KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:09:12 2014 Check: 00 .. Name: ENSTTRP00000016010/1-947 Len: 1269 Check: 61 Weight: 1.00 Name: BACU012955/1-1248 Len: 1269 Check: 5731 Weight: 1.00 Name: ENSP00000379773/1-971 Len: 1269 Check: 7548 Weight: 1.00 Name: bmy_06507T0/1-950 Len: 1269 Check: 9761 Weight: 1.00 Name: ENSBTAP00000019746/1-972 Len: 1269 Check: 6760 Weight: 1.00 // 1 50 ENSTTRP00000016010/1-947 MSSVSEERRK RQQNIKEGLQ FIQSPLSYPG TQEQYAVYLR ALVRNLFNEG BACU012955/1-1248 ---------- ---------- LLRSPLSYPG TQEQYAVYLR ALVRNLFNEG ENSP00000379773/1-971 MSNVSEERRK RQQNIKEGLQ FIQSPLSYPG TQEQYAVYLR ALVRNLFNEG bmy_06507T0/1-950 MSSVSEERRK RQQNIKEGLQ FIQSPLSYPG TQEQYAVYLR ALVRNLFNEG ENSBTAP00000019746/1-972 MSSVSEERRK RQQNIKEGLQ FIQSPLSYPG TQEQYAVYLH ALVRNLFNEG 51 100 ENSTTRP00000016010/1-947 NDVYRERDWN NSMSQYSEAL SIADYAKSEE ILIPKEIIEK LYINRIACYS BACU012955/1-1248 NDVYRERDWN NSMSQYSEAL SIADYAKSEE ILIPKEIIEK LYINRIACYS ENSP00000379773/1-971 NDVYREHDWN NSISQYTEAL NIADYAKSEE ILIPKEIIEK LYINRIACYS bmy_06507T0/1-950 NDVYRERDWN NSMSQYSEAL SIADYAKSEE ILIPKEIIEK LYINRIACYS ENSBTAP00000019746/1-972 NDVYRERDWN HSISQYSEAL SIADYAKSEE ILIPKEIIEK LYINRIACYS 101 150 ENSTTRP00000016010/1-947 NMGFHDKVLE DCDTVLSLNA SNCKALYRKS KALSDLGRYK EAYDAVAKCS BACU012955/1-1248 NMGFHDKVLE DCDTVLSLNA SNCKALYRKS KALSDLGRYK EAYDAVAKCS ENSP00000379773/1-971 NMGFHDKVLE DCNIVLSLNA SNCKALYRKS KALSDLGRYK KAYDAVAKCS bmy_06507T0/1-950 NMGFHDKVLE DCDTVLSLNA SNCKALYRKS KALSDLGRYK EAYDAVAKCS ENSBTAP00000019746/1-972 NMGFHDKVLE DCDTVLSLNA SNYKALYRKS KALSDLGRFR EAYDAVAKCS 151 200 ENSTTRP00000016010/1-947 LAVPQDEHVI KLTQELAQKL GFKIRKAYVR TELSLKTVPG DGATK----- BACU012955/1-1248 LAVPQDEHVI KLTQELAQKL GFKIRKAYVR TELSLKTVPG DGATKALNSS ENSP00000379773/1-971 LAVPQDEHVI KLTQELAQKL GFKIRKAYVR AELSLKSVPG DGATKALNHS bmy_06507T0/1-950 LAVPQDEHVI KLTQELAQKL GFKIRKAYVR TELSLKTVPG DGATKALNSS ENSBTAP00000019746/1-972 LAVPQDEHVI KLTQELAQKL GFKIRKAYVR AELSLKSVPG DGATKALNCS 201 250 ENSTTRP00000016010/1-947 ----EPDLLT PRQEAVP-VS IPASSFSXXX XXXXXXXXXX XXXXXXXXXX BACU012955/1-1248 VEDIEPDLLT PRQEAVPVVS IPASSFSHQV GNELASVPIM PLTSILPLQV ENSP00000379773/1-971 VEDIEPDLLT PRQEAVPVVS LPAPSFSHEV GSELASVPVM PLTSILPLQV bmy_06507T0/1-950 VEDIEPDLLT PRQEAVPVVS IPASSFSHQV GNELASVPIM PLTSILPLQV ENSBTAP00000019746/1-972 VEDIEPDLLT PRQEALSVVS IPASSFSHQV GNELASISIM PLTSVLPLQV 251 300 ENSTTRP00000016010/1-947 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXV BACU012955/1-1248 EESSLPSTVL ANGGKIPFSM PEAFLDDGDM VLGDEIDDLL DSAPETNETV ENSP00000379773/1-971 EESALPSAVL ANGGKMPFTM PEAFLDDGDM VLGDELDDLL DSAPETNETV bmy_06507T0/1-950 