KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:09:13 2014 Check: 00 .. Name: ENSTTRP00000010520/1-428 Len: 509 Check: 4910 Weight: 1.00 Name: ENSP00000344140/1-425 Len: 509 Check: 8985 Weight: 1.00 Name: ENSBTAP00000019750/1-428 Len: 509 Check: 9085 Weight: 1.00 Name: bmy_17460T0/1-426 Len: 509 Check: 4956 Weight: 1.00 Name: BACU005395/1-449 Len: 509 Check: 3688 Weight: 1.00 // 1 50 ENSTTRP00000010520/1-428 MMGKLPLGVV SPYVKMSSGG CTDPLKFYAT SYCIAYGRED FKPRMGTHHG ENSP00000344140/1-425 MMGKLPLGVV SPYVKMSSGG YTDPLKFYAT SYCTAYGRED FKPRVGSHVG ENSBTAP00000019750/1-428 MMGKLPLGVV SPYVKMSSGG CTDPLKFYAT SYCTAYGRED FKPRVGSHRG bmy_17460T0/1-426 MMGKLPLGVV SPYVKMSSGG CTDPLKFYAT SYCTAYGRED FKPRMGSHQG BACU005395/1-449 MMGKLPLGVV SPYVKMSSGG CTDPLKFYAT SYCTAYGRED FKPRMRSHQG 51 100 ENSTTRP00000010520/1-428 TGYRSNYRPV VSCQPNLSAL DNPAVG---- ---------- ---------- ENSP00000344140/1-425 TGYKSNFQPV VSCQASLEAL DNPARG---- ---------- ---------- ENSBTAP00000019750/1-428 TGYKSNYRPV VSYQPHLDAL DNTATG---- ---------- ---------- bmy_17460T0/1-426 TGYKSNYRPV VSYQPNLDAL DNPAMGYSRS NPSSPPALPG LSPQGHRTSS BACU005395/1-449 TGYKSNYRPV VSYQPNPDAL DNPAMG---- ---------- ---------- 101 150 ENSTTRP00000010520/1-428 ---------- ---------- ---------- ------EQVC NNFQTVTSQS ENSP00000344140/1-425 ---------- ---------- ---------- ------EQAQ DHFQSVASQS ENSBTAP00000019750/1-428 ---------- ---------- ---------- ------EQGC NNFQTVTSQS bmy_17460T0/1-426 DQLQAPRMGS GVLGDSGPGP QPGAQRQADS RGCCGRAQVC NNFQTVTSQS BACU005395/1-449 ---------- ---------- ---------- ------AQVC NNFQTVTSQS 151 200 ENSTTRP00000010520/1-428 SRPLEVPDGK YPLLWNMHQT HPGSSREKAW EATPTREVRK VHFDTQDCGP ENSP00000344140/1-425 YRPLEVPDGK HPLPWSMRQT SSGYGREKPS AGPPTKEVRK VHFDTQEHGP ENSBTAP00000019750/1-428 YRPLEVPDGT HPLPWNLHQT NSGYSREKAS AVTPIKEVRK VHFDTQDYGP bmy_17460T0/1-426 YRPLEVPDGK YPLPWNMHQT HPGSSWEKAR EATPTRE--- ------DYGP BACU005395/1-449 YRPLEVPDGK YPLPWNMHQT HPGSSREKAM AVTPTREVRK VHFDTQDYGP 201 250 ENSTTRP00000010520/1-428 QAIKGLEPKE VPLLHRQQNK GSLEWEDARH GPRFMTSEYD PKYLKEPSNQ ENSP00000344140/1-425 QAITGLEPRE VPLLHQQQGQ DPLERENFRH GPRFMTSEYN SKYLRDPLDQ ENSBTAP00000019750/1-428 QAITGLEPKD APLLHQQQNK GSLEWENAGH GPRFMTSEYN SKYLKEPSHQ bmy_17460T0/1-426 QAIKGLEPKE VPLLHQQQNK