KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:09:00 2014 Check: 00 .. Name: BACU003057/1-1073 Len: 1075 Check: 7047 Weight: 1.00 Name: ENSP00000316775/1-265 Len: 1075 Check: 4187 Weight: 1.00 Name: ENSBTAP00000019713/1-262 Len: 1075 Check: 9543 Weight: 1.00 Name: bmy_00378T0/1-476 Len: 1075 Check: 9467 Weight: 1.00 Name: ENSTTRP00000008196/1-254 Len: 1075 Check: 8859 Weight: 1.00 // 1 50 BACU003057/1-1073 MKPALFSVLC EIKEKTGLST RSSQEKEPVD PQLMCLDNML LAEGEAGPEK ENSP00000316775/1-265 ---------- ---------- -----MEALP PV-------- ---------- ENSBTAP00000019713/1-262 ---------- ---------- -----MEAIP LV-------- ---------- bmy_00378T0/1-476 ---------- -----MPNQR KALATRPPPP PA-------- ---------- ENSTTRP00000008196/1-254 ---------- ---------- -----MESVP PV-------- ---------- 51 100 BACU003057/1-1073 GGGSAAAAAT AAAARGGVSP DTSIKHSGDR SKLAQICHIC HSELEKYQQT ENSP00000316775/1-265 ---------- ---------- ---------R SSL------- ---------- ENSBTAP00000019713/1-262 ---------- ---------- ---------R SSL------- ---------- bmy_00378T0/1-476 ---NELKVLG PPSVREDPRI FEVLILERER KNVLNISRWF RLQQPRQDGT ENSTTRP00000008196/1-254 ---------- ---------- ---------R SSL------- ---------- 101 150 BACU003057/1-1073 CHDFASHIMN LLREQSRTRP VAPKEMECMV SNWFGNKRIR YKKNIGKFQE ENSP00000316775/1-265 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019713/1-262 ---------- ---------- ---------- ---------- ---------- bmy_00378T0/1-476 CTG------- ---------- ---------- ---------R APRNDARLLS ENSTTRP00000008196/1-254 ---------- ---------- ---------- ---------- ---------- 151 200 BACU003057/1-1073 EANIYAIKTA VSVTQGGHSP TSSLTPASSA GSGGSFNLSG SALELRLKDG ENSP00000316775/1-265 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019713/1-262 ---------- ---------- ---------- ---------- ---------- bmy_00378T0/1-476 QAEKGQNQRR KTLHQFAQRP RVRRAPAPLV FAAPVRSRRR PAPAGSAPES ENSTTRP00000008196/1-254 ---------- ---------- ---------- ---------- ---------- 201 250 BACU003057/1-1073 GHRCEGRVEV KRQGI--WGT VYTNFWFLDG ADVVCRQLGC GAAVNAPRGV ENSP00000316775/1-265 ---------- -------LGI LL-QVTRLSV L--------- ---------- ENSBTAP00000019713/1-262 ---------- -------SGT LL-VVVKLSA L--------- ---------- bmy_00378T0/1-476 PWDCEEDVGR HSALTLPWPP VL-GGWEVRE VDVPGSSLQL GSQQDAEDKY ENSTTRP00000008196/1-254 ---------- -------WG- -------LSA L--------- ---------- 251 300 BACU003057/1-1073 YFGPRLIGST WLFYIYCDNA ETESSFSIKD CAHHDFKNYN HIFSHDQSIG ENSP00000316775/1-265 ---------- -L-------- -------VQN RDHL----YN FLLLKINLFN ENSBTAP00000019713/1-262 ---------- -L-------- -------IQN RAHL----YN FLLLKIFLFN bmy_00378T0/1-476 PSFRSAMGRG QL-------- -------AQD RAPL----YN FLLLKITRFN ENSTTRP00000008196/1-254 ---------- -L-------- -------AQN RAHL----CN FLPLKTTLFN 301 350 BACU003057/1-1073 VVCSGFVRLV GGDGPCSGRV EVHSGEDWTP VSDGNFTFPT AQVICAEMGC ENSP00000316775/1-265 HWVSGLAQEA RG-------- ---------- ---------- ---------- ENSBTAP00000019713/1-262 HWLLGLTQEA QG-------- ---------- ---------- ---------- bmy_00378T0/1-476 