KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:09:21 2014 Check: 00 .. Name: ENSP00000384432/1-302 Len: 429 Check: 2219 Weight: 1.00 Name: ENSBTAP00000019810/1-305 Len: 429 Check: 5518 Weight: 1.00 Name: bmy_21208T0/1-326 Len: 429 Check: 238 Weight: 1.00 Name: ENSTTRP00000003064/1-424 Len: 429 Check: 8742 Weight: 1.00 // 1 50 ENSP00000384432/1-302 MRLGSPGLLF LLFSSLRADT QEKEVRAMVG SDVELSCACP EGSRFDLNDV ENSBTAP00000019810/1-305 MRPRSPGLFL LLLWGLQAES QEE-VRAMVG SDVQLRCIYP EKNSFDLNDL bmy_21208T0/1-326 ---------- -----MLAEI QEEXVRAMVG SDVWLSCIYP KGNSFDLNDL ENSTTRP00000003064/1-424 MRPRSPGLLL LLLCGLRAEI QEEAIRAMVG SDVWLSCTYP EGNTFDLNDL 51 100 ENSP00000384432/1-302 YVYWQTS--- --ESKTVVTY HIPQNSSLEN VDSRYRNRAL MSPAGMLRGD ENSBTAP00000019810/1-305 YVYWQISMAG KGNVDSVVTY HLSGNSSASH GDNHYKDRAR LSLDSMKQGD bmy_21208T0/1-326 YVYWQISVPG KRNTNSVVTY YLSGNSSAGH GDNHYKGRAR LSLDGMKQGN ENSTTRP00000003064/1-424 YVYWQISVPG KQNTNSVVTY YLSGNSSAGH VNNHYKDRAR LSLDGMKQGD 101 150 ENSP00000384432/1-302 FSLRLFNVTP QDEQKFHCLV LSQSLGFQEV LSVEVTLHVA ANFSVPVVSA ENSBTAP00000019810/1-305 FSLHLRNVTP QDEQKFNCLV FRKSLELKKI LEVAVTLHVA ANYSMPVVSG bmy_21208T0/1-326 FSLHLHNVTP QDEQKFNCLV FRKSLELEKI LEVTVTLNVA ANYSMPVVSG ENSTTRP00000003064/1-424 FSLHLHNVTP QDEQKFNCLV FRKSLELEKI LEVTVTLNVA ANYSMPVVSG 151 200 ENSP00000384432/1-302 PHSPSQDELT FTCTSINGYP RPNVYWINKT DNSLLDQALQ NDTVFLNMRG ENSBTAP00000019810/1-305 P--SQDEELT FTCTSTNGYP RPNVYWINKT DNSVLDSALQ NNTVSLNARG bmy_21208T0/1-326 P--SQDEEFI FTCTSTNGYP RPNVYWINKT DNSLLDDTLQ NSTVSLNARG ENSTTRP00000003064/1-424 P--SQDEELV FTCTSTNGYP WPKVYWINKT DNSLLDDALQ NSTVSLNARG 201 250 ENSP00000384432/1-302 LYDVVSVLRI ARTPSVNIGC CIENVLLQQN LTVGSQTGND IGERDKITEN ENSBTAP00000019810/1-305 LYDVVSVLRI GRTPHVNVGC CIENVLLHQN LTSG-QTETF TGTKDSITED bmy_21208T0/1-326 LYNVVSVLRI GRSPTVDVGC CIENVLLHQN LTSS-QTETF TGTKDSITED ENSTTRP00000003064/1-424 LYNVVSVLRI GRSPPVDVGC CIENVLLHQN LTSS-QTEMF MGTKDSITED 251 300 ENSP00000384432/1-302 PV--STGEKN AATWSILAVL CLLVVVAVAI GWVCRDRCLQ HSYAGAWAVS ENSBTAP00000019810/1-305 PVDGSPSGKH QQVFSVLAVL AVIVLLALAT GWLCRSRCPP KSQTGAQVAR bmy_21208T0/1-326 PVDDTQDAVN RPVLSVLAVL VVAVAMAVAT GWLCRSRCPY RSYAGAQAAR ENSTTRP00000003064/1-424 PVDDTQDAVN PPVLSVLAVL VVAVAVAVAT GWLCRRRCPD RSYAGAQAAR 301 350 ENSP00000384432/1-302 PETELTGHV- ---------- ---------- ---------- ---------- ENSBTAP00000019810/1-305 PKLALAGEF- ---------- ---------- ---------- ---------- bmy_21208T0/1-326 PELELTGQFA RREG-DPWRN CGS------- ---------- ---------- ENSTTRP00000003064/1-424 PELELTGQFA --EGRRPWRK RGGLELSLCA AFARVLLDDQ AFPERRNPKR 351 400 ENSP00000384432/1-302 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019810/1-305 ---------- ---------- ---------- ---------- ---------- bmy_21208T0/1-326 ---------- ---------- ---------- ---------- --TGSGE--- ENSTTRP00000003064/1-424 RPVPLAFLGV ARPSLTLCWD FPNVQPRVHV SREPGTTAPL PLPGAGSSPV 401 450 ENSP00000384432/1-302 ---------- ---------- --------- ENSBTAP00000019810/1-305 ---------- ---------- --------- bmy_21208T0/1-326 ---------- -LGAPLSLCP PFRTGATR- ENSTTRP00000003064/1-424 LLVSPTPRGR GLSSGSRLCS ALTVPEQRS