KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:09:01 2014 Check: 00 .. Name: ENSTTRP00000000467/1-722 Len: 771 Check: 1604 Weight: 1.00 Name: BACU013098/1-726 Len: 771 Check: 7534 Weight: 1.00 Name: bmy_10534T0/1-733 Len: 771 Check: 8322 Weight: 1.00 Name: ENSP00000346550/1-673 Len: 771 Check: 2489 Weight: 1.00 Name: ENSBTAP00000019719/1-673 Len: 771 Check: 587 Weight: 1.00 // 1 50 ENSTTRP00000000467/1-722 -----RGLFS RPAPRCGCCN GLPSELRVRA SACSSVR--- PLQEASAARV BACU013098/1-726 --MGYRDLLS PPF------- ---------- ---------- -------GVF bmy_10534T0/1-733 VRPGSRGLSS RPAPALRLLL LTGSDPASSA SARPPARLSV RCRRLPPRVF ENSP00000346550/1-673 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019719/1-673 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000000467/1-722 VCCELETMAK LAQGARYRGS IHDFPDFDPS QDAETLYNAM KGFGSDKEAI BACU013098/1-726 SAAEPETMAK LAQGAKYRGS IHNFPDFDPS QDADTLYNAM KGFGSDKEAI bmy_10534T0/1-733 SAAEPETMAK LAQGAKYRGS IHNFPDFNPS QDAETLYNAM KGFGSDKEAI ENSP00000346550/1-673 -------MAK PAQGAKYRGS IHDFPGFDPN QDAEALYTAM KGFGSDKEAI ENSBTAP00000019719/1-673 -------MAK PAQGAKYRGS IRDFPDFNPS QDAETLYNAM KGFGSDKEAI 101 150 ENSTTRP00000000467/1-722 LELITSRSNR QRQEICQNYK SLYGKDLIAD LKYELTGKFE RLIVGLMRPP BACU013098/1-726 LELITSRSNR QRQEICQNYK SLYGKDLIAD LKYELTGKFE RLVVGLMRPP bmy_10534T0/1-733 LELITSRSNR QRQEICQNYK SLYGKDLIAD LKYELTGKFE RLIVGLMRPP ENSP00000346550/1-673 LDIITSRSNR QRQEVCQSYK SLYGKDLIAD LKYELTGKFE RLIVGLMRPP ENSBTAP00000019719/1-673 LELITSRSNR QRQEICQNYK SLYGKDLIAD LKYELTGKFE RLIVGLMRPP 151 200 ENSTTRP00000000467/1-722 AYSDAKEIKD AISGIGTDEK CLIEILASRT NEQIHQLVAA YKDAYERDLE BACU013098/1-726 AYSDAKEIKD AISGIGTDEK CLIEILASRT NEQIHQLVAA YKDAYERDLE bmy_10534T0/1-733 AYSDAKEIKD AISGVGTDEK CLIEILASRT NEQIHQLVAA YKDAYERDLE ENSP00000346550/1-673 AYCDAKEIKD AISGIGTDEK CLIEILASRT NEQMHQLVAA YKDAYERDLE ENSBTAP00000019719/1-673 AYADAKEIKD AISGIGTDEK CLIEILASRT NEQIHQLVAA YKDAYERDLE 201 250 ENSTTRP00000000467/1-722 ADVIGDTSGH FQKMLVVLLQ GTREEDDVVS EDLVQQDVQD LYEAGELKWG BACU013098/1-726 ADIIGDTSGH FQKMLVVLLQ GTREEDDVVS EDLVQQDVQD LYEAGELKWG bmy_10534T0/1-733 ADIIGDTSGH FQKMLVVLVQ GTREEDDVVS EDLVQQDVQD LYEAGELKWG