KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:08:57 2014 Check: 00 .. Name: ENSP00000286031/1-853 Len: 1001 Check: 7076 Weight: 1.00 Name: ENSBTAP00000019683/1-911 Len: 1001 Check: 9051 Weight: 1.00 Name: ENSTTRP00000003840/1-848 Len: 1001 Check: 2425 Weight: 1.00 Name: bmy_03690T0/1-886 Len: 1001 Check: 5691 Weight: 1.00 Name: BACU018842/1-850 Len: 1001 Check: 624 Weight: 1.00 // 1 50 ENSP00000286031/1-853 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019683/1-911 ---------- ---------- ---------- -MSQERAVPE SAVPLEEISS ENSTTRP00000003840/1-848 ---------- ---------- ---------- ---------- ---------- bmy_03690T0/1-886 MVLARKACRD GGSFRSWLWR ECFEALVLGD SMSQERAVPA SAVPLEELSS BACU018842/1-850 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000286031/1-853 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019683/1-911 WPEELCRREL PSVLPRLLSI YQHSDNWIE- ---------- ---------- ENSTTRP00000003840/1-848 ---------- ---------- ---------- ---------- ---------- bmy_03690T0/1-886 WPEELCRREL PSVLPRLLIS FIVTSTWRGV WGLSPVFSPV SSHPLPGRVG BACU018842/1-850 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000286031/1-853 ---------- ---------- ---------- ---------- -----MFLPH ENSBTAP00000019683/1-911 ---------- ---------- ---------- -----HIPYL CIILECFLPH ENSTTRP00000003840/1-848 ---------- ---------- ---------- ---------- -----MFLPH bmy_03690T0/1-886 FLRLQPSPFS VDERDDIFLN FFTLCISILT VGLSIFVKIL KIIVEMFLPH BACU018842/1-850 ---------- ---------- ---------- ---------- -----MFLPH 151 200 ENSP00000286031/1-853 MNHLTLEQTF FSQVLPK-TV KLFDDMMYEL TSQARGLSSQ NLEIQTTLRN ENSBTAP00000019683/1-911 RTHLPLEQTS FSQVLPKETV RLFDDMMYEL TSQARELSSQ NLEIQSTLRN ENSTTRP00000003840/1-848 MNHLTLEQTF FSQVLPK-TV RLYDDMMYEL TSQARGLSSQ NLEIQTTIRN bmy_03690T0/1-886 MNHLTLEQTF FSQVLPK-TV RLFDDMMYEL TSQARGLSSQ NLEIQTTLRN BACU018842/1-850 MNHLTLEQTF FSQVLPK-TV RLFDDMMYEL TSQARGLSSQ NLEIQTTLRN 201 250 ENSP00000286031/1-853 ILQTMVQLLG ALTGCVQHIC ATQESIILEN IQSLPSSVLH IIKSTFVHCK ENSBTAP00000019683/1-911 ILQTMVQLLG ALTGCVQHVC ATQESVILEN IHSLPSSVLH VIKSTFVHCK ENSTTRP00000003840/1-848 ILQTMVQLLG ALTGCVQHVC ATQESIILEN IHSLPSSVLH VIKSTFVHCK bmy_03690T0/1-886 ILQ------- ---------- ---------- ---------- ---------- BACU018842/1-850 ILQTMVQLLG ALTGCVQHVC ATQESIILEN IHSLPSSVLH VIKSTFVHCK 251 300 ENSP00000286031/1-853 NSESVYSGCL HLVSDLLQAL FKEAYSLQKQ LMELLDMVCM DPLVDDNDDI ENSBTAP00000019683/1-911 NSESVYSGRL HLVADLLQAL FKEAYSLQKQ LMELLDMVCM NPLIDEHDDI ENSTTRP00000003840/1-848 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXLIDENDDI bmy_03690T0/1-886 NSESVYSGRL HLVSDLLQAL FKEAYSLQKQ LMELLDMVCM DPLIDENDDI BACU018842/1-850 NSESVYSGRL HLVSDLLQAL FKEAYSLQKQ LMELLDMVCM DPLIDENDDI 301 350 ENSP00000286031/1-853 LNMVIVIHSL LDICSVISSM DHAFHANTWK FIIKQSLKHQ SIIKSQLKHK ENSBTAP00000019683/1-911 LNMVVVIHSL LDICSVISSM DHAFHANTWK FIIKQSLKHQ SVIKSQLKHK ENSTTRP00000003840/1-848 LNMVVVIHSL LDICSVISSM DHAFHANTWK FIIKQSLKHQ SVIKSQLKHK bmy_03690T0/1-886 LNMVVVIHSL LDICSVISSM DHAFHANTWK FIIKQSLKHQ SVIKSQLKHK BACU018842/1-850 LNMVVVIHSL LDICSVISSM DHAFHANTWK FIIKQSLKHQ SVIKSQLKHK 351 400 ENSP00000286031/1-853 DIITSLCEDI LFSFHSCLQL AEQMTQSDAQ DNADYRLFQK TLKLCRFFAN ENSBTAP00000019683/1-911 DIITSLCEDI LFSFHSCLQL AEQMIQSDAQ DNADYRLFQK TLKLCRFFAN ENSTTRP00000003840/1-848 DIITSLCEDI LFSFRSCLQL AEQMTQSDAQ DNTDCKLFQK TLKLCRFFAN bmy_03690T0/1-886 DIITSLCEDI LFSFHSCLQL AEQMTQSDAQ DNTDCRLFQK TLKLCRFFAN BACU018842/1-850 DIITSLCEDI LFSFHSCLQL AEQMTQSDAQ DNTDCRLFQK TLKLCRFFAN 401 450 ENSP00000286031/1-853 SLLHYAKEFL PFLSDSCCTL HQLYLQIHSK FPPSLYATRI SKAHQEEIAG ENSBTAP00000019683/1-911 SLLHYTKEFL PFLSDSCCTL HQLYLQIYSK FPPSLYAAGI SKAQQEEIAS ENSTTRP00000003840/1-848 SLLHYTKEFL PFLCDSCCTL HQLYLQVHSK FPPSLYAAGI SKAQQEEIAG bmy_03690T0/1-886 SLLHYTKEFL PFLSDSCCTL HQLYLQVHSK FPPSLYAAGI SKAQQEEIAG BACU018842/1-850 SLLHYTKEFL PFLSDSCCTL HQLYLQVHSK FPPSLYAAGI SKAQQEEIAG 451 500 ENSP00000286031/1-853 AFLVTLDPLI SQLLTFQPFM QVVLDSKL-- DLPCELQFPQ CLLLVVVMDK ENSBTAP00000019683/1-911 TFLVTLSPLI SQLLTFQPFV DVVLDSKLGE ELPCELQLPQ CLLLVVIMDE ENSTTRP00000003840/1-848 AFLVTLDPLV SQLLKFQPFV EVVLDSEL-- ELPCELQFPQ CLLLVVIMDE bmy_03690T0/1-886 AFLVTLDPLV TQLLKFQPFV EVVLXSKL-- ELPCELQFPQ CLLLVVIMDE BACU018842/1-850 AFLVTLDPLV TQLLKFQPFV EVVLDSKL-- ELPCELQFPQ CLLLVVIMDE 501 550 ENSP00000286031/1-853 LPSQPKEVQT LWCTDSQVSE TTTRISLLKA VFYSFEQCSG ELSLPVHLQG ENSBTAP00000019683/1-911 LSSRPEDVQA LWCTESQVSE ATARVSLLKA IFSSFEQCSG ELSLPVHLQG ENSTTRP00000003840/1-848 LPSQPEDVQT LWCTETQVSE ATTRVSLLKA IFSSFEQCSG ELSLPVHLQE bmy_03690T0/1-886 LPSQPEDVQT LWCTESQVSE ATTRVSLLKA IFSSFEQCSG ELSLPVHLQE BACU018842/1-850 LPSQPEDVQT LWCTESQVSE ATTRVSLLKA IFSSFEQCSG ELSLPVHLQE 551 600 ENSP00000286031/1-853 LKSKGKAEVA VTLYQHVCVH LCTFITSFHP SLFAELDAAL LNAVLSANMI ENSBTAP00000019683/1-911 VKSKGQAEVA VTLYQHVCIH LCTFIASLHP SLFPELDTAL LNAVLSADMI ENSTTRP00000003840/1-848 VKSMGK-EVA VTLYQHVCVH LCTFIASLHP SLFPELDTAL LNAVLSANMI bmy_03690T0/1-886 VKSKGQTEVA VTLYQHVCVH LCTFIASLHP SLFPELDTAL LNAVLSANMI BACU018842/1-850 VKSKGQTEVA VTLYQHVCVH LCTFIASLHP SLFPELDTAL LNAVLSANMI 601 650 ENSP00000286031/1-853 TSLLAMDAWC FLARYGTAEL CAHHVTIVAH LIKSCPGECY QLINLSILLK ENSBTAP00000019683/1-911 TSLLAMDAWC FLARYGTAEL CAHHVTIMAH LIKSCPGECY QLTNLSILLR ENSTTRP00000003840/1-848 TSLLAMDAWC FLARYGTAEL CAHHVAIVAH LIKSCPGECH QLTSLSVLLR bmy_03690T0/1-886 TSLLAMDAWC FLARYGTAEL CAHHVTIVAH LV-------- ---------- BACU018842/1-850 TSLLAMDAWC FLARYGTAEL CAHHVTIVAH LIKSCPGECH QLTSLSVLLR 651 700 ENSP00000286031/1-853 RLFFFMAPPH QLEFIQKFSP KEAENLPLWQ HISFQALPPE LREQTVHEVT ENSBTAP00000019683/1-911 