KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:09:11 2014 Check: 00 .. Name: bmy_00097T0/1-433 Len: 550 Check: 5500 Weight: 1.00 Name: ENSP00000384625/1-527 Len: 550 Check: 7082 Weight: 1.00 Name: ENSBTAP00000019742/1-527 Len: 550 Check: 7082 Weight: 1.00 Name: BACU010515/1-527 Len: 550 Check: 7056 Weight: 1.00 Name: ENSTTRP00000009411/1-526 Len: 550 Check: 5749 Weight: 1.00 // 1 50 bmy_00097T0/1-433 ---------- ---------- ---------- ---------- ---------- ENSP00000384625/1-527 MSLCGARANA KMMAAYNGGT SAAAAGHHHH HHHHLPHLPP PHLHHHHHPQ ENSBTAP00000019742/1-527 MSLCGARANA KMMAAYNGGT SAAAAGHHHH HHHHLPHLPP PHLHHHHHPQ BACU010515/1-527 MSLCGARANA KMMAAYNGGT SAAAAGHHHH HHHHLPHLPP PHLHHHHHPQ ENSTTRP00000009411/1-526 MSLCGARANA KMMAAYNGGT SAAAAGHHHH HHHHLPHLPP PHLHHHHHPQ 51 100 bmy_00097T0/1-433 ---------- ---------- ---------- ---MLNPGQQ QPYFPSPAPG ENSP00000384625/1-527 HHLHPGSAAA VHPVQQHTSS AAAAAAAAAA AAAMLNPGQQ QPYFPSPAPG ENSBTAP00000019742/1-527 HHLHPGSAAA VHPVQQHTSS AAAAAAAAAA AAAMLNPGQQ QPYFPSPAPG BACU010515/1-527 HHLHPGSAAA VHPVQQHTSS AAAAAAAAAA AAAMLNPGQQ QPYFPSPAPG ENSTTRP00000009411/1-526 HHLHPGSAAA VHPVQQHTSS AAAAAAAAAA AAAMLNPGQQ QPYFPSPAPG 101 150 bmy_00097T0/1-433 QAPGPAAAAP AQVQAAAAAT VKAHHHQHSH HPQQQLDIEP DRPIGYGAFG ENSP00000384625/1-527 QAPGPAAAAP AQVQAAAAAT VKAHHHQHSH HPQQQLDIEP DRPIGYGAFG ENSBTAP00000019742/1-527 QAPGPAAAAP AQVQAAAAAT VKAHHHQHSH HPQQQLDIEP DRPIGYGAFG BACU010515/1-527 QAPGPAAAAP AQVQAAAAAT VKAHHHQHSH HPQQQLDIEP DRPIGYGAFG ENSTTRP00000009411/1-526 QAPGPAAAAP AQVQAAAAAT VKAHHHQHSH HPQQQLDIEP DRPIGYGAFG 151 200 bmy_00097T0/1-433 VVWSVTDPRD GKRVALKKMP NVFQNLVSCK RVFRELKMLC FFKHDNVLSA ENSP00000384625/1-527 VVWSVTDPRD GKRVALKKMP NVFQNLVSCK RVFRELKMLC FFKHDNVLSA ENSBTAP00000019742/1-527 VVWSVTDPRD GKRVALKKMP NVFQNLVSCK RVFRELKMLC FFKHDNVLSA BACU010515/1-527 VVWSVTDPRD GKRVALKKMP NVFQNLVSCK RVFRELKMLC FFKHDNVLSA ENSTTRP00000009411/1-526 VVWSVTDPRD GKRVALKKMP NVFQNLVSCK RVFRELKMLC FFKHDNVLSA 201 250 bmy_00097T0/1-433 LDILQPPHID YFEEMCTGPG KPYCFTQNVK LTFTRCQKNL NPELMQSDLH ENSP00000384625/1-527 LDILQPPHID YFEEI----- --YVVT---- ---------- --ELMQSDLH ENSBTAP00000019742/1-527 LDILQPPHID YFEEI----- --YVVT---- ---------- --ELMQSDLH BACU010515/1-527 LDILQPPHID YFEEI----- --YVVT---- ---------- --ELMQSDLH ENSTTRP00000009411/1-526 LDILQPPHID YFEEI----- --YVVT---- ---------- --ELMQSDLH 