KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:09:01 2014 Check: 00 .. Name: ENSTTRP00000006582/1-1079 Len: 1079 Check: 7402 Weight: 1.00 Name: ENSP00000313933/1-1079 Len: 1079 Check: 1312 Weight: 1.00 Name: bmy_00074T0/1-598 Len: 1079 Check: 288 Weight: 1.00 Name: ENSBTAP00000019726/1-1078 Len: 1079 Check: 2488 Weight: 1.00 // 1 50 ENSTTRP00000006582/1-1079 MDDDDDSCLL DLIGDPQALN YFLHGPSNKS SNEDLTNAGY SAANSNSIFA ENSP00000313933/1-1079 MDDDDDSCLL DLIGDPQALN YFLHGPSNKS SNDDLTNAGY SAANSNSIFA bmy_00074T0/1-598 ---------- ----DPQALN YFLHGPSNKS SNEDLTNAGY SAANSNSIFA ENSBTAP00000019726/1-1078 MDDDDDSCLL DLIGDPQALN YFLHGPSNKS SNEDLTNAGY SAANSNSIFA 51 100 ENSTTRP00000006582/1-1079 NSSXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000313933/1-1079 NSSNADPKSS LKGVSNQLGE GPSDGLPLSS SLQFLEDELE SSPLPDLTED bmy_00074T0/1-598 NSSNADPKSS LKAVSSQLGE GPSDGLPLSS SLQFLEDELE SSPLPDLSED ENSBTAP00000019726/1-1078 NSSNADPKSA LKAVSSQLGE GPSDGLPLSS SLQFLEDELE SSPLPDLSED 101 150 ENSTTRP00000006582/1-1079 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000313933/1-1079 QPFDILQKSL QEANITEQTL AEEAYLDASI GSSQQFAQAQ LHPSSSASFT bmy_00074T0/1-598 QPFDILQKSL QEANITEQTL AEEAYLDASI GSSQQFAQAQ LHPSSSASFT ENSBTAP00000019726/1-1078 QPFDILQKSL QEANITEQTL AEEAYLDASI GSSQQFAQAQ LHPSSSASFT 151 200 ENSTTRP00000006582/1-1079 XXSNISNYSG QTLQPIGVTH VPVGTSFASN TVGVHHGFMH HVGISVPSQH ENSP00000313933/1-1079 QASNVSNYSG QTLQPIGVTH VPVGASFASN TVGVQHGFMQ HVGISVPSQH bmy_00074T0/1-598 QASNISNYSG QTLQPIGVTH VPVGTSFASN TVGVHHGFMH HVGISVPSQH ENSBTAP00000019726/1-1078 QASNVSNYSG QTLQPIGVTH VPVGTSFASN TVGVHHGFMH HVGISVPSQH 201 250 ENSTTRP00000006582/1-1079 LSNNSQISGS GQIQLIGSFG SQPSMMTINN LDGSQIILKG SGQQAPSDVS ENSP00000313933/1-1079 LSNSSQISGS GQIQLIGSFG NHPSMMTINN LDGSQIILKG SGQQAPSNVS bmy_00074T0/1-598 LSNSSQISGS GQIQLIGSFG NQPSMMTINN LDGSQIILKG SGQQAPSNVS ENSBTAP00000019726/1-1078 LSNSSQISGS GQIQLIGSFG NQPSMMTINN LDGSQIILKG SGQQAPSNVS 251 300 ENSTTRP00000006582/1-1079 GGLLVHRQTP NGSSLFGSSS SSPAAQPVTV PFNSTNFQTS LPVHNIIIQR ENSP00000313933/1-1079 GGLLVHRQTP NGNSLFGNSS SSPVAQPVTV PFNSTNFQTS LPVHNIIIQR bmy_00074T0/1-598 GGLLVHRQTP NGNSLFGNSS SSPVAQPVTV PFNSTNFQTS LPVHNIIIQR ENSBTAP00000019726/1-1078 GGLLVHRQTP NGNSLFGNSS SSPVAQPVTV PFNSTNFQTS LPVHNIIIQR 301 350 ENSTTRP00000006582/1-1079 GLAPNSNKVP INIQPKPIQM GQQNTYNVNN LGIQQHHVQP GISFASASSP ENSP00000313933/1-1079 GLAPNSNKVP INIQPKPIQM GQQNTYNVNN