KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:09:24 2014 Check: 00 .. Name: ENSTTRP00000015313/1-1439 Len: 1446 Check: 1250 Weight: 1.00 Name: ENSP00000363557/1-1437 Len: 1446 Check: 4126 Weight: 1.00 Name: ENSBTAP00000019817/1-1442 Len: 1446 Check: 9096 Weight: 1.00 Name: bmy_04559T0/1-1080 Len: 1446 Check: 8831 Weight: 1.00 Name: BACU005778/1-1423 Len: 1446 Check: 5686 Weight: 1.00 // 1 50 ENSTTRP00000015313/1-1439 MTLPQSPGGV GEPRAPQAVA MHRLEHRHEE EQKSEQQHSL RMGSSARKRT ENSP00000363557/1-1437 MTLPHSLGGA GDPRPPQAME VHRLEHRQEE EQKEERQHSL RMGSSVRRRT ENSBTAP00000019817/1-1442 MTLPHSPGGV GEPRPPQAMQ VHRREHRREE EQKEERQHSL QMDSSMRKRT bmy_04559T0/1-1080 MTLPQSPGGM GEPRAPQAVA VHRLEHRREE EQKEARQHSL QMGSSTRRRT BACU005778/1-1423 ---------M GEPRAPEAVA VHRLEHRQEE EQKEGWPHSL QMGSSTRKWT 51 100 ENSTTRP00000015313/1-1439 FRS-SSEEEY RFSAADYALA AALALTASSE TSWEAQLRRQ TSTVQLEERG ENSP00000363557/1-1437 FRS--SEEEH EFSAADYALA AALALTASSE LSWEAQLRRQ TSAVELEERG ENSBTAP00000019817/1-1442 FRSRGSEEEY QFSAADYALA AALALTASSE TTWEAQLRRQ TSTVELEERG bmy_04559T0/1-1080 FRS--SEEEN QFSAADYALA AALALTASSE TSWEAQLRRQ TSTVELEERG BACU005778/1-1423 FRS--SEEED QFSAADYALA AALALTASSE TSWEAQLRRQ TSTVELEERG 101 150 ENSTTRP00000015313/1-1439 QKRVGFGNEW ERTEIAFLRT QWLLRQRRDR KALRWQTEKK VREAKELRDL ENSP00000363557/1-1437 QKRVGFGNDW ERTEIAFLQT HRLLRQRRDW KTLRRRTEEK VQEAKELREL ENSBTAP00000019817/1-1442 QKRVGFGNDW ERTEIAFLRT QWLLRQRRDR KALRRRTEEK VREAKELREL bmy_04559T0/1-1080 QKRVGFGNEW EKMEIAFLQT QWLLRQRRDR KALRWQTEKK VREAKELREL BACU005778/1-1423 QKRVGFGNEW EKMEIAFLQT QWLLRQRRDQ KALRWQTEKK VREAKELREL 151 200 ENSTTRP00000015313/1-1439 CSGRGPWFWI PLRSHAVWEH TTVLLTCTVQ ASPPPQVTWY KNDMRIDLRL ENSP00000363557/1-1437 CYGRGPWFWI PLRSHAVWEH TTVLLTCTVQ ASPPPQVTWY KNDTRIDPRL ENSBTAP00000019817/1-1442 CSGRGPWFWI PLRSHAVWEH TTVLLTCTVQ GSPPPQVTWY KNDVRIDPRL bmy_04559T0/1-1080 CSGRGPWFWI PLRSHAVWER TTVLLTCTVQ ASPPPQ---- ---------- BACU005778/1-1423 CSGRGPWFCI PLRSHAVWEH TTVLLTCTVQ ASPPPQVTWY KNDMRIDLRL 201 250 ENSTTRP00000015313/1-1439 FPAGKYRITN NYGLLTLEIR RCTIEDAGTY TVMVKNAYGQ ASSFAKVLVR ENSP00000363557/1-1437 FRAGKYRITN NYGLLSLEIR RCAIEDSATY TVRVKNAHGQ ASSFAKVLVR ENSBTAP00000019817/1-1442 FPAGKYRITN NYGLLTLEIR RCTIEDAATY TVKVKNAYGQ ASSFAKVLVR bmy_04559T0/1-1080 ---------- ---------- -----DAATY TVMVKNAYGQ ASSFAKVLVR BACU005778/1-1423 FPAGKYRITN NYGLLTLEIR RCTIEDAATY TVMVKNAYGQ ASSFAKVLVR 251 300 ENSTTRP00000015313/1-1439 TYLGKDAGFD SEIFKRLMFG SNVEFTSVLK PVFTREKEPF SLSCLFSEDV ENSP00000363557/1-1437 TYLGKDAGFD SEIFKRSTFG PSVEFTSVLK PVFAREKEPF SLSCLFSEDV ENSBTAP00000019817/1-1442 TYLGKDAGFD SEMFKRLMFG PSVDFTSVLK PVFAREKETF SLKCLFSEDV bmy_04559T0/1-1080 ---------- -----RLMFG PNVEFTSVLK PVFAREKESF SLSCLFSEDV BACU005778/1-1423 TYLGKDAGFD SEIFKRLMFG PNVEFTSMLK PVFAREKESF SLSCLFSEDV 301 350 ENSTTRP00000015313/1-1439 LDAEQNIQWF RDGRLLKSSS RRQILYADRQ ASLKVSCAYK EDEGLYTVQV ENSP00000363557/1-1437 LDAE-SIQWF RDGSLLRSSR RRKILYTDRQ ASLKVSCTYK EDEGLYMVRV ENSBTAP00000019817/1-1442 LDAEQNIQWF RDGRLLRSSG RRQILYADRQ AVLKVACAYK EDEGLYTVQV bmy_04559T0/1-1080 LDAKQNIQWF RDGRLLKSSS RRQILYADRQ ASLKVSCAYK EDE------- BACU005778/1-1423 LDAQQNIQWF RDGRLLKSSS RRQMLYADRQ ASLKVSCAYK EDEGLYTVQV 351 400 ENSTTRP00000015313/1-1439 PLPFGLREQS AYVFVRDAAA EKPGAPGSPL NVRCLNVNRD CLILTWTPPS ENSP00000363557/1-1437 PSPFGPREQS TYVLVRDAEA ENPGAPGSPL NVRCLDVNRD CLILTWAPPS ENSBTAP00000019817/1-1442 PSPFGLQEQS AYVFVRDAAA EKPGVPGSPL NVRCLNVNRD CLILTWTPPS bmy_04559T0/1-1080 ---------- ------DAAA EKPGAPGSPL NVRCLNLNRD CLTLTWTPPS BACU005778/1-1423 PSPSGLQEQR AYVFVRDAAA EKPGAPGSPL NVQCLNVNRD CLTLTWTPPS 401 450 ENSTTRP00000015313/1-1439 DTRGNPITSY SIELCQGESE QWVPCHQAPG GTCRCPIQGL VEGQSYRFRV ENSP00000363557/1-1437 DTRGNPITAY TIERCQGESG EWIACHEAPG GTCRCPIQGL VEGQSYRFRV ENSBTAP00000019817/1-1442 DTRGNPITGY SIELCQGESE EWVPCHQAPG GTCRCPIQGL IEGQSYRFRV bmy_04559T0/1-1080 DTRGNPITSY SIELCQGESE QWVLCHQTPG GTCRCPIQGL VEGQSYRFRV BACU005778/1-1423 DTRGNAITSY SIELCQGESE QWVLCHQTPG GTCRCPIQGL AEGQSYRFRV 451 500 ENSTTRP00000015313/1-1439 RAISKAGSSI PSKASEPVAM GDPEEAWKKT EIPFDTGKTI TVSTDDSEDF ENSP00000363557/1-1437 RAISRVGSSV PSKASELVVM GDHDAARRKT EIPFDLGNKI TISTDAFEDT ENSBTAP00000019817/1-1442 RAINRAGSSV PSKASEPVVM GDRDEAQRKT EIPFDMGKSI TVSTDDFDDF bmy_04559T0/1-1080 RAISRAGSSI PSKASEPVAM GDPEEARRKT EIPFDMGKTI TVSTDDSE-- BACU005778/1-1423 RAISRAGGSI PSKASEPVAM GDPEEARRKT EIPFDMGKTI TVSTDDSEDF 501 550 ENSTTRP00000015313/1-1439 VTIPSPPTNV HASEIHEAYV VLGWEKPRPR GKAPLTYFLE KSVIGSGTWE ENSP00000363557/1-1437 VTIPSPPTNV HASEIREAYV VLAWEEPSPR DRAPLTYSLE KSVIGSGTWE ENSBTAP00000019817/1-1442 VTIPSPPTNV HGSEIREAYV VLAWEEPRPR