RLFFFMAPRQ QVEFIQKFPP KETENLLLWQ YISFQALPAE LRKQTALEVT ENSTTRP00000003840/1-848 RLFFFMTPPQ QVEFIQKFSP KEAENLLLWQ YISFQALPAE LRKQTALEVS bmy_03690T0/1-886 ---------- --EFIQKFSP KEAENLLLWQ YISFQALPAE LRKQTALEVS BACU018842/1-850 RLFFFMTPPQ QVEFIQKFSP KEAENLLLWQ YISFQALPAE LRKQTALEVS 701 750 ENSP00000286031/1-853 TVGTAECRKW LSRSRTLGEL ESLNTVLSAL LAVCNSAGEA LDTGKQTAII ENSBTAP00000019683/1-911 RAGTAWCMKW LGSNRTLEEL ESLNTVLSAL LAVCNSSGEA LDLGQQTAIK ENSTTRP00000003840/1-848 RSGTAQCRKW LSSSRTLGEL ESLNTVLSAL LAVCNSASEA LDMGQQTAVK bmy_03690T0/1-886 RSGTAECRKW LSSSRTLGEL ESLNPVLSAL LAVCNSASEA LDMGQQTAVK BACU018842/1-850 RSGTAECRKW LSSSRSLGEL ESLNPVLSAL LAVCNSASEA LDMGQQTAVK 751 800 ENSP00000286031/1-853 EVVSQLWAFL NIKQVADQPY VQQTFSLLLP LLGFFIQTLD PKLILQAVTL ENSBTAP00000019683/1-911 EVGSQLSILL NVKLVIGQPY VQQTLSLLLP LLGFFIQTLD PQLVSQVITL ENSTTRP00000003840/1-848 EVGSQLWALL NIKLVT--QY VQQTLCLLLP LLGFFIQTLD PQLISQVITL bmy_03690T0/1-886 EVGSQLWALL NTKLV----- ---------- ---------- -------ITL BACU018842/1-850 EVGSQLWALL NIKLVTGQPY VQQTLSLLLP LLGFFIQTLD PQLISQVITL 801 850 ENSP00000286031/1-853 QTSLLKLELP DYVRLAMLDF VSSLGKLFIP EAIQDRILPN LSCMFALLLA ENSBTAP00000019683/1-911 QTSLLKLEPP DHVRLAFLDF LSSLGKLFIP QTIQDRILPS LSSVFASLLA ENSTTRP00000003840/1-848 QTSLLKSEPP DHVRLAVLDF LSSLGKLFIP QAIQDKILPH LSSVFALLLA bmy_03690T0/1-886 QTSLLKSEPP DHVRLAVLDF LSSLGKLFIP QAIQDKILPH LSSVFASLLA BACU018842/1-850 QTSLLKSEPP DHVRLAVLDF LSSLGKLFIP QAIQDKILPH LSSVFASLLA 851 900 ENSP00000286031/1-853 DRSWLLEQHT LEAFTQFAEG TNHEEIVPQC LSSEETKNKV VSFLEKTGFV ENSBTAP00000019683/1-911 DRNWLLEQHS LEAFTQFAEG TTHEEIVPQC LSSEETKKKV VSFLEKTGFV ENSTTRP00000003840/1-848 DRNWLLEQHS LEAFTQFAEG TNHEEIVPQC LSSEETKKKV VSFLEKTGFV bmy_03690T0/1-886 DRNWLLEQHS LEAFTQFAEG TNHEEIVPQC LSSEETKKKV VSFLEKTGFV BACU018842/1-850 DRNWLLEQHS LEAFTQFAEG TNHEEIVPQC LSSEETKKKV VCFLEKTGFV 901 950 ENSP00000286031/1-853 DETEAAKVER VKQEKGIFWE PFANVTVEEA KRSSLQPYAK RARQEFPWEE ENSBTAP00000019683/1-911 DETTAARLER IKQEKGTFWE PFAKVTQEET KMSSLQPCVK RARHELPSED ENSTTRP00000003840/1-848 EETAAARVER VKQEKGTFWE PFAKVTVEEA KKSALQPSAK RARHELPLEE bmy_03690T0/1-886 DETAAARVER VKQEKGTFWA PFAKVTVEEA EKSSLQPSAK RARHELPLEE BACU018842/1-850 DETAAARVER VKQEKGTFWA PFAKVTVEEA EKSSLQPSAK RARHELPLEE 951 1000 ENSP00000286031/1-853 EYRSALHTIA GALEATESLL QKGPAPAWLS MEMEALQERM DKLKRYIHTL ENSBTAP00000019683/1-911 EYRSTLQAAT EALEAIELLL QKSPPPDWLL MEMETLQERI DKLKR--QVL ENSTTRP00000003840/1-848 EYRSALQAAT AALEAIELLL QKSPPPDWLL TKMETLQERI DTLKH--CIL bmy_03690T0/1-886 EYRSALQAAT AALEAIELLL QKSPPPDWLL TKMETLQERI DKLKH--HVF BACU018842/1-850 EYRSALQAAT AALEAIESLL QKSPPPDWLL TKMETLQERI DKLKH--HVF 1001 1050 ENSP00000286031/1-853 G ENSBTAP00000019683/1-911 - ENSTTRP00000003840/1-848 G bmy_03690T0/1-886 - BACU018842/1-850 -