KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:09:09 2014 Check: 00 .. Name: ENSP00000285848/1-495 Len: 531 Check: 721 Weight: 1.00 Name: ENSBTAP00000019736/1-441 Len: 531 Check: 3535 Weight: 1.00 Name: ENSTTRP00000001409/1-495 Len: 531 Check: 7181 Weight: 1.00 Name: bmy_13944T0/1-466 Len: 531 Check: 913 Weight: 1.00 Name: BACU018496/1-490 Len: 531 Check: 2663 Weight: 1.00 // 1 50 ENSP00000285848/1-495 MVTWLYRFLP TSNMAAKLRS LLPPDLRLQF WLHARLQKCF LSRGCGSYCA ENSBTAP00000019736/1-441 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001409/1-495 LLRWLCSFLP TSNMVVKLQS PLPPEWR-QL WLHAHFQKGL LPRSCGSECA bmy_13944T0/1-466 ---------- ---------- ---------- ---------- ---------- BACU018496/1-490 ----LCSFLP TSNMAVKLQS PLPP-WR-QL WLHAHFQKGL LPRGCGSECA 51 100 ENSP00000285848/1-495 GAKASPLPGK MAMGLMCGRR ELLRLLQSGR RVHSVAGPSQ WLGKPLTTRL ENSBTAP00000019736/1-441 ---------- MALALMCGRR QLLCLLRPQR QFHSVAGPCQ WPRKPLTAGL ENSTTRP00000001409/1-495 DANVSPLPGK MALGLMCGRR ELLRLLRPQR QFHSVAGPCQ WPRKALTAGL bmy_13944T0/1-466 ---------- MALGLMCGRR EXLRLLRPQR QFHSVAGPCQ WPRKALTARL BACU018496/1-490 DANISPLPDK MALGLMCGRR EFLRLLRPQR QFHSVAGPCQ WPRKALTARL 101 150 ENSP00000285848/1-495 LFPAAPCCCR PHYLFLAASG PRSLSTSAIS FAEVQVQAPP VVAATPSPTA ENSBTAP00000019736/1-441 GFPADRCLGH PRYVLLMAPG PRGLSTSAVS FGEAQVPAPP VIPATPPPTA ENSTTRP00000001409/1-495 RFPAGRCCGH PHYVLLAAPG PRGLSTSAIS FAEAQVQAPP VIPATPPPTA bmy_13944T0/1-466 RFPAGRCCGH PHCVLLAAPG PRGLSTSAIS FAEAQVQAPP VIPATPPPTA BACU018496/1-490 RFPDGRCCGH PHCVLLAAPG PRGLSTSAIS FAEAQVQAPP VIPATPPPTA 151 200 ENSP00000285848/1-495 VPEVASGETA DVVQTAAEQS FAELGLGSYT PVGLIQNLLE FMHVDLGLPW ENSBTAP00000019736/1-441 VPEVASGEAA DVIQAAAEQS FAELGLGSYT PVGLIQNLLE FMHVNLGLPW ENSTTRP00000001409/1-495 VPEVASGDTA DIILAAAEQS FTELGLGSYT PVGLIQNLLE FMHVNLGLPW bmy_13944T0/1-466 VPEVASGDTT DTILAAAEQS FTELGLGSYT PVGLIQNLLE FMHVNLGLPW BACU018496/1-490 VPEVASGDTT DTILAAAEQS FTELGLGSYT PVGLIQNLLE FMHVNLGLPW 201 250 ENSP00000285848/1-495 WGAIAACTVF ARCLIFPLIV TGQREAARIH NHLPEIQKFS SRIREAKLAG ENSBTAP00000019736/1-441 WGAIAACTVL ARCLVFPLIV KGQREAAKIH NHLPEIQKFS ARIREAKLTG ENSTTRP00000001409/1-495 WGAIAACTVL ARCLVFPLIV KGQREAANIH NHLPEIQKFS ARIREAKLTG bmy_13944T0/1-466 WGAIAACTVL ARCLVFPLIV KGQREAANIH NHLPEIQKFS ARIREAKLTG BACU018496/1-490 WGAIAACTVL