KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:08:58 2014 Check: 00 .. Name: ENSTTRP00000003842/1-687 Len: 743 Check: 7390 Weight: 1.00 Name: ENSBTAP00000019684/1-734 Len: 743 Check: 23 Weight: 1.00 Name: bmy_03689T0/1-732 Len: 743 Check: 3776 Weight: 1.00 Name: BACU004259/1-272 Len: 743 Check: 96 Weight: 1.00 // 1 50 ENSTTRP00000003842/1-687 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019684/1-734 MGSENSALKS YALKEPPFTL PSGLAVYPAV LQDGKLASVF VYKRENEDKV bmy_03689T0/1-732 MGSENSALKS YALKEPPFTL PSGLAVYPAV LQDGKFASVF VYKRENEDKV BACU004259/1-272 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000003842/1-687 -----HLKTL RHPCLLRFLS CTVEADGIHL VTERVQPLEV ALETLSSAEV ENSBTAP00000019684/1-734 NKAAKHLKTL RHPCLLRFLS CTVEADGIHL VTERVQPLEV VLETLSSAEV bmy_03689T0/1-732 NKAAKHLKTL RHPCLLRFLS CTVEADGIHL VTERVQPLEV ALETLSSAEV BACU004259/1-272 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000003842/1-687 CAGIYDILLA LIFLHDRGHL THNNVCLSSV FVSEDGHWKL GGMETVCKVP ENSBTAP00000019684/1-734 CAGIYDILLA LIFLHDRGHL THNNVCVSSV FVSEDGHWKL GGMETVCKVA bmy_03689T0/1-732 CAGIYDILLA LIFLHDRGHL THNNVCLSSV FVSEDGHWKL GGMETVCKVP BACU004259/1-272 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000003842/1-687 QATPEFLRSI QSVRDPASIP PEEMLPEFTT LPESHGHARD AYSFGTLVES ENSBTAP00000019684/1-734 QATPEFLKSI RSVRDPASIP PEEMSPEFTT LPASHGHARD AYSFGTLVES bmy_03689T0/1-732 QATPEFLRSI RSVRDPASIP PEEMFPEFTT LPESHGHARD AYSFGTLVES BACU004259/1-272 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000003842/1-687 LLTILSEQVS ADVLSSFQQT LHSTLLNPIP NCRPALCTLL SHDFFRNDFL ENSBTAP00000019684/1-734 LLTVLSEQVA ADILSSFQQT LRSALLSPSP HCRPALCSLL CHDFFRNDFL bmy_03689T0/1-732 LLTILSEQVS ADVLSSFQQT LHSTLLNPTP NCRPALHTLL SHDFFRNDFL BACU004259/1-272 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000003842/1-687 EVVNFLKSLT LKSEEEKAEF FKFLLDRVSC LSEELIASRL VPLLLNQLVF ENSBTAP00000019684/1-734 EVVNFLKSLT LKSEEEKTEF FKFLLDRVSC LSEELIASRL VPLLLNQLVF bmy_03689T0/1-732 EVVNFLKSLT LKSEEEKAEF FKFLLDRVSC LSEELIASRL VPLLLNQLVF BACU004259/1-272 ---------- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000003842/1-687 AEPVAVKSFL PYLLGPKK-X XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000019684/1-734 AEPVAVKSFL PYLLGPKK-D NTHGEAPRLL SPALFQARVI PVLLRLFEVH bmy_03689T0/1-732 AEPVAVKSFL PYLLGPKKED GARGGAPRLL SPALFQARVI PVLLRLFEVH BACU004259/1-272 ---------- ---------- ---------- ---------- ---------- 351 400 ENSTTRP00000003842/1-687 