LGIQQHHVQQ GISFASASSP bmy_00074T0/1-598 GLAPNSNKVP INIQPKPIQM GQQNTYNVNN LGIQQHHVQP GISFASASSP ENSBTAP00000019726/1-1078 GLAPNSNKVP VNIQPKPIQM GQQNTYNVNN LGIQQHHVQQ GISFASASSP 351 400 ENSTTRP00000006582/1-1079 QGSVVGPHMS VNIVNQQNTR KPVTSQAVSS AGGSIVIHSP MGQPHTPQSQ ENSP00000313933/1-1079 QGSVVGPHMS VNIVNQQNTR KPVTSQAVSS TGGSIVIHSP MGQPHAPQSQ bmy_00074T0/1-598 QGSVVGPHMS VNIVNQQNTR KPVTSQAVSS AGGSIVIHSP MGQPHTPQSQ ENSBTAP00000019726/1-1078 QGSVVGPHMS VNIVNQQNTR KPVTSQSVSS AGGSIVIHSP MGQPHTPQSQ 401 450 ENSTTRP00000006582/1-1079 FLIPTSLSVS SNSVHHVQTI NGQLLQTQPS QLISGQVTSE HVMLNRNSSS ENSP00000313933/1-1079 FLIPTSLSVS SNSVHHVQTI NGQLLQTQPS QLISGQVASE HVMLNRNSSN bmy_00074T0/1-598 FLIPTSLSVS SNSVHHVQTI NGQLLQTQPS QLISGQVTSE HVMLNRNSSN ENSBTAP00000019726/1-1078 FLIPTSLSVS SNSVHHVQTI NGQLLQTQPS QLISGQVASE HVMLNRNSSN 451 500 ENSTTRP00000006582/1-1079 MLRTNQPYSG QMLNNQNTAV QLVSGQTFAA SGSPVIVSHA SPQLAGGQVP ENSP00000313933/1-1079 MLRTNQPYTG PMLNNQNTAV HLVSGQTFAA SGSPVIANHA SPQLVGGQMP bmy_00074T0/1-598 MLRTNQPYSG QMLNNQNTAV QLVSGQTFAA SGSPVIVNHA SPQIVGGQMP ENSBTAP00000019726/1-1078 MLRTNQPYSG QMLNNQSAAV QLVSGQTFAA SGSPVIVNHA SPQIVGGQVP 501 550 ENSTTRP00000006582/1-1079 LQQASPTVLH LSPGQGSVSQ GRPGFAAMPS VTSMSGPSRF PVVSSSSTAH ENSP00000313933/1-1079 LQQASPTVLH LSPGQSSVSQ GRPGFATMPS VTSMSGPSRF PAVSSASTAH bmy_00074T0/1-598 LQQASPTVLH LSPGQSSVSQ GRPGFATMPS VTSMSGPSRF PVVSSSSTAH ENSBTAP00000019726/1-1078 LQQASPTVLH LSPGQSSVSQ GRPGFTTMPS VTSMAGPSRF P-VSSSSTAH 551 600 ENSTTRP00000006582/1-1079 PSLGAAVQSG ASGSNFTGDQ LTQPNRTPVP VSVSHRLPVP SSKSASTFNN ENSP00000313933/1-1079 PSLGSAVQSG SSGSNFTGDQ LTQPNRTPVP VSVSHRLPVS SSKSTSTFSN bmy_00074T0/1-598 PSLGAAVQSG ASGSNFTGDQ LTQPNRTPVP VSVSHRLPVP SSKSTSTFSN ENSBTAP00000019726/1-1078 PSLGSAVQSG ASGSNFTGDQ LTQPNRTPGP VSVSHRLPVP SSKSTSTFSN 601 650 ENSTTRP00000006582/1-1079 TPGAGSQQQX XXXAQKKSLN QTSPISASKT ADGLRQAPIP GLLSTALPGQ ENSP00000313933/1-1079 TPGTGTQQQF FCQAQKKCLN QTSPISAPKT TDGLRQAQIP GLLSTTLPGQ bmy_00074T0/1-598 TPGAGSQQQF FC-------- ---------- ---------- ---------- ENSBTAP00000019726/1-1078 TPGVGSQQQF FCQAQKKSLN QTSPISASKT TDGLRPAPMP GLLSTALPGQ 651 700 ENSTTRP00000006582/1-1079 DSGSKAIPVS LGTTQPQQEK VVGSSPGQPV VQVDSHSGGQ KRPAAKQLTK ENSP00000313933/1-1079 DSGSKVISAS LGTAQPQQEK VVGSSPGHPA VQVESHSGGQ KRPAAKQLTK bmy_00074T0/1-598 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019726/1-1078 DSGSKVIPAS LGTTQPQQEK VVGSPPGQPT VQVDGHPGGQ KRPAAKQLTK 701 750 ENSTTRP00000006582/1-1079 GAFILQQLQR DQTHTVTPDK SQFRSLSDAV QRLLSYHVCQ GSMPTEEDLK ENSP00000313933/1-1079 GAFILQQLQR DQAHTVTPDK SHFRSLSDAV QRLLSYHVCQ GSMPTEEDLR bmy_00074T0/1-598 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019726/1-1078 GAFILQQLQR DQAHAVTPDK NQFRSLSDAV QRLLSYHVCQ GSMPTEEDLR 751 800 ENSTTRP00000006582/1-1079 KVDNEFETVA TQLLKRTQAM LNKYRCLLLE DAMRINPSAE MVMIDRMFNQ ENSP00000313933/1-1079 KVDNEFETVA TQLLKRTQAM LNKYRCLLLE DAMRINPSAE MVMIDRMFNQ bmy_00074T0/1-598 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019726/1-1078 KVDSEFETVA TQLLKRTQAM LNKYRCLLLE DAMRINPSAE MVMIDRMFNQ 801 850 ENSTTRP00000006582/1-1079 EERASLSRDK RLALVDPEGF QADFCCSFKL DKAAHETQFG RSDQHGSKTA ENSP00000313933/1-1079 EERASLSRDK RLALVDPEGF QADFCCSFKL DKAAHETQFG RSDQHGSKAS bmy_00074T0/1-598 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019726/1-1078 EERASLSRDK RLALVDPEGF QADFCCSFKL DKAAHEMQFS RSDQHGGKTT 851 900 ENSTTRP00000006582/1-1079 SSVHLTAKAQ SRDRAKAGAA EPTNHDQFHL VPNHIVVSAE GNIAKKTECL ENSP00000313933/1-1079 SSLQPPAKAQ GRDRAKTGVT EPMNHDQFHL VPNHIVVSAE GNISKKTECL bmy_00074T0/1-598 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019726/1-1078 SSVHLTAKAQ SRDRAKAGLA EPMNHDQFHL VPNHIVVSAE GNISKKTDCL 901 950 ENSTTRP00000006582/1-1079 GRALKFDKMG SVQYRSASEE KTSRKDSVKG SECSPGPEGH RKNSSRPDHG ENSP00000313933/1-1079 GRALKFDKVG LVQYQSTSEE KASRREPLKA SQCSPGPEGH RKTSSRSDHG bmy_00074T0/1-598 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019726/1-1078 GRALKFDKVG SAQYRSASEE KTSRRDSAKG SECSPGPEGH RKNSSRPDHG 951 1000 ENSTTRP00000006582/1-1079 PESKLSSLLV DSHLEMTCNS SFQDKTLRNS PKNEVLHTDI MKGSAEPQPD ENSP00000313933/1-1079 TESKLSSILA DSHLEMTCNN SFQDKSLRNS PKNEVLHTDI MKGSGEPQPD bmy_00074T0/1-598 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019726/1-1078 PDSKLSSLLV DSQLEMTCNS SFQDKTLRNS PKNEVLHTDI MKGSGEPQPD 1001 1050 ENSTTRP00000006582/1-1079 LQLTKSLETT FKNILELKKA GRQPQSDPTV SGSVELDFPN FSPMASQENC ENSP00000313933/1-1079 LQLTKSLETT FKNILELKKA GRQPQSDPTV SGSVELDFPN FSPMASQENC bmy_00074T0/1-598 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019726/1-1078 LQLTKSLETT FKNILELKKA GRQSQSDPTV SGSVELDFPN FSPMASQENC 1051 1100 ENSTTRP00000006582/1-1079 LEKFIPDHSE GIVETDSILE AAVNSILEC ENSP00000313933/1-1079 LEKFIPDHSE GVVETDSILE AAVNSILEC bmy_00074T0/1-598 ---------- ---------- --------- ENSBTAP00000019726/1-1078 LEKFIPDHSE GVVETDSILE AAVNSILEC