ENSP00000346550/1-673 ADIIGDTSGH FQKMLVVLLQ GTREEDDVVS EDLVQQDVQD LYEAGELKWG ENSBTAP00000019719/1-673 ADITGDTSGH FRKMLVVLLQ GTREEDDVVS EDLVQQDVQD LYEAGELKWG 251 300 ENSTTRP00000000467/1-722 TDEAQFIYIL GNRSKQHLRL VFDEYLKTTG KSIEASIRGE LSGDFEKLML BACU013098/1-726 TDEAQFIYIL GNRSKQHLRL VFDEYLKTTG KPIEASIRGE LSGDFEKLML bmy_10534T0/1-733 TDEAQFIYIL GNRSKQHLRL VFDEYLKTTG KPIEASIRGE LSGDFEKLML ENSP00000346550/1-673 TDEAQFIYIL GNRSKQHLRL VFDEYLKTTG KPIEASIRGE LSGDFEKLML ENSBTAP00000019719/1-673 TDEAQFIYIL GNRSKQHLRL VFDEYLKTTG KPIEASIRGE LSGDFEKLML 301 350 ENSTTRP00000000467/1-722 AVVKCVRSTP EYFAERLFKA MK-------- -GLGTRDNTL IRIMVSRSEL BACU013098/1-726 ATVKCIRSTP EYFAERLFKA MK-------- -GLGTRDNTL IRIMVSRSEL bmy_10534T0/1-733 ATVKCIRSTP EYFAERLFKA MKVRGGVDVN EGLGTRDNTL IRIMVSRSEL ENSP00000346550/1-673 AVVKCIRSTP EYFAERLFKA MK-------- -GLGTRDNTL IRIMVSRSEL ENSBTAP00000019719/1-673 AVVKCIRSTA EYFAERLFKA MK-------- -GLGTRDNTL IRIMVSRSEL 351 400 ENSTTRP00000000467/1-722 DILDIREIFR TKYEKSLYSM IKXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU013098/1-726 DMLDIREIFR TKYEKSLYSM IKNDTSGEYK KTLLKLCGGD DDAAGKFFPE bmy_10534T0/1-733 DMLDIREIFR TKYEKSLYSM IKNDTSGEYK KTLLKLCGGD DDAAGKFFPE ENSP00000346550/1-673 DMLDIREIFR TKYEKSLYSM IKNDTSGEYK KTLLKLSGGD DDAAGQFFPE ENSBTAP00000019719/1-673 DMLDIREIFR TKYEKSLYSM IKNDTSGEYK KTLLKLCGGD DDAAGQFFPE 401 450 ENSTTRP00000000467/1-722 XXXXXXXXXX XXXXXXXXVK GTVHPAGDFN PDTDAKALRK AMKGLGTDED BACU013098/1-726 AAQVAYQMWE LSAVARVEVK GTVHPAGDFN PDADAKALRK AMKGLGTDEG bmy_10534T0/1-733 AAQVAYQMWE LSAVARVEVK GTVHPAGDFN PDADAKALRK AMKGLGTDED ENSP00000346550/1-673 AAQVAYQMWE LSAVARVELK GTVRPANDFN PDADAKALRK AMKGLGTDED ENSBTAP00000019719/1-673 AAQVAYQMWE LSAVARVELK GTVRPAGDFN PDADAKALRK AMKGLGTDED 451 500 ENSTTRP00000000467/1-722 TIIDIITHRS NAQRQQIRQT FKSHFGRDLM ADLKSELSGD LARLILGLMM BACU013098/1-726 TIIDIITHRS NAQRQQIRQT FKSHFGRDLM ADLKSELSGD LARLILGLMM bmy_10534T0/1-733 TITDIITHRS NAQRQQIRQT FKSHFGRDLM ADLKSELSGD LARLILGLMM ENSP00000346550/1-673 TIIDIITHRS NVQRQQIRQT FKSHFGRDLM TDLKSEISGD LARLILGLMM ENSBTAP00000019719/1-673 TIIDIIAHRS NAQRQQIRQT FKSHFGRDLM ADLKSELSGD LARLILGLMM 501 550 ENSTTRP00000000467/1-722 