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XVLLGLRDTS DSIVAITLHS ENSBTAP00000019684/1-734 EEHVRVVLLS HLEAYVEHFT QEQLKKVILP QVLLGLRDTS DSIVAITLHS bmy_03689T0/1-732 EEHVRTVLLS HLEAYVEHFT QEQLKKVILP QVLLGLRDTS DSIVAITLHS BACU004259/1-272 ---------- ---------- ---------- ---------- ---------- 401 450 ENSTTRP00000003842/1-687 LAVLVSLLGP EVVVGGERTK VFKCTAPSFT KTMDLSPQDS PTHVVCSQRS ENSBTAP00000019684/1-734 LAVLVSLLGP EVVVGGERTK IFKRTAPSFT KTVDLSPEDS PVHVTCSQRS bmy_03689T0/1-732 LAVLVSLLGP EVVVGGERTK VFKRTAPSFT KTMDLSAEDS PMHVVCSQRS BACU004259/1-272 ---------- ---------- ---------- ---------- ---------- 451 500 ENSTTRP00000003842/1-687 QISPVLKNPS SSIFPKCFSG NVPITSKKHI QRDYYSTLLQ TGDQFSQPIK ENSBTAP00000019684/1-734 QSLPILKNAP PGIFPKCFSG NMPINSKKHI PQDYYSTFLQ TDDQFSQPIK bmy_03689T0/1-732 PISPVLKNPS SSIFPKCFSA NMPITSKQHI QRDYYSTLLQ TGDQFSQPIK BACU004259/1-272 ---------- ---------- -MPITSKQHI QRDYYSTLLQ TGDQFSQPIK 501 550 ENSTTRP00000003842/1-687 FPINGISDVK ITSGDSEKFP SSSKKSEEWP DWSEPEEPED KPVDTEICPA ENSBTAP00000019684/1-734 FPINGISEVK ITSGDSENFP SSSKKAEEWP DWSEPEEPEN KTVNAEVCPA bmy_03689T0/1-732 FPINGISDVK ITSGDSEKFP SSSKKSEEWP DWSEPEEPEN KTVNIEICPA BACU004259/1-272 FPINGISDVN ITSGDSEKFP SSSKKSEEWP DWSDPEEPEN NTVSIEICPA 551 600 ENSTTRP00000003842/1-687 DPHAAARSPF TDLNAEAAAW DDFEPSGVDT EINPGGGITA ARPVTSGEQK ENSBTAP00000019684/1-734 DPHAAAQSPL TNLNAEEEPW DDFEPGSLDT EVNLEGGMMP TRPVTSGEQK bmy_03689T0/1-732 EPRAAARSPL TNLNAEEEAW DDFEPSSLDT EINPGGGITA ARPVTSGEQK BACU004259/1-272 EPHAAAGSPL THLNAEEAAW DDFEPSSLDT EMNPGGGITA ARPVTSGEQK 601 650 ENSTTRP00000003842/1-687 ATPTLRPLTE EAKPLKSSLP QKTSLARSRD DPDQTNPPKV SSQERRLKAP ENSBTAP00000019684/1-734 ATPAL----- ---PSKSSLP PKTSLAQSRD DPDQTKPPKV LSQERRLKVP bmy_03689T0/1-732 AASTLLPLTE EAKPLKSSLP QKTSLVRSRD DPDPTKPPKV LSQERRLKVP BACU004259/1-272 ATPTLLPLTE EAKPLKSSLP QKTSLVRSRD DPDQTKPPKV LSQERRLKVP 651 700 ENSTTRP00000003842/1-687 SELGLGEEFT IQVKKKPVKD PELDWFADMI PEIKPSAAIL ILPELRTETV ENSBTAP00000019684/1-734 SELGLGEEFT IQVKKKPVKD PELDWFADMI PEIKPSAAIL ILPELRTETV bmy_03689T0/1-732 SELGLGEEFT IQVKKKPVKD PELDWFADMI PEIKPSAAIL ILPELRTETV BACU004259/1-272 SELGLGEEFT IQVKKKPVKD PELDWFADMI PEIKPSAAIL ILPELRTETV 701 750 ENSTTRP00000003842/1-687 APNKDNVSSV MHFSSKFAAA EITEXXXXXX GEDGDLNWED NTW ENSBTAP00000019684/1-734 VPSKDNVSSV MHFSSKFAAA EITEGESSGW GEDGDLNWDD NSW bmy_03689T0/1-732 APTKDNVSSV MHFSSKFAAA EITE------ -----VRIIK LCY BACU004259/1-272 APTKDNVSSV MHFSSKFAAA EITEGESAGW GEDGDLNWED NNW