KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:09:22 2014 Check: 00 .. Name: ENSP00000270172/1-387 Len: 733 Check: 3663 Weight: 1.00 Name: ENSBTAP00000019812/1-422 Len: 733 Check: 5695 Weight: 1.00 Name: BACU004367/1-729 Len: 733 Check: 4811 Weight: 1.00 Name: ENSTTRP00000003065/1-386 Len: 733 Check: 6581 Weight: 1.00 Name: bmy_21209T0/1-391 Len: 733 Check: 7522 Weight: 1.00 // 1 50 ENSP00000270172/1-387 ---------- ---------- ---------- ---------- MAAIPALDPE ENSBTAP00000019812/1-422 SGRSPFPDSM AHSSLGTLNL ETMDGSDPDP ALPPDREQWP PPCEI----Q BACU004367/1-729 ----PFPGSM ALSSPGTLSL ETLDDSDPDP APLLDGEPWP PPCEIILDPE ENSTTRP00000003065/1-386 ---------- ---------- ---------- ---------- TATAAVLDRE bmy_21209T0/1-391 ---------- ---------- ---------- ---------- MATAAVLDPE 51 100 ENSP00000270172/1-387 AEPSMDVILV GSSELSSSVS PGTGRDLIAY EVKANQRNIE DICICCGSLQ ENSBTAP00000019812/1-422 PEHSLDIILV GSSELSSPPS PGPRRDFIAY EVKVNQRDIE DVCICCGSLQ BACU004367/1-729 AEHSMDVILV GSSERSSPPS PRLRRDLIAY EVKVNQRDIE DMCICCGSFQ ENSTTRP00000003065/1-386 AEHSTDII-P RSSEQSSPPS PRLRRDLIAY EVKVNQRDIE DMCICCGSFR bmy_21209T0/1-391 AEHSMDVILV GSSERSSPPS PRLRRDLIAY EVKVNQRDIE ---------- 101 150 ENSP00000270172/1-387 VHTQHPLFEG GICAPC---- ---------- ---------- -KDKFLDALF ENSBTAP00000019812/1-422 LHTQHPLFEG GMCAPC---- ---------- ---------- -KDKFLECLF BACU004367/1-729 VHTQHPLFEG GMCTPCKVSR EAWGGSVEAL EQRRQPGFAL TKDKFLECLF ENSTTRP00000003065/1-386 VHTQHPLCEG GMCTPC---- ---------- ---------- -KDKFLECLF bmy_21209T0/1-391 ---------- GMCTPCKVSR EAWGGSVEAL EQRRQPGFAL TKDKFLECLF 151 200 ENSP00000270172/1-387 LYDDDGYQSY CSICCSGETL LICGNPDCTR CYCFECVDSL VGPGTSGKVH ENSBTAP00000019812/1-422 LYDDDGYQSY CSICCAGETL LICENPDCTR CYCFECVDTL VGPGTSGKVH BACU004367/1-729 LYDEDGYQSY CSICCAGETL LICENPDCTR CYCFECVDSL VGPGASGKVQ ENSTTRP00000003065/1-386 LYDEDGYLSY CSICCAGETL LICESPDCTR CYCFECIDSL VGPGTSGKVQ bmy_21209T0/1-391 LYDEDGYQSY CSICCAGETL LICENPDCTR CYCFQCVDSL VGPGASGKVH 201 250 ENSP00000270172/1-387 AMSNWVCYLC LPSSRSGLLQ RRRKWRSQLK AFYDRESENP LEMFETVPVW ENSBTAP00000019812/1-422 AMSNWVCFLC LPFPRSGLLQ RRRKWRTWLK AFYDREAESP LVMYKTVPVW BACU004367/1-729 AMSNWVCFLC LPFPRSGLLQ RRKKWLGWLK AFCDRESDSP LEMYKTVPVW ENSTTRP00000003065/1-386 AMSNWVCFLC LPFPRSGLLQ RRKKWRGWLK AFCDREAESP LEMYKTVPVW bmy_21209T0/1-391 AMSNWVCFLC LPFPRSGLLQ RRKKWRGWLK AFCDRESESP LEMYKTVPVW 251 300 ENSP00000270172/1-387 RRQPVRVLSL FEDIKKELTS LGFLESGSDP GQLKHVVDVT DTVRKDVEEW ENSBTAP00000019812/1-422 KREPIRVLSL FGDIKKELTS LGFLEDGSKP GRLKHLDDVT NIVRRDIDEW BACU004367/1-729 KREPVRVLSL FGNIKKELMS LGFLEYGSEL GKLKHLDDVT NVVRRDVEGW ENSTTRP00000003065/1-386 KREPIRVLSL FGDIKKELMS LGFLEHGSEP GKLKHLDDVT NVVRRDVEAW bmy_21209T0/1-391 KREPVRVLSL FGNIKKELMS LGFLEYGSEL GKLKHLDDVT NVVRRDVEGW 301 350 ENSP00000270172/1-387 GPFDLVYGAT PPLGHTCDRP PSWYLFQFHR LLQYARPKPG SPRPFFWMFV ENSBTAP00000019812/1-422 GPFDLTYGST PTLGHTCDHP PGWYVYQFHR ILQYARPLPG SPQPFFWMFV BACU004367/1-729 GPFDLAYGST PPLGHACDHP PAWYLYQFHR ILQYARPRPG SPQPFFWMFV ENSTTRP00000003065/1-386 GPFDLAYGST PPRGHACSQP PAWYLFQFHR ILRYARPRPG SPQPFFWMFV bmy_21209T0/1-391 