GKAPLTYFLE KSVIGSGTWE bmy_04559T0/1-1080 ---------- ---------- ---------- ---------- ----GSGTWE BACU005778/1-1423 VTIPSPPTNV HASEIREAYV VLGWEEPRPR GKAPLTYFLE KSVIGSGTWE 551 600 ENSTTRP00000015313/1-1439 AINSETPVKS PRFALLDLEK GKXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000363557/1-1437 AISSESPVRS PRFAVLDLEK KKSYVFRVRA MNQYGLSDPS EPSEPIALRG ENSBTAP00000019817/1-1442 AVNSEAPVKS PRFALLDLEK GKSYVFRVRA INQYGMSDPS EPSEPIALRG bmy_04559T0/1-1080 AINSETPVKS PRFALLDLEK GKTYVFRVRA INQHGMSDPS EPSEPIALRG BACU005778/1-1423 AINSETPVKS PRFALLDLEK GKSYVFRVRA INQHGMSDPS EPSEPIALRG 601 650 ENSTTRP00000015313/1-1439 XXXTLPPPTQ VQAFRDTQTS VSLTWDPVKD SPELLGYYIY SREAGSSEWK ENSP00000363557/1-1437 PPATLPPPAQ VQAFRDTQTS VSLTWDPVKD -PELLGYYIY SRKVGTSEWQ ENSBTAP00000019817/1-1442 KPATLPPPTQ VQAFRDTQTS VSLTWDPVKD SPELLGYYIY SREAGSSEWR bmy_04559T0/1-1080 KPATLPPPTQ VQAFRDTQTS VSLNWDPVKD SPELLGYYIY SREAGSSEWK BACU005778/1-1423 KPATLPPPTQ VQAFRDTQTS VSLNWDPVKD SPELLGYYIY SREAGSSEWK 651 700 ENSTTRP00000015313/1-1439 T-VNNKPIQG SRFTVPGLRT GKEYEFCIRS VSEAGVGESS AATEPVKVKQ ENSP00000363557/1-1437 T-VNNKPIQG TRFTVPGLRT GKEYEFCVRS VSEAGVGESS AATEPIRVKQ ENSBTAP00000019817/1-1442 T-VNNKPIQG SRFTIPGLRT GKEYEFCIRS VSEAGVGESS AVTEPIRVKQ bmy_04559T0/1-1080 TAVHFSP--- -RFTVPGLRT GKEYEFCIRS VSEAGVGESS AATEPIKVKQ BACU005778/1-1423 T-VNNKPIQG NRFTVPGLRT GQEYEFCIRS VSEAGVGESS AATEPIKVKQ 701 750 ENSTTRP00000015313/1-1439 ALAAPSAPYD FALLNCGENY MVIGWKPPKR RGGGKILGYF LDQHDSEQLD ENSP00000363557/1-1437 ALATPSAPYG FALLNCGKNE MVIGWKPPKR RGGGKILGYF LDQHDSEELD ENSBTAP00000019817/1-1442 ALATPSAPYD FALLNCGKNE MVIGWKPPKR RGGGKILGYF LDQHDSEELD bmy_04559T0/1-1080 ALAIPSAPYD FALLNCGEND MVIGWKPPKR RGGGKILGYF LDQHDSEELN BACU005778/1-1423 ALAIPSAPYD FALLNCGEND MVIGWKPPKR RGGGKILGYF LDQHDSEELN 751 800 ENSTTRP00000015313/1-1439 WHSVNQQPIP TQMCKXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000363557/1-1437 WHAVNQQPIP TRVCKVSDLH EGHFYEFRAR AANWAGVGEL SAPSSLFECK ENSBTAP00000019817/1-1442 WHEVNQQPVP TQICKVSNLH EGHFYEFRAR AVNWAGVGEL SAPSKLFECK bmy_04559T0/1-1080 WRSVNQQPIP TQICKVSDLH EGHFYEFRAR AVNWAGVGEL SAPSSLFECK BACU005778/1-1423 WRSVNQQPIP TQICKVSDLH EGHFYGFRAR AVNWAGVGEL SAPSSLFECK 801 850 ENSTTRP00000015313/1-1439 XXXXXXXXPP YGVRAFEVRA TSLMLTWEPP LYQGAGPVTG YCLSVQEEGS ENSP00000363557/1-1437 