PPAHYDAKQL KKAMEGAGTD EKVLIEILAT RTNAEIRAIN EAYKEDYHKS BACU013098/1-726 PPAHYDAKQL KKAMEGAGTD EKALIEILAT RTNAEIRAIN EAYKEDYHKS bmy_10534T0/1-733 PPAHYDAKQL KKAMEGAGTD EKALIEILAT RTNAEIRAIN EAYKEDYHKS ENSP00000346550/1-673 PPAHYDAKQL KKAMEGAGTD EKALIEILAT RTNAEIRAIN EAYKEDYHKS ENSBTAP00000019719/1-673 PPAHYDAKQL KKAMEGAGTD EKALIEILAT RTNAEIQAIN KAYKEDYHKS 551 600 ENSTTRP00000000467/1-722 LEDDLSSDTS GLFKRILISL ATGNREEGGE DRDRVREDAQ VAAEILEIAD BACU013098/1-726 LEDALSSDTS GHFRRILISL ATGNREEGGE DRDRAREDAQ VAAEILEIAD bmy_10534T0/1-733 LEDALSSDTS GHFRRILISL ATVC------ EFTAPGLLGP VAAEILEIAD ENSP00000346550/1-673 LEDALSSDTS GHFRRILISL ATGHREEGGE NLDQAREDAQ VAAEILEIAD ENSBTAP00000019719/1-673 LEDALSSDTS GHFKRILISL ATGNREEGGE DRERAREDAQ VAAEILEIAD 601 650 ENSTTRP00000000467/1-722 TPSGDKSSLE TRFMMILCTR SYQHLRRVFQ EFVKMTNYDV EHTIKKGMSG BACU013098/1-726 TTSGDRSSLE TRFMTILCTR SYQHLRRVFQ EFVKMTNYDV EHTIKKEMSG bmy_10534T0/1-733 TTSGDRSSLE TRFMTILCTR SYQHLRRVFQ EFIKMTNYDV EHTIKKEMSG ENSP00000346550/1-673 TPSGDKTSLE TRFMTILCTR SYPHLRRVFQ EFIKMTNYDV EHTIKKEMSG ENSBTAP00000019719/1-673 TTSGDKSSLE TRFMMILCTR SYPHLRRVFQ EFIKMTNYDV EHTIKKEMSG 651 700 ENSTTRP00000000467/1-722 DVRDVFVAIV QSVKNKPLFF ADKLYKSMKX XXXXXXXXXX XXXXXXXXXX BACU013098/1-726 DVRDVFVAIV QSVKNKPLFF ADKLYKSMKG AGTEEKTLTR IMVSRSEIDL bmy_10534T0/1-733 DVRDVFVAIV QSVKNKPLFF ADKLYKSMKG AGTEEKTLTR IMVSRSEIDL ENSP00000346550/1-673 DVRDAFVAIV QSVKNKPLFF ADKLYKSMKG AGTDEKTLTR IMVSRSEIDL ENSBTAP00000019719/1-673 DVRDVFVAIV QSVKNKPLFF ADKLYKSMKG AGTDEKTLTR IMVSRSEIDL 701 750 ENSTTRP00000000467/1-722 XXXXXXXXXX XXXXXXXXXX --GDTSGH-- ---------- ----FLKALL BACU013098/1-726 LNIRQEFIEK YDKSLHQAIE VRGGVRGQWG SGECQVLEHR LEVLFIPRML bmy_10534T0/1-733 LNIRQEFIEK YDKSLHQAIE --GDTSGH-- ---------- ----FLKALL ENSP00000346550/1-673 LNIRREFIEK YDKSLHQAIE --GDTSGD-- ---------- ----FLKALL ENSBTAP00000019719/1-673 LNIRREFIEK YDKSLHQAIE --GDTSGH-- ---------- ----FLKALL 751 800 ENSTTRP00000000467/1-722 ALCGGKD--- ---------- - BACU013098/1-726 PLRTAKTLLN ERRPASLFIP K bmy_10534T0/1-733 AVCGGED--- ---------- - ENSP00000346550/1-673 ALCGGED--- ---------- - ENSBTAP00000019719/1-673 AICGGED--- ---------- -