEEEA APREGKGPGA 551 600 ENSP00000471252/1-1146 TATKNGPTHM ELNGSVAPET KVNGAETIDE EAAGDETMEA --RTMEAEAT ENSTTRP00000001597/1-792 KAARNGPVEA ELNGTAAPET RVNGAKSTDE EAAGVETTEA --RALEAASM ENSBTAP00000019653/1-1117 KTSRNGPVEI ELNGTAAPET RVNGVKTTDE EAAGVETTEA LSQSLEVVST bmy_15837T0/1-1036 KTTRNGPVQT ELNGTAAPET RVNGAESTDE EAAGVETTEA --RALEAASV BACU002614/1-954 KTTRNGPVQT ELNGTAAPET RVNGAESTDE EAAGVETMEA --RALEAASV 601 650 ENSP00000471252/1-1146 GAEATGAEAT GAKVTETKPT GAEVREMETT EEEANMETKP TGAQATDTET ENSTTRP00000001597/1-792 VAEATETRPT DAEATETEGV GAE------- ----RLETKA AGAEVTETKT ENSBTAP00000019653/1-1117 MAEATVTKPT DTEASETEGV GAQ------- ----PLETKA TGAEVTEMKT bmy_15837T0/1-1036 VAEATETRPT DAEATETEGV GAE------- ----RLETKA TGAEVTETKT BACU002614/1-954 VAEATETRPT DAEATETEGV GAE------- ----RLDTKA TGAEVTETKT 651 700 ENSP00000471252/1-1146 ------TGVE AMGVEATKTK AEEAEMQAYG VGAGQAEPPV TGTTNMEATG ENSTTRP00000001597/1-792 LEEGGNSETE ATGAESTNMK TEEPEWKASG TGAVQEELTG TGTMKTEAV- ENSBTAP00000019653/1-1117 LERGGNPEPK ATRAETTSMK TEEPEMKPNG VSAVEEELTG -----TEAM- bmy_15837T0/1-1036 LEEGGNPETK ATGAESTNMK TEEPEWKASG IGAVPEELTR TGTMKTEAV- BACU002614/1-954 LEEGGNPETK ATGAESTNMK TEEPEWKASG TGAVPEELTG TGTMKTEAV- 701 750 ENSP00000471252/1-1146 SRATGMESTG VSATGVENPG VEATVPGISA GPILHPGAAE ASEKLQVELE ENSTTRP00000001597/1-792 ---------- ---------G VEATTPRVTT GPTLHP---- ---------- ENSBTAP00000019653/1-1117 ---------- ---------G VELMIPRALT GPILHPGAAE ASEKLQTELE bmy_15837T0/1-1036 ---------- ---------G VEATTPRVTP GPALHP---- ---------- BACU002614/1-954 ---------- ---------G VEAATPRVTP GPALHP---- ---------- 751 800 ENSP00000471252/1-1146 TRIRGLEEAL RQREREAAAE LEAALGKCEA AEAEAGRLRE RVREAEGSGA ENSTTRP00000001597/1-792 ---------- ------SAAE LEAAHGKCEP A--------- ---EAEGGGA ENSBTAP00000019653/1-1117 TRIRSLEEAL RQREREAAAE LEAAHGKCEA AEAEAGRLRE RVREAEGGRA bmy_15837T0/1-1036 ---------- ------SAAG LEAAHGKAEP A--------- ---EAEGGGA BACU002614/1-954 ---------- ------SAAG LEAAHGKAEP A--------- ---EAEGGGA 801 850 ENSP00000471252/1-1146 SGGGGGDTTQ LRAALEQARE DLRDRDSRLR ELEAASACLD EARASRLLAE ENSTTRP00000001597/1-792 GGVSSGDAGQ LRAALEQARE DLRDRDCRLR EMEAASAQLD EAQAGRLLAE ENSBTAP00000019653/1-1117 SGVRDGDTGQ LRAALEQARE DLRDRDCRLR ELEAASARLD EARAGRLLAE bmy_15837T0/1-1036 GGVSSGDTSQ LRAALEQARE DLRDRDCRLR ELEAASARLD EAQAGRLLAE BACU002614/1-954 GGVSSGDTGQ LRAALEQARE DLRDRDCRLR ELEAASARLD EAQAGRLLAE 851 900 ENSP00000471252/1-1146 EEARGLRAEL AQREEARLEQ SRELEVLREQ LATARATGEQ QRTAAAELGR ENSTTRP00000001597/1-792 EEARGLRAEL AQREELRLEL SREVQALREQ LATAAAAGEQ QRAAAI---- ENSBTAP00000019653/1-1117 EEARGLRAEL ARREEARLEL SRELEALREQ LVAATATGEQ QRAAAAELGQ bmy_15837T0/1-1036 EEARGLRAEL AQREELRLEL SRELQALREQ LATATAAGEQ HRATAIKLGQ BACU002614/1-954 EAARGLRAEL AHRED----- ---------- ---------- ---------- 901 950 ENSP00000471252/1-1146 ARDAAEARVA ELPAACEEAR QGLAELREAS EALRQSVVPA SEHRRLQEEA ENSTTRP00000001597/1-792 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019653/1-1117 ARDAAEARAA ELSAACEEAR QGLAELREAS EALRQSAVPA SEHHRLQEEA bmy_15837T0/1-1036 ARDAAEARAA ELAAACEEAR QGLAELREAS EGLRQSAVPA SEHHRLQEEA BACU002614/1-954 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSP00000471252/1-1146 LELRGRAASL EQEVVATGKE AARLRAELER ERVCSVALSE HERIVGTLQA ENSTTRP00000001597/1-792 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019653/1-1117 LELRGRAACL EQEVVATGKE AARLRAELER ERVGSMARLE HERIVGALQA bmy_15837T0/1-1036 LELRGRAASL EQEVVATGKE AARLRAELER ERVGSVARLE HERIVGALQA BACU002614/1-954 ---------L EQEVVATGKE AARLRAELER ERVGSVARLE HERIVGALQA 1001 1050 ENSP00000471252/1-1146 NVAQLEGQLE ELGRRHEKTS AEVFQVQREA LFMKSERHAA EAQLATAEQQ ENSTTRP00000001597/1-792 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019653/1-1117 DVARLQGQLE ELGRRHEKTS AEVFQVQREA LFMKSERHAA EAQLATAEQQ bmy_15837T0/1-1036 DVARLQGQLE ELGRRHEKTS AEVFQVQREA LFMKSERHAA EAQLATAEQQ BACU002614/1-954 DVARLQGQLE ELGRRHEKTS AEVFQVQREA LFMKSERHAA EAQLATAEQQ 1051 1100 ENSP00000471252/1-1146 LRGLRTEAER ARQAQSRAQE ALDKAKEKDK KITELSKEVF NLKEALKEQP ENSTTRP00000001597/1-792 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019653/1-1117 LRGLRTEAER ARQAQSRAQE ALEKAKEKDK KITELSKEVF SLKEALKDQP bmy_15837T0/1-1036 LRGLRTEAER ARQAQSRAQE ALERAKEKDK KITELSKEVF SLKEALKDQP BACU002614/1-954 LRGLRTEAER ARQAQSRAQE ALERAKEKDK KITELSKEVF SLKEALKDQP 1101 1150 ENSP00000471252/1-1146 AALATPEVEA LRDQVKDLQQ QLQEAARDHS SVVALYRSHL LYAIQGQMDE ENSTTRP00000001597/1-792 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019653/1-1117 GAPDSLEVEA LRGQVKALRE QLEEAAREHS AVVALYRSHL LYAIQGQMDE bmy_15837T0/1-1036 GAPGSSEVEA LRGQVKALRE QLE------- ---------- -----GQMDE BACU002614/1-954 GAPGSSEVEA LRGQVKALRE QLEEASRDHS AVVALYRSHL LYAIQGQMDE 1151 1200 ENSP00000471252/1-1146 DVQRILSQIL QMQRLQAQGR ENSTTRP00000001597/1-792 ---------- ---------- ENSBTAP00000019653/1-1117 DVQRILSQIL QMQRLQAQGR bmy_15837T0/1-1036 DVQRILSQIL QMQRLQAQGR BACU002614/1-954 DVQRILSQIL QMQRLQAQGR