EESSLPSTVL ANGGKIPFSM PEAFLDDGDM VLGDEIDDLL DSAPETNETV ENSBTAP00000019746/1-972 EESSLPSTVL ANGGKMPFGT PEVFLDDGDM VLGDEIDDLL DSAPEANETV 301 350 ENSTTRP00000016010/1-947 MPSALVRGPL PTASVAPSIP FS-ASLLGAL PIGARYAPAP SFSELYPPLT BACU012955/1-1248 MPSALVRGPL PTASVAPSIP FS-ASLLGAL PIGARYAPAP SFSELYPPLT ENSP00000379773/1-971 MPSALVRGPL QTASVSPSMP FS-ASLLGTL PIGARYAPPP SFSEFYPPLT bmy_06507T0/1-950 MPSALVRGPL PTASVAPSIP FS-ASLLGAL PIGARYAPAP SFSELYPPLT ENSBTAP00000019746/1-972 MPSALVRGPL PTASIGPSVP FSAASLLGAL PIGARYAPAP SFSELYPPLT 351 400 ENSTTRP00000016010/1-947 SSLEDFCSSL NSFSMSESKR DLSTSTSREG TPLNNSNSSL LLMNGPGSLF BACU012955/1-1248 SSLEDFCSSL NSFSMSESKR DLSTSTSREG TPLNNSNSSL LLMNGPGSLF ENSP00000379773/1-971 SSLEDFCSSL NSFSMSESKR DLSTSTSREG TPLNNSNSSL LLMNGPGSLF bmy_06507T0/1-950 SSLEDFCSSL NSFSMSESKR DLSTSTSREG TPLNNSNSSL LLMNGPGSLF ENSBTAP00000019746/1-972 SSLEDFCSSL NSFSMSESKR DLSTSTSREG TALNNSNSSL LLMNGPGSLF 401 450 ENSTTRP00000016010/1-947 ASESFLGMSS HPRNDFGNFF GSAVTKPPSS VTPRHPLEGT HELRQACQIC BACU012955/1-1248 ASESFLGMSS HPRNDFGNFF GSAVTKPPSS VTPRHPLEGT HELRQACQIC ENSP00000379773/1-971 ASENFLGISS QPRNDFGNFF GSAVTKPSSS VTPRHPLEGT HELRQACQIC bmy_06507T0/1-950 ASESFLGMSS HPRNDFGNFF GSAVTKPPSS VTPRHPLEGT HELRQACQIC ENSBTAP00000019746/1-972 ASESFLGISS HPRNDFGNFF GSAVTKPTSS VTPRHPLEGT HELRQACQIC 451 500 ENSTTRP00000016010/1-947 FVKSGPKLMD FTYHANIDHK CKKDILIGRI KNVEDKSWKK IRPRPTKTNY BACU012955/1-1248 FVKSGPKLMD FTYHANIDHK CKKDILIGRI KNVEDKSWKK IRPRPTKTNY ENSP00000379773/1-971 FVKSGPKLMD FTYHANIDHK CKKDILIGRI KNVEDKSWKK IRPRPTKTNY bmy_06507T0/1-950 FVKSGPKLMD FTYHANIDHK CKKDILIGRI KNVEDKSWKK IRPRPTKTNY ENSBTAP00000019746/1-972 FVKSGPKLMD FTYHANLDHK CKKDILIGRI KNVEDKSWKK IRPRPTKTNY 501 550 ENSTTRP00000016010/1-947 EGPYYICKDV AAEEECRYLG HCTFAYCQEE IDVWTLERKG AFSREAFFGG BACU012955/1-1248 EGPYYICKDV AAEEECRYLG HCTFAYCQEE IDVWTLERKG AFSREAFFGG ENSP00000379773/1-971 EGPYYICKDV AAEEECRYSG HCTFAYCQEE IDVWTLERKG AFSREAFFGG bmy_06507T0/1-950 EGPYYICK-- ---------- ---------E IDVWTLERKG AFSREAFFGG ENSBTAP00000019746/1-972 EGPYYICKDV AAEEECRYSG HCTFAYCQEE IDVWTLERKG AFSREAFFGG 551 600 ENSTTRP00000016010/1-947 NGKINLSVFK LLQEHLGEFI FLCEKCFDHK PRMISKRNKD NSTSCSHPVT BACU012955/1-1248 NGKINLTVFR LLQEHLGEFI FLCEKCFDHK PRMISKRNKD NSTSCSHPVT ENSP00000379773/1-971 NGKINLTVFK LLQEHLGEFI FLCEKCFDHK PRMISKRNKD NSTACSHPVT bmy_06507T0/1-950 NGKINLTVFR LLQEHLGEFI FLCEKCFDHK PRMISKRNKD NSTSCSHPVT ENSBTAP00000019746/1-972 NGKISFTVFR LFQEHLGEFI FLCEKCFDHK PRMISKRNKD NSTSCSHPVT 601 650 ENSTTRP00000016010/1-947 KHEFEDNKCL VHI-RETT-- ---------- -QLDLCRHEV RYGCLREDEC BACU012955/1-1248 