GPFDLAYGST PPLGHACDHP PAWYLYQFHR ILQYARPRPG SPQPFFWMFV 351 400 ENSP00000270172/1-387 DNLVLNKEDL DVASRFLEME PVTIPDVHGG SLQNAVRVWS NIPAIRSSR- ENSBTAP00000019812/1-422 DNLVLTEEDL DVATRFLETD PVTIQDVRGR TVQNAVHVWS NIPAVK-SR- BACU004367/1-729 DNLVLTKDDR IVATRFLEAD PVTIQDVYGS TIQNAVHVWS NIPAVKSPGL ENSTTRP00000003065/1-386 DNLVLTQDDR VVATRFLETE PVTIQDVRGC TIRNAVNVWS NVPAVKSSR- bmy_21209T0/1-391 DNLVLTKDDR IVATRFLEAD PVTIQDVHGS TIQNAVHVWS NIPAVK-SR- 401 450 ENSP00000270172/1-387 --------HW ALVSEEELSL LAQN------ ---------- ---------- ENSBTAP00000019812/1-422 --------HS ALVSQEELSL LAQD------ ---------- ---------- BACU004367/1-729 LLLLLCGLRA EIQEEEVRAM VGSDVWLSCI YPKGNSFDLN DLYVYWQISV ENSTTRP00000003065/1-386 --------HS ALDPQEELSL LARD------ ---------- ---------- bmy_21209T0/1-391 --------HS ALDSQEELSL LAQD------ ---------- ---------- 451 500 ENSP00000270172/1-387 ---------- ---------- -------KQS SK-------- ---------- ENSBTAP00000019812/1-422 ---------- ---------- -------RQR VK-------- ---------- BACU004367/1-729 PGKRNTNSVV TYYLSGNSSA GHGDNHYKGR ARLSLDGMKQ GNFSLHLHNV ENSTTRP00000003065/1-386 ---------- ---------- -------RQR AK-------- ---------- bmy_21209T0/1-391 ---------- ---------- -------RQR AK-------- ---------- 501 550 ENSP00000270172/1-387 ---------- ---------- ---------- -------LAA KWPT------ ENSBTAP00000019812/1-422 ---------- ---------- ---------- -------SPA QGPA------ BACU004367/1-729 TPQDEQKFNC LVFRKSLELE KILEVTVTLN VAANYSMPVV SGPSQDEEFI ENSTTRP00000003065/1-386 ---------- ---------- ---------- -------PPT QGPA------ bmy_21209T0/1-391 ---------- ---------- ---------- -------PPT QGPA------ 551 600 ENSP00000270172/1-387 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019812/1-422 ---------- ---------- ---------- ---------- ---------- BACU004367/1-729 FTCTSTNGYP RPNVYWINKT DNSLLDDTLQ NSTVSLNAQG LYNVVSVLRI ENSTTRP00000003065/1-386 ---------- ---------- ---------- ---------- ---------- bmy_21209T0/1-391 ---------- ---------- ---------- ---------- ---------- 601 650 ENSP00000270172/1-387 ---------K LVKNCFL--- ---------- ---------- ---------- ENSBTAP00000019812/1-422 ---------T LVKNCFL--- ---------- ---------- ---------- BACU004367/1-729 GRSPTVDVGC CIENVLLHQN LTSSQTETFT GTKDSITEDP VDDTQDAVNR ENSTTRP00000003065/1-386 ---------T LVKNCFL--- ---------- ---------- ---------- bmy_21209T0/1-391 ---------M LVKNCFL--- ---------- ---------- ---------- 651 700 ENSP00000270172/1-387 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019812/1-422 ---------- ---------- ---------- ---------- ---------- BACU004367/1-729 PILSVLAVLV VAVAMAVATG WLCRSRCPYR SYAGAQAAKP ELELTGQFAR ENSTTRP00000003065/1-386 ---------- ---------- ---------- ---------- ---------- bmy_21209T0/1-391 ---------- ---------- ---------- ---------- ---------- 701 750 ENSP00000270172/1-387 ----PLREYF KYFSTELTSS L--------- --- ENSBTAP00000019812/1-422 ----PLREYF KYFSTELTSS L--------- --- BACU004367/1-729 REGDPWRNCR STGSGELGTP LSLCPPFRTG ATR ENSTTRP00000003065/1-386 ----PLREYF KYFSTELTSS L--------- --- bmy_21209T0/1-391 ----PLREYF KYFSTELTSS L--------- ---