EWTMPQPGPP YDVRASEVRA TSLVLQWEPP LYMGAGPVTG YHVSFQEEGS ENSBTAP00000019817/1-1442 EWTMPQPGPP YDLRVSEVRA TSLMLAWEPP LYRGAGPVTG YRISVQEEGS bmy_04559T0/1-1080 KWTMPQPGPP YGVRVFEVRA TSLMLTWEPP LYQGAGPVTG YCISVQEEGS BACU005778/1-1423 KWTMPQPGPP YGVRVFEVRA TSLMLMWEPP LYQGAGPVTG YCISVQEEGS 851 900 ENSTTRP00000015313/1-1439 EQWKPVTPGP ISGTHLRVSD LQPGKTYVFH VQAVNSVGPG QPSMPTDPIL ENSP00000363557/1-1437 EQWKPVTPGP ISGTHLRVSD LQPGKSYVFQ VQAMNSAGLG QPSMPTDPVL ENSBTAP00000019817/1-1442 EQWKPVTPDL ISDTHLRISD LQPGKTYMFQ VQAVNSAGPG QPSMPTDPVL bmy_04559T0/1-1080 EQWKPVTPDP ISDTHLRISD LQPGKTYVFH VQAVNSAGPG QPSMPTDPVL BACU005778/1-1423 EQWKPVTPDP ISDTHLRISD LQPGKTYVFH VQAVNSAGPG QPSMPTDPVL 901 950 ENSTTRP00000015313/1-1439 LEDKPDAREI EVGVDDEGFI YMAFEAPEAP DSSEFQWSKD YKGPPDPQRV ENSP00000363557/1-1437 LEDKPGAHEI EVGVDEEGFI YLAFEAPEAP DSSEFQWSKD YKGPLDPQRV ENSBTAP00000019817/1-1442 LEDKPDAREI EVGVDDEGFI YMAFEAPEAP DSAEFQWSKD YKGPPDPERV bmy_04559T0/1-1080 LEDKP----- ---------- -----APEAP DSSEFQWSKD YKGPPDPQRV BACU005778/1-1423 LEDKPDAREI EVGVDDEGFI YMAFEAPEAP DSSEFQWSKD YKGPPDPQRV 951 1000 ENSTTRP00000015313/1-1439 KVEEEVNKSK IILKEPGLED LGTYSVVVTD ADEDISASHT LTEEELNRLK ENSP00000363557/1-1437 KIEDKVNKSK VILKEPGLED LGTYSVIVTD ADEDISASHT LTEEELEKLK ENSBTAP00000019817/1-1442 KVEEEANKSK IILKDPGLED LGTYSVVVTD ADEDISASHT LTEDELNKLK bmy_04559T0/1-1080 KVEEEVNKSK IILKEPGLED LGTYSVVVTD ADEEISASHT LTEEGGQ--- BACU005778/1-1423 KVEEEVNKSK IILKEPGLKD LGTYSVVVTD ADEEISASHT LTEEELNKLK 1001 1050 ENSTTRP00000015313/1-1439 KLSHEIRNPX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000363557/1-1437 KLSHEIRNPV IKLISGWNID ILERGEVRLW LEVEKLSPAA ELHLIFNNKE ENSBTAP00000019817/1-1442 KLSHEIRNPV IKLISGWNVE ILEQGEVRLW LEVEKLSPAA ELHLIFNEKE bmy_04559T0/1-1080 ---HQERNPL --------PV VLPEERVPRW ---------- ---------- BACU005778/1-1423 KLSHEIRNPV IKLISGWNVD ILEQGEVRLW LEVEKLSPAA ELHLIFNEQE 1051 1100 ENSTTRP00000015313/1-1439 XXXXXNRKIN FVREKGLVEV IIQNLTEDDK GSYTAQLQDG KAKNQITLAL ENSP00000363557/1-1437 IFSSPNRKIN FDREKGLVEV IIQNLSEEDK GSYTAQLQDG KAKNQITLTL ENSBTAP00000019817/1-1442 IFSSPNRKIN FVREKGLVEV IIQHLTEDDK GSYTAQLQDG KAKNQITLAL bmy_04559T0/1-1080 ---------- ---------- ---------- ---------- ---------- BACU005778/1-1423 IFSSPNRKIN FVREKGLVEV IIQNLTEDDK GSYTAQLQDG KAKNQITLAL 1101 1150 