KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 17:08:46 2014  Check: 00 ..

 Name: BACU012837/1-161          Len:    323  Check:  7977  Weight:  1.00
 Name: ENSTTRP00000013457/1-215  Len:    323  Check:  7959  Weight:  1.00
 Name: bmy_03327T0/1-309         Len:    323  Check:  3487  Weight:  1.00
 Name: ENSBTAP00000019656/1-219  Len:    323  Check:  9224  Weight:  1.00

//


                          1                                                   50
BACU012837/1-161          MDTGDQPTAG SERARDRT-- ---------- ---------- ---------- 
ENSTTRP00000013457/1-215  ----PVPRYR DVRTKARC-- ---------- ---------- ---------- 
bmy_03327T0/1-309         --MLRRPLAG LAAAALRRVP SDGGNSPGTG SSKQLVKPLQ LEDFMLDAIV 
ENSBTAP00000019656/1-219  --MLRRPLAG LAAAALGR-- ---------- ---------- ---------- 


                          51                                                 100
BACU012837/1-161          ---------- ---------- ---------- --PDCSGIKG -TPAPSVGNV 
ENSTTRP00000013457/1-215  ---------- ---------- ---------- --PEW-TLRG WEEHPTEET- 
bmy_03327T0/1-309         DPAGCGGAER GSSLTPFSKL IPSSPKVSTE AAPHAEGMSG --PRPVVLSG 
ENSBTAP00000019656/1-219  ---------- ---------- ---------- --ALSDGMSG --PRPVVLSG 


                          101                                                150
BACU012837/1-161          P--LVLLCRF GSILQKHTDL GGSMRD---- ---------- --ITGSNQNR 
ENSTTRP00000013457/1-215  PAGTQQHLRL QRVPHHKGP- ---------- ---------- -------EAR 
bmy_03327T0/1-309         PSGAGKSTLL KRLLQEHSSI FGFSVSREAP GEVSQVSHWY LFLDTTRDPR 
ENSBTAP00000019656/1-219  PSGAGKSTLL KKLLQEHGSI FGFSVS---- ---------- ---HTTRDPR 


                          151                                                200
BACU012837/1-161          RGEK------ -FSPRVKPTD TPFLDFIL-- -----LY--- --FVPFSLLL 
ENSTTRP00000013457/1-215  RGER------ -Q-REVMQRD IAAGDFIEHA EFSGNLYGTS KAAVRAVQAM 
bmy_03327T0/1-309         PGEENGKDYY FVTREVMQRD IAAGDFIEHA EFSGNLYGTS KAAVRAVQAM 
ENSBTAP00000019656/1-219  PGEENGKDYY FVTREVMQRD IAAGDFIEHA EFSGNLYGTS KAAVRAVQAM 


                          201                                                250
BACU012837/1-161          NQFCS-NRD- KGVRNIGKTD LRPTCIFLRS PSLD----RL EQRNTDTEQS 
ENSTTRP00000013457/1-215  NRICVLDVDL QGVRNIKKTD LRPVYIFVQP PSLDVLEQRL RQRNTETEES 
bmy_03327T0/1-309         NRICVLDVDL QGVRNIKKTD LRPIYIFVQP PSLDVLEQRL RQRNTETEES 
ENSBTAP00000019656/1-219  NRICVLDVDL QGVRNIKKTD LRPIYIFVQP PSLDVLEQRL RQRNTETEES 


                          251                                                300
BACU012837/1-161          ----LAAARA DLKPGEQQGA RPV------- ---------- ---------- 
ENSTTRP00000013457/1-215  LAKRLAAARA DMESRNKEGS SNWSLLSRS- -TGYTPQVGG LAPTCSGPGS 
bmy_03327T0/1-309         LAKRLAAARA DMESSKEPGL FDLIIVNDSL DKAYWVLKEA LSEASSPPHP 
ENSBTAP00000019656/1-219  LAKRLAAARA DMESSKEPGL FDLIIVNDSL DKAYWALKEA LSEEIKKAQ- 


                          301                                                350
BACU012837/1-161          ---------- ---------- --- 
ENSTTRP00000013457/1-215  PRWLCSLSHP GGCCHRDWRT FLS 
bmy_03327T0/1-309         INPPPMEAGP TSK------- --- 
ENSBTAP00000019656/1-219  --------GT GQS------- ---