ARCLVFPLIV KGQREAANIH NHLPEIQKFS ARIREARLTG 251 300 ENSP00000285848/1-495 DHIEYYKASS EMALYQKKHG IKLYKPLILP VTQAPIFISF FIALREMANL ENSBTAP00000019736/1-441 NHTEFYRASS EMTFYQKKHD IKLFRPLILP LTQAPIFISF FIALREMANL ENSTTRP00000001409/1-495 NHTEFYRASS EMTFYQKKHD IKLFRPLILP LTQAPIFISF FIALREMANL bmy_13944T0/1-466 NHTEFYRASS EMTFYQKKHD IKLFRPLILP LTQAPIFISF FIALREMANL BACU018496/1-490 NHTEFYRASS EMTFYQKKHD IKLFRPLILP LTQAPIFISF FIALREMANL 301 350 ENSP00000285848/1-495 PVPSLQTGGL WWFQDLTVSD PIYILPLAVT ATMWAVLELG AETGVQSSDL ENSBTAP00000019736/1-441 PVPSLQTGGL WWFQDLTLSD PIYVLPLVVT ATMWGVLELG AETGMQSSDL ENSTTRP00000001409/1-495 PVPSLQTGGL WWFQDLTLSD PTYMLPLVVT ATMWGVLELG AETGVQSSDL bmy_13944T0/1-466 PVPSLQTGGL WWFQDLTLSD PTYILPLVVT ATMWGVLELG AETGMQSSDL BACU018496/1-490 PVPSLQTGGL WWFQDLTLSD PTYILPLVVT ATMWGVLELG AETGMQSSDL 351 400 ENSP00000285848/1-495 QWMRNVIRMM PLITLPITMH FPT------- ---------- ---------- ENSBTAP00000019736/1-441 QWMRNFIRLM PLAVLPITIH FPT------- ---------- ---------- ENSTTRP00000001409/1-495 QWMRNFIRLM PLAVLPITIH FPA------- ---------- ---------- bmy_13944T0/1-466 QWMRNFIRLM PLAVLPITIH FPSVGNGLGA GSKSPGKLTR DATSEYLLFL BACU018496/1-490 QWMRNFIRLM PLAVLPITIH FPS------- ---------- ---------- 401 450 ENSP00000285848/1-495 ---AVFMYWL SSNLFSLVQV SCLRIPAVRT VLKIPQRVVH DLDKLPPREG ENSBTAP00000019736/1-441 ---AVFMYWL SSNMFSLGQV ACLRIPAVRT VLKIPQRVVH DPDKLAPREG ENSTTRP00000001409/1-495 ---AVFMYWL SSNVFSLGQV ACLRIPAVRT VLKIPQRVVH DSDKLPPQEG bmy_13944T0/1-466 LIQAVFMYWL SSNMFSLGQV ACLRIPAVRT VLKIPQRAVH DADKLPPREG BACU018496/1-490 ---AVFMYWL SSNMFSLGQV ACLRIPAVRT VLKIPQRVVH DADKLPPREG 451 500 ENSP00000285848/1-495 FLESFKKGWK NAEMTRQLRE REQRMRNQLE LAARGPLRQT FTHNPLLQPG ENSBTAP00000019736/1-441 FLKSFKQGWK NAEMAHQLQE RERRMQNHLE LAARGPLRQT FAHNPLLQHG ENSTTRP00000001409/1-495 FIKSFKTGWK NAEMAHQLQE RERRMRNHLE LAARGPLRQT FTHNPLLQHG bmy_13944T0/1-466 FIKSFKRGWK NAEMAHQLQE RERRMQNHLE LAARGPLRQT FTHNPLLQHG BACU018496/1-490 FIKSFKRGWK SAEMAHRLRE RERRTQDRLE LAARGPLRQT FTHNPLLQHG 501 550 ENSP00000285848/1-495 KDNPPNIP-- ----SSSSKP KSKYPWHDTL G ENSBTAP00000019736/1-441 KNDPPNTPNS SSSSSSSNKA KSKQPWRDTL G ENSTTRP00000001409/1-495 KNGPPNTPN- ----SSSNKP KSKHPWSDTL G bmy_13944T0/1-466 KNGPPNTPN- ----SSSNKA KSKHPWSDTL G BACU018496/1-490 KDGPPNTPS- ----SSSNKP KSKHPWSDTL G