251 300 bmy_00097T0/1-433 KIIVSPQPLS SDHVKVFLYQ ILRGLKYLHS AGILHRDIKP GNLLVNSNCV ENSP00000384625/1-527 KIIVSPQPLS SDHVKVFLYQ ILRGLKYLHS AGILHRDIKP GNLLVNSNCV ENSBTAP00000019742/1-527 KIIVSPQPLS SDHVKVFLYQ ILRGLKYLHS AGILHRDIKP GNLLVNSNCV BACU010515/1-527 KIIVSPQPLS SDHVKVFLYQ ILRGLKYLHS AGILHRDIKP GNLLVNSNCV ENSTTRP00000009411/1-526 KIIVSPQPLS SDHVKVFLYQ ILRGLKYLHS AGILHRDIKP GNLLVNSNCV 301 350 bmy_00097T0/1-433 LKICDFGLAR VEELDESRHM TQEVVTQYYR APEILMGSRH YSNAIDIWSV ENSP00000384625/1-527 LKICDFGLAR VEELDESRHM TQEVVTQYYR APEILMGSRH YSNAIDIWSV ENSBTAP00000019742/1-527 LKICDFGLAR VEELDESRHM TQEVVTQYYR APEILMGSRH YSNAIDIWSV BACU010515/1-527 LKICDFGLAR VEELDESRHM TQEVVTQYYR APEILMGSRH YSNAIDIWSV ENSTTRP00000009411/1-526 LKICDFGLAR VEELDESRHM TQEVVTQYYR APEILMGSRH YSNAIDIWSV 351 400 bmy_00097T0/1-433 GCIFAELLGR RILFQAQSPI Q--------- ---------- ---------- ENSP00000384625/1-527 GCIFAELLGR RILFQAQSPI QQLDLITDLL GTPSLEAMRT ACEGAKAHIL ENSBTAP00000019742/1-527 GCIFAELLGR RILFQAQSPI QQLDLITDLL GTPSLEAMRT ACEGAKAHIL BACU010515/1-527 GCIFAELLGR RILFQAQSPI QQLDLITDLL GTPSLEAMRT ACEGAKAHIL ENSTTRP00000009411/1-526 GCIFAELLGR RILFQAQSPI QQLDLITDLL GTPSLEAMRT ACEGAKAHIL 401 450 bmy_00097T0/1-433 -----QPSLP VLYTLSSQAT HEAVHLLCRM LVFDPSKRIS AKDALAHPYL ENSP00000384625/1-527 RGPHKQPSLP VLYTLSSQAT HEAVHLLCRM LVFDPSKRIS AKDALAHPYL ENSBTAP00000019742/1-527 RGPHKQPSLP VLYTLSSQAT HEAVHLLCRM LVFDPSKRIS AKDALAHPYL BACU010515/1-527 RGPHKQPSLP VLYTLSSQAT HEAVHLLCRM LVFDPSKRIS AKDALAHPYL ENSTTRP00000009411/1-526 RGPHKQPSLP VLYTLSSQAT HEAVHLLCRM LVFDPSKRIS AKD-LAHPYL 451 500 bmy_00097T0/1-433 DEGRLRYHTC MCKCCFSTST GRVYTSDFEP ITNPKFDDTF EKNLSSVRQV ENSP00000384625/1-527 DEGRLRYHTC MCKCCFSTST GRVYTSDFEP VTNPKFDDTF EKNLSSVRQV ENSBTAP00000019742/1-527 DEGRLRYHTC MCKCCFSTST GRVYTSDFEP VTNPKFDDTF EKNLSSVRQV BACU010515/1-527 DEGRLRYHTC MCKCCFSTST GRVYTSDFEP ITNPKFDDTF EKNLSSVRQV ENSTTRP00000009411/1-526 DEGRLRYHTC MCKCCFSTST GRVYTSDFEP ITNPKFDDTF EKNLSSVRQV 501 550 bmy_00097T0/1-433 KEIIHQFILE QQKGNRVPLC INPQSAAFKS FISSTVAQPS EMPPSPLVWE ENSP00000384625/1-527 KEIIHQFILE QQKGNRVPLC INPQSAAFKS FISSTVAQPS EMPPSPLVWE ENSBTAP00000019742/1-527 KEIIHQFILE QQKGNRVPLC INPQSAAFKS FISSTVAQPS EMPPSPLVWE BACU010515/1-527 KEIIHQFILE QQKGNRVPLC INPQSAAFKS FISSTVAQPS EMPPSPLVWE ENSTTRP00000009411/1-526 KEIIHQFILE QQKGNRVPLC INPQSAAFKS FISSTVAQPS EMPPSPLVWE