KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:09:00 2014 Check: 00 .. Name: ENSP00000296096/1-214 Len: 244 Check: 6014 Weight: 1.00 Name: ENSBTAP00000019716/1-214 Len: 244 Check: 6252 Weight: 1.00 Name: ENSTTRP00000004949/1-214 Len: 244 Check: 4100 Weight: 1.00 Name: bmy_01075T0/1-244 Len: 244 Check: 367 Weight: 1.00 Name: BACU014546/1-203 Len: 244 Check: 6762 Weight: 1.00 // 1 50 ENSP00000296096/1-214 MSQRKARGPP AMPGVGHSQT QAKARLLPGA DRKRSRLSRT RQDPWEERSW ENSBTAP00000019716/1-214 MSQREARGAR AMPGLGQSPA KATPRLLAGT ERKRSRLSRR GQDLWEESSW ENSTTRP00000004949/1-214 MSQREARAAL AMPGVGKSPA KATQRSLAGT DRKRSRLSRT GQDLWEETSW bmy_01075T0/1-244 MSQREARGAL AMPGVGKSPA KATPRLLAGT DRKKSRLSRT GQDLWEETSW BACU014546/1-203 ---------- -MPGVGKSPA KATPRLLAGT DRKRSRLSRT GQDLWEETSW 51 100 ENSP00000296096/1-214 SNQRWSRATP GPRGTRAGGL ALGR------ ---------- ---------- ENSBTAP00000019716/1-214 SNQRWSRTAP NPRGARARSL ARGR------ ---------- ---------- ENSTTRP00000004949/1-214 SNPRWSRAAP SPRGSGARRL ARGR------ ---------- ---------- bmy_01075T0/1-244 SNQSWSRAAP SPRGARARSL ARGRVRKPGP EEDALSNQGQ WRPVRPAHPG BACU014546/1-203 SNQRWSRAAP SPRGARARSL ARGQ------ ---------- ---------- 101 150 ENSP00000296096/1-214 ----SEASPE NAARERSRVR TLRQAFLALQ AALPAVPPDT KLSKLDVLVL ENSBTAP00000019716/1-214 ----SEASPE NAARERSRVR TLRQAFLALQ ATLPAVPPDT KLSKLDVLVL ENSTTRP00000004949/1-214 ----SEASPE NAARERSRVR TLRQAFLALQ AALPAVPPDT KLSKLDVLVL bmy_01075T0/1-244 SSVQSEASPE NAARERSRVR TLRQAFLALQ AALPAVPPDT KLSKLDVLVL BACU014546/1-203 ----SEASPE NAARERSRVR TLRQAFLALQ AALPAVPPDT KLSKLDVLVL 151 200 ENSP00000296096/1-214 AASYIAHLTR TLGHELPGPA WPPFLRGLRY LHPLKKWPMR SRLYAGGLGY ENSBTAP00000019716/1-214 ATSYIAHLTR TLGQEMPGPS WPPFLRGLRY LHPLKKWPMR SRLYAGGLGC ENSTTRP00000004949/1-214 ATSYIAHLTR TLGHETPGPA WPPFLRGLRY LHPLKKWPMR SRLYAGGLGC bmy_01075T0/1-244 ATSYIAHLTR TLGHEMPGPA WPPFLRGLRY LHPLKKWPMR SRLYAGGLGC BACU014546/1-203 ATSYIAHLTR TLGHEMPGPA WPPFLRGLRY LHPLKKWPMR SRLYAGGLGC 201 250 ENSP00000296096/1-214 SDLDSTTAST PSQRTRDAEV GSQVPGEADA LLSTTPLSPA LGDK ENSBTAP00000019716/1-214 SGLDSTTASN SGQRTKEAEA GPHVSGEPDA LLSTRPLSPA PSDK ENSTTRP00000004949/1-214 SGLDSTTAVT SGQRTKEAET GTQVSGEADA LLLARPLSPA PGDK bmy_01075T0/1-244 SGLDSTTVVT SGQRTKEAET GPQVSGEADA LLPTRPLSPA PGDK BACU014546/1-203 SGLDSTTVVT SGQRTKEAET GPQVSGEADA LLPTRPLSPA PGDK