KHEFEDNKCL VHILRETTVK YSKIRSFHGQ CQLDLCRHEV RYGCLREDEC ENSP00000379773/1-971 KHEFEDNKCL VHILRETTVK YSKIRSFHGQ CQLDLCRHEV RYGCLREDEC bmy_06507T0/1-950 KHEFEDNKCL VHILRETTVK YSKIRSFHGQ CQLDLCRHEV RYGCLREDEC ENSBTAP00000019746/1-972 KHEFEDNKCL VHILRETTVK YSKIRSFHGQ CQLDLCRHEV RYGCLREDEC 651 700 ENSTTRP00000016010/1-947 FYAHSLVELK VWILQNETSI SHDAIAQESK RYWQNLEANV PGAQVLGNQI BACU012955/1-1248 FYAHSLVELK VWILQNETGI SHDAIAQESK RYWQNLEANV PGAQVLGNQI ENSP00000379773/1-971 FYAHSLVELK VWIMQNETGI SHDAIAQESK RYWQNLEANV PGAQVLGNQI bmy_06507T0/1-950 FYAHSLVELK VWILQNETGI SHDAIAQESK RYWQNLEANV PGAQVLGNQI ENSBTAP00000019746/1-972 FYAHSLVELK VWILQNETGI SHDDIAQESK RYWQNLEANV PGAQVLGNQI 701 750 ENSTTRP00000016010/1-947 MPGSLNMKIK FVCAQCLRNG QVIEPDKNRK YCSAKARHSW TKDRRAMRVM BACU012955/1-1248 MPGSLNMKIK FVCAQCLRNG QVIEPDKNRK YCSAKARHSW TKDRRAMRVM ENSP00000379773/1-971 MPGFLNMKIK FVCAQCLRNG QVIEPDKNRK YCSAKARHSW TKDRRAMRVM bmy_06507T0/1-950 MPGSLNMKIK FVCAQCLRNG QVIEPDKNRK YCSAKARHSW TKDRRAMRVM ENSBTAP00000019746/1-972 MPGSLNMKIK FVCAQCLRNG QVIEPDKNRK YCSAKARHSW TKDRRAMRVM 751 800 ENSTTRP00000016010/1-947 SIERKKWMNI RPLPTKKQMP LQFDXXXXXX XXXXXXXXXX XXXXXXXXXX BACU012955/1-1248 SIERKKWMNI RPLPTKKQMP LQFDLCNHIA SGKKCQYVGN CSFAHSPEER ENSP00000379773/1-971 SIERKKWMNI RPLPTKKQMP LQFDLCNHIA SGKKCQYVGN CSFAHSPEER bmy_06507T0/1-950 SIERKKWMNI RPLPTKKQMP LQFDLCNHIA SGKKCQYVGN CSFAHSPEER ENSBTAP00000019746/1-972 SIERKKWMNI RPLPTKKQMP LQFDLCNHIA SGKKCQYIGN CSFAHSPEER 801 850 ENSTTRP00000016010/1-947 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU012955/1-1248 EVWTYMKENG IQDMEQFYEL WLKSQKNEKS DDVASQSNKE NGKQIHMPTD ENSP00000379773/1-971 EVWTYMKENG IQDMEQFYEL WLKSQKNEKS EDIASQSNKE NGKQIHMPTD bmy_06507T0/1-950 EVWTYMKENG IQDMEQFYEL WLKSQKNEKS DDVASQSNKE NGKQIHMPTD ENSBTAP00000019746/1-972 EVWTYMKENG IQDMEQFYEL WLKSQKSEKS DDAASQSSKE NGKQIHMPTD 851 900 ENSTTRP00000016010/1-947 XXXXXVDFHC WMCGKNCNSE KQWQGHISSE KHKEKVFHTE DDQYCWQHRF BACU012955/1-1248 YAEVTVDFHC WMCGKNCNSE KQWQGHISSE KHKEKVFHTE DDQYCWQHRF ENSP00000379773/1-971 YAEVTVDFHC WMCGKNCNSE KQWQGHISSE KHKEKVFHTE DDQYCWQHRF bmy_06507T0/1-950 YAEVTVDFHC WMCGKNCNSE KQWQGHISSE KHKEKVFHTE DDQYCWQHRF ENSBTAP00000019746/1-972 YAEVTVDFHC WMCGKNCNSE KQWQGHISSE KHKEKVFHTE DDQYCWQHRF 901 950 ENSTTRP00000016010/1-947 PTGYFSICDR ---------- ---------- ---------- ---------- BACU012955/1-1248 PTGYFSICDS RAKDVIIPAK PPVSFFSSRS PVLDLFQGQL DYAEHIRQDS ENSP00000379773/1-971 PTGYFSICDR ---------- ---------- ---------- ---------- bmy_06507T0/1-950 PTGYFSICDR ---------- ---------- ---------- ---------- ENSBTAP00000019746/1-972 PTGYFSICDR ---------- ---------- ---------- ---------- 951 1000 ENSTTRP00000016010/1-947 ---------- ---------- ---------- ---------- ---------Y BACU012955/1-1248 EVVLLFFYAP WCGQSIAARA EIEQVASQLS DQPGVLGYFE FSGSPQPPGY ENSP00000379773/1-971 ---------- ---------- ---------- ---------- ---------Y bmy_06507T0/1-950 ---------- ---------- ---------- ---------- ---------Y ENSBTAP00000019746/1-972 ---------- ---------- ---------- ---------- ---------Y 1001 1050 ENSTTRP00000016010/1-947 M--------- ---------N GTCTEGSS-- ---------- ---------- BACU012955/1-1248 LTFFTSALHS LKKVSPSRPS SECLSGGGWI DVSQNDLPWE FMVDRLPTVL ENSP00000379773/1-971 M--------- ---------N GTCPEGNS-- ---------- ---------- bmy_06507T0/1-950 M--------- ---------N GTCTEGSS-- ---------- ---------- ENSBTAP00000019746/1-972 M--------- ---------N GTCTEGSS-- ---------- ---------- 1051 1100 ENSTTRP00000016010/1-947 ---------- CKFAHG---- ---------- ---------- ---------- BACU012955/1-1248 FFPCNRKDLS VKYPEDLPIT LPNLLRFILH HSDPASAPQN LVNPPTKECL ENSP00000379773/1-971 ---------- CKFAHG---- ---------- ---------- ---------- bmy_06507T0/1-950 ---------- CKFAHG---- ---------- ---------- ---------- ENSBTAP00000019746/1-972 ---------- CKFAHG---- ---------- ---------- ---------- 1101 1150 ENSTTRP00000016010/1-947 ---------- ---------- -NAELHEWEE RRDALKMKLN KARKD----- BACU012955/1-1248 QREAVLQQGH ISHLEREIQK LRAEISALQQ AQGQVEARLS STRRDEQQLR ENSP00000379773/1-971 ---------- ---------- -NAELHEWEE RRDALKMKLN KARKD----- bmy_06507T0/1-950 ---------- ---------- -NAELHEWEE RRDALKMKLN KARKD----- ENSBTAP00000019746/1-972 ---------- ---------- -NAELHEWEE RRDALKMKLN KARKD----- 1151 1200 ENSTTRP00000016010/1-947 ---HLIAPND NDFGKYSFLF KDLN------ ---------- ---------- BACU012955/1-1248 RRQHTLERQR SLLQRHSEQL QALHEQKSRQ LEEVARQLQE LADASENLLT ENSP00000379773/1-971 ---HLIGPND NDFGKYSFLF KDLN------ ---------- ---------- bmy_06507T0/1-950 ---HLIAPND NDFGKYSFLF KDLN------ ---------- ---------- ENSBTAP00000019746/1-972 ---HLIAPND NDFGKYSFLF KDLN------ ---------- ---------- 1201 1250 ENSTTRP00000016010/1-947 ---------- ---------- ---------- ---------- ---------- BACU012955/1-1248 ENTWLKILVA TMEQKLEGRD GAEGRAPPDE ARSDYRKPSG APRLPASTPP ENSP00000379773/1-971 ---------- ---------- ---------- ---------- ---------- bmy_06507T0/1-950 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019746/1-972 ---------- ---------- ---------- ---------- ---------- 1251 1300 ENSTTRP00000016010/1-947 ---------- --------- BACU012955/1-1248 PSNVSSTLAS ERSTENRTD ENSP00000379773/1-971 ---------- --------- bmy_06507T0/1-950 ---------- --------- ENSBTAP00000019746/1-972 ---------- ---------