KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:09:19 2014 Check: 00 .. Name: ENSP00000254227/1-257 Len: 260 Check: 7122 Weight: 1.00 Name: ENSTTRP00000015812/1-251 Len: 260 Check: 4325 Weight: 1.00 Name: ENSBTAP00000019772/1-260 Len: 260 Check: 6395 Weight: 1.00 Name: bmy_02006T0/1-260 Len: 260 Check: 6093 Weight: 1.00 Name: BACU003235/1-260 Len: 260 Check: 5792 Weight: 1.00 // 1 50 ENSP00000254227/1-257 MSTSQPGACP CQGAASRPAI LYALLSSSLK ---AVPRPRS RCLCRQHRPV ENSTTRP00000015812/1-251 MSSSQPGTCP CQGAAVRPII LYALLSI--- ---VTAPQPC RC-CAQHR-V ENSBTAP00000019772/1-260 MSSSQPGPCP CQGAAGHPTI LYTLLSPRVR DRPSVAPARG RCLCRQHRPV bmy_02006T0/1-260 MSSSQPGTCP CQGAAGRPTI LYALLSPSVR GWPSVPPARG RCLCRQHRPV BACU003235/1-260 MSSSQPGTCP CQGAAGRPTI LYALLSPSVR DWPSVPPARG RCLCRQHRPV 51 100 ENSP00000254227/1-257 QLCAPHRTCR EALDVLAKTV AFLRNLPSFW QLPPQDQRRL LQGCWGPLFL ENSTTRP00000015812/1-251 RLXXXXXXXX XXXXXXXXXX AFLR-LPSFC QLPPQDRRQL LRCCWGPLFL ENSBTAP00000019772/1-260 QLCTPHRTCR EALDVLAKTL AFLRNLPSFC QLPHHDRRQL LRGCWGPLFL bmy_02006T0/1-260 RLCTPHRTCR EALDVLAKTL AFLRNLPSFC QLPPQDRRQL LRGCWGPLFL BACU003235/1-260 RLCTPHRTCR EALDVLAKTL AFLRNLPSFC QLHPQDRRQL LRGCWGPLFL 101 150 ENSP00000254227/1-257 LGLAQDAVTF EVAEAPVPSI LKKILLEEPS SSGGSGQLPD RPQPSLAAVQ ENSTTRP00000015812/1-251 LGLAQDTVTF EVAELPVPSI LKKILLEEPT SGAGHGQVLD RPQPSLAAVQ ENSBTAP00000019772/1-260 LGLAQDTVTF QVAEVPMPSI LKKILLEKPS NGAGSSQRPD RPQPSLAEVQ bmy_02006T0/1-260 LGLAQDTVTF EVAEVPVPSI LKKILLEEPT SGAGNGQVPD RPQPSLAAVQ BACU003235/1-260 LGLAQDTVTF EVAEVPVPSI LKKILLEEPT SGAGNGQVPD RPQPSLAAVQ 151 200 ENSP00000254227/1-257 WLQCCLESFW SLELSPKEYA CLKGTILFNP DVPGLQAASH IGHLQQEAHW ENSTTRP00000015812/1-251 WLQCCLESFW SLELGPKEYA YLKGTILFNP DVPGLHASSH IGHLQQEAHQ ENSBTAP00000019772/1-260 WLQCCLESFW SLELGPKEYA YLKGTILFNP DVPGLYASSH IGHLQQEAHQ bmy_02006T0/1-260 WLQCCLESFW SLELGPKEYA YLKGTILFNP DVPGLHASSH IGHLQQEAHQ BACU003235/1-260 WLQCCLESFW SLELGPKEYA YLKGTILFNP DVPGLHASSH IGHLQQEAHQ 201 250 ENSP00000254227/1-257 VLCEVLEPWC PAAQGRLTRV LLTASTLKSI PTSLLGDLFF RPIIGDVDIA ENSTTRP00000015812/1-251 ALWEVLEPWC PAGQSRLARV LLTASTLKSV PPSLLGDLFF HPVIGDVDIA ENSBTAP00000019772/1-260 ALWEVLEPWC PAGQSRLARV LLTASTLKSI PPSLLGDLFL RPVIGDVDIA bmy_02006T0/1-260 ALWEVLEPWC PAGQSRLARV LLTASTLKSV PPSLLGDLFF HPVIGDVDIA BACU003235/1-260 ALWEVLEPWC PAGQSRLARV LLTASTLKSV PPSLLGDLFF HPVIGDVDIA 251 300 ENSP00000254227/1-257 GLLGDMLLLR ENSTTRP00000015812/1-251 GLLEDMLLLR ENSBTAP00000019772/1-260 DLLEDMLLLS bmy_02006T0/1-260 GLLEDMLLLR BACU003235/1-260 GLLEDMLLLR