RWLSGLTQES QG-------- ---------- ---------- ---------- ENSTTRP00000008196/1-254 HWLSGLTQEA QG-------- ---------- ---------- ---------- 351 400 BACU003057/1-1073 GKAVSVLGHV PFRALNGRVW AEEFRCEGEE PELWSCPRVP CPGGTCHHSG ENSP00000316775/1-265 --SCNWQAHL PLGAAA---- ---------- ---------- CPLGQALWAG ENSBTAP00000019713/1-262 -------FHP PSKIAG---- ---------- ---------- CPVGRVLRAG bmy_00378T0/1-476 -------SHP PAKISA---- ---------- ---------- CPVGRVLQAG ENSTTRP00000008196/1-254 -------SHP PAKISA---- ---------- ---------- CPVGRVLQAG 401 450 BACU003057/1-1073 AVQVVCSAYT EVRLRKNGTS QCEGQVEMNI SGRWRALCAS HWTRANANVV ENSP00000316775/1-265 L--------- ---------- ---------- ---------- ---------- ENSBTAP00000019713/1-262 L--------- ---------- ---------- ---------- ---------- bmy_00378T0/1-476 L--------- ---------- ---------- ---------- ---------- ENSTTRP00000008196/1-254 L--------- ---------- ---------- ---------- ---------- 451 500 BACU003057/1-1073 CRQLGCGVAI SIPKGAEGGD QIWEARFHCL GAEPFLWNCP VTALGVPDCT ENSP00000316775/1-265 -------ALI QVP------- -VW----LVL QGPRLMWA-- ---------- ENSBTAP00000019713/1-262 -------TLL EVP------- -VC----LAL RVPRLVWA-- ---------- bmy_00378T0/1-476 -------TLI EVP------- -VW----LVQ RAPRLVWA-- ---------- ENSTTRP00000008196/1-254 -------TLI EVP------- -VW----LVR RAPRLVWA-- ---------- 501 550 BACU003057/1-1073 HGNTASVICS GNQTQVLPQC NDSVPEPASS EAPEESAAAN CSDSRQLRLV ENSP00000316775/1-265 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019713/1-262 ---------- ---------- ---------- ---------- ---------- bmy_00378T0/1-476 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008196/1-254 ---------- ---------- ---------- ---------- ---------- 551 600 BACU003057/1-1073 AGGGRCAGRV EIFHQGSWGT VCDDGWDLND AHVVCRQLGC GEALNATVSA ENSP00000316775/1-265 ---------- -----GMWG- ---------- ---------S TK-------- ENSBTAP00000019713/1-262 ---------- -----GLLG- ---------- ---------C ARAL------ bmy_00378T0/1-476 ---------- -----GVLG- ---------- ---------C GWAS------ ENSTTRP00000008196/1-254 ---------- -----GVLG- ---------- ---------C ARAS------ 601 650 BACU003057/1-1073 RFGVGSGPIW LDDLNCTGKE SHVWRCPSRG WGRHDCRHKE DAGVICSEFL ENSP00000316775/1-265 ----GLGLAL LS-------- ---------A W--------E QLGL------ ENSBTAP00000019713/1-262 ----GLGPKW LG-------- ---------A W--------E QLGL------ bmy_00378T0/1-476 ----GPAPKR LG-------- ---------A W--------E QLGL------ ENSTTRP00000008196/1-254 ----GLALKR LG-------- ---------A W--------E QLGL------ 651 700 BACU003057/1-1073 ALRMVSEDQE CAGWLEVFYN GTWGSVCRSP MRDITLSIIC SQLGCGDSGT ENSP00000316775/1-265 ---------S VAIWTDLF-- ---------- ---------- --LSCLHGLM ENSBTAP00000019713/1-262 ---------S AATWTDLF-- ---------- ---------- --LSCLHSLM bmy_00378T0/1-476 ---------S AATWTDLL-- ---------- ---------- --LSCLHSLM ENSTTRP00000008196/1-254 ---------S AATWTDLL-- ---------- ---------- --LSYLHGLM 701 750 BACU003057/1-1073 LNSSVPLREG SRPRWVDEIY CRKTDTSLWQ CPSDPWKYSS CFPKEEAYIS ENSP00000316775/1-265 LVALLLV--- -VVTWR---V CQKSH----- ---------- --------CF ENSBTAP00000019713/1-262 LAALLLL--- -LLVWR---L YQKAQ----- ---------- --------CC bmy_00378T0/1-476 LSAGLPL--- -LLTWR---L CQKAH----- ---------- --------CC ENSTTRP00000008196/1-254 LAAGLLL--- -LPTWR---L CQKAH----- ---------- --------CC 751 800 BACU003057/1-1073 CAGRRPKSCP TAAPCTDKEK LQLRGGDTVC SGRVEVWHSG SWGTVCDDSW ENSP00000316775/1-265 RLGRQLSK-- ---------- ---------- ---------- ---------- ENSBTAP00000019713/1-262 SLGRLPRK-- ---------- ---------- ---------- ---------- bmy_00378T0/1-476 SLGRLPRKVG GVGVGQAGEG RPGALGLGLV GGRRLAAGST ACELLAVTCP ENSTTRP00000008196/1-254 SLGRLPRK-- ---------- ---------- ---------- ---------- 801 850 BACU003057/1-1073 SLAEAEVVCQ QLGCGHALEA VRDAAFGPGN GSIWLDEVRC GGRESSLWDC ENSP00000316775/1-265 --------AL Q--------- ---------- ---------- ---------- ENSBTAP00000019713/1-262 --------AL L--------- ---------- ---------- ---------- bmy_00378T0/1-476 STCPPPPPAL L--------- ---------- ---------- ---------- ENSTTRP00000008196/1-254 --------AL L--------- ---------- ---------- ---------- 851 900 BACU003057/1-1073 AAEPWGQNDC KHEEDAGVRC SGGRTTLPPT TAGTRPGSYP IPGIFSLPGI ENSP00000316775/1-265 ---------- ---------- ---------- ---------- ---------V ENSBTAP00000019713/1-262 ---------- ---------- ---------- ---------- ---------Q bmy_00378T0/1-476 ---------- ---------- ---------- ---------- ---------E ENSTTRP00000008196/1-254 ---------- ---------- ---------- ---------- ---------E 901 950 BACU003057/1-1073 LCLILGALLF LVLVILVTQL LRWRAERRAV SGFEDALAEA MYEELDYLVT ENSP00000316775/1-265 NCVVRKLL-- ----VQLRRL YWWVETMTAL TSW------- ---HLAYLIT ENSBTAP00000019713/1-262 NRVVRRSL-- ----ALLKSL YWWVESTAAL TSW------- ---HLAYLIT bmy_00378T0/1-476 IRVVLGTL-- ----ALLKRL HWGVESTAAL TSW------- ---RLAYLVT ENSTTRP00000008196/1-254 NRVVLGTP-- ----ALLKRL HCGVESMAAL TSW------- ---HLAYFVT 951 1000 BACU003057/1-1073 PKEDLLGRPG FLSDDSLTKL PYDSVDEPPE QRTDDAGEGY DDVEEVPVPG ENSP00000316775/1-265 WTTCLASH-- ------LLQA AFEHTTQLAE AQEVEPQEVS GSSLLPSLSA ENSBTAP00000019713/1-262 WTTCLASH-- ------LLQA AFEHTAQLAQ AQEAEPQKAL GLSSETPPPG bmy_00378T0/1-476 WTTCLASH-- ------LLQA AFAHTAQLAQ AQEAEPQKAS GLLSESPLPE ENSTTRP00000008196/1-254 WTTCLASH-- ------LLQA AFEHTAQLAQ AQKAEPQKAL GLLCESPLPE 1001 1050 BACU003057/1-1073 APPASPRSEG KVPPEKENGV TASQTVLPTT HPLLRNAKAT AVFSFDAAEF ENSP00000316775/1-265 SSD------- ---------- -------SES GTVLPEQET- ---------- ENSBTAP00000019713/1-262 PPA------- ---------- -------PGA RPVLPEPGT- ---------- bmy_00378T0/1-476 PPA------- ---------- -------PEA GPVLPEAGT- ---------- ENSTTRP00000008196/1-254 PLA------- ---------- -------PEA -PVLPEPGA- ---------- 1051 1100 BACU003057/1-1073 SFLLHTTVVI IANGPNDEQK NILHL ENSP00000316775/1-265 ---------- ----PRE--- ----- ENSBTAP00000019713/1-262 ---------- ----PGE--- ----- bmy_00378T0/1-476 ---------- ----PVE--- ----- ENSTTRP00000008196/1-254 ---------- ----PVE--- -----