GSLEWENARH GPRFMTSEYN SKYLKEPSNQ BACU005395/1-449 QAIKGLEPKE VPLLHQQQNK GSLEWENARH GPRFMTSEYN SKYLKEPSNQ 251 300 ENSTTRP00000010520/1-428 PDLLQKKSAG AKEETGLTEA SNKSPIIFQP PSQVLPGDPV LLPSRSVTKS ENSP00000344140/1-425 PDFLQKKSIG AKEGSGFTKQ SHQSPIVFQP PSQALPGDPA LLPGQSVTKS ENSBTAP00000019750/1-428 PDLLQKNSVG AKEETGFTEE SNKNPIVFQP PSQALPGDPV LLPGRSVTKS bmy_17460T0/1-426 PDLLQKKSVG AKEETGLTED SNKNPVIFQP PSQVLPGEPV LLPGRSVTKS BACU005395/1-449 PDLLQKKSIG AKEETGLTKD SNKNPVIFQP PPQALPGEPV LLPGRSVTKS 301 350 ENSTTRP00000010520/1-428 DFLLMTHPHG DEFLPXXXXX XXXXXXXXXX XXXXXXXXVP PSGPEPSSMN ENSP00000344140/1-425 DFLPKTHLHG DEFLPVLARG SKRETAFSRG NERILNPRVP PPCPEPSSVS ENSBTAP00000019750/1-428 DFLPISHPHG DEFLPVLARG SERETGFSRV NERTLNPRVP PPCPEPSSMN bmy_17460T0/1-426 DFLPMTHPHG DEFLPVLARG SERETGFSRV NERTLNPRVP PSGPEPSSMN BACU005395/1-449 DFLPMTHPHG DEFLPLLARG SERETGFSRV NERTLNPRVP PSGPEPSSMN 351 400 ENSTTRP00000010520/1-428 HWQFQPPQRM QQTNVALLGQ ETVWKKEPTG FSLNNPSYVR SPYDPDLDNR ENSP00000344140/1-425 HQQFQPLHRM QQTNVALLGR ETVGKKEPTG FSLNNPMYVR SPCDPDRDQR ENSBTAP00000019750/1-428 HWQFQSPQRM QQTNVALLGR ETVGNKEPSG FSLNNPSYVR SPYDPDMDNR bmy_17460T0/1-426 HRQFQPLQRM QQTNVALLGR ETVGKKEPT- ---------- ---------- BACU005395/1-449 HRQFQPPQKM QQTNVALLGR ETVGKKEPTG FSLNNPSYVR SPYDPDLDNR 401 450 ENSTTRP00000010520/1-428 YLTTYNQ--- ---------- --------GX XXXXXXXXXX XXXXXXXXXX ENSP00000344140/1-425 YLTTYNQ--- ---------- --------GY FENIPKGLDQ EGWTRGGIQP ENSBTAP00000019750/1-428 YLTTYNQ--- ---------- --------GY FENIPKGLDR EGWTRGGLQP bmy_17460T0/1-426 ---------- ---------- --------GY FENIPKGLDR EGWTRGGVQP BACU005395/1-449 YLTTYNQGYV RSPYDPDLDN RYLTTYNQGY FENIPKGLDR EGWTRGGVQP 451 500 ENSTTRP00000010520/1-428 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXYRATPPGS ENSP00000344140/1-425 QMPGGYALSQ PVSCMEATPN PMESLRHLHP HVGRTLTSAD PFYQNTP--- ENSBTAP00000019750/1-428 QKPGGYALNQ PVTRLEATPT PTESLRRLHP HVGRTLISVD PFYRTAPPSG bmy_17460T0/1-426 QKPGGYALNQ PVTRLEATPN PTESLRRLHP HVGR------ ---------- BACU005395/1-449 QKPGGYALNR PVTRLEATPN PTESLRRLRP HVGRTLVSAD PFYRATPPGS 501 550 ENSTTRP00000010520/1-428 HGSGFAVPL ENSP00000344140/1-425 HSSRCVAHS ENSBTAP00000019750/1-428 HVSRFTAPN bmy_17460T0/1-426 --------- BACU005395/1-449 HGSGFTAPL