ENSTTRP00000015313/1-1439 VDDEFDKLLR EADAKRRDWK RKQVIGPYFE EPLQWKVTED CQVLLMCKVT ENSP00000363557/1-1437 VDDDFDKLLR KADAKRRDWK RKQ--GPYFE RPLQWKVTED CQVQLTCKVT ENSBTAP00000019817/1-1442 VDDEFDKLLR AADAKRRDWK RKQ--GPYFV EPLQWKVTDD CQVLLTCKVT bmy_04559T0/1-1080 ---------- --SVRPADWS RA-------- ---------- ---------- BACU005778/1-1423 VDDEFDKLLR EAGAKRRDWK RKQ--GPHFE EPLQWKVTED CQ------VA 1151 1200 ENSTTRP00000015313/1-1439 NTKKETRFQW FFQKKEFPDG QYDPQTGAGL LCMEE--KXX KGIYRAEVSD ENSP00000363557/1-1437 NTKKETRFQW FFQRAEMPDG QYDPETGTGL LCIEELSKKD KGIYRAMVSD ENSBTAP00000019817/1-1442 NTKKETRFQW FFQKREFPAG QYDPQTGAGL LCIEELSKED QGVYRAQVSD bmy_04559T0/1-1080 ---------- ---------- ---------- ---------- ---------- BACU005778/1-1423 NTKKETRFQW FFQKKEFPDG QYDPQTGAGL LCIEELSKED KGIYRAEVSD 1201 1250 ENSTTRP00000015313/1-1439 ERGEDDTILD LTGEALDAIF TELGRIGALS ATPLKIQGTE EGI--RLFSR ENSP00000363557/1-1437 DRGEDDTILD LTGDALDAIF TELGRIGALS ATPLKIQGTE EGI--RIFSK ENSBTAP00000019817/1-1442 DRGEDDTILD LRDEALDAIF TELGRIGALS ATPLKRSGVR DSARGRVANR bmy_04559T0/1-1080 ---------S LHRRALDAIF TELGRIGALS ATPLKIQGTE EGI--RLFSR BACU005778/1-1423 ERGEDDTILD LTGEALDAVF TELGRIGALS ATPLKIQGTE EGI--RLFSR 1251 1300 ENSTTRP00000015313/1-1439 VKYYNASYMK TTWFHKEKRL ESGDRVRAGX XXXXXXXXXX XXXXXXXXXX ENSP00000363557/1-1437 VKYYNVEYMK TTWFHKDKRL ESGDRIRTGT TLDEIWLHIL DPKDSDKGKY ENSBTAP00000019817/1-1442 DSARAQALMN DEWMSGEKRL ESGDRVRAGT TLDEIWLHIL DPKDSDKGKY bmy_04559T0/1-1080 VKYYNVNYMK TTWFHKEKRL ESGDRVRAGT TLDEIWLHIL DPKDSDKGRY BACU005778/1-1423 VKYYNVNYMK TSWFHKEKRL ESGDRVRAGT TLDEIWLHIL DPKDSDKGRY 1301 1350 ENSTTRP00000015313/1-1439 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXALAIIEK NRAKVVRGLP ENSP00000363557/1-1437 TLEIAAGKEV RQLSTDLSGQ AFEDAMAEHQ RLKTLAIIEK NRAKVVRGLP ENSBTAP00000019817/1-1442 ILEITAGKEV RQLSADLSGQ AFEDAMAEHQ RLKALAIIEK NRAKVVRGLP bmy_04559T0/1-1080 TLEIAAGKEV RQLSADLSGQ ---EPWPSSR R--------- ---------- BACU005778/1-1423 TLEIAAGKEA RQLSADLSGQ AFEDALAEHQ RLKALAIIEK NRAKVVRGLP 1351 1400 ENSTTRP00000015313/1-1439 DVATIMEDKT LCLTCVISGD PIPEVSWLKN DQPVTFLDRY HMEVKGLEVT ENSP00000363557/1-1437 DVATIMEDKT LCLTCIVSGD PTPEISWLKN DQPVTFLDRY RMEVRGTEVT ENSBTAP00000019817/1-1442 DVATIMEDKT LCLTCVVSGD PAPEIYWLKN DQPVTFLDRY HMDVKGTEVT bmy_04559T0/1-1080 ---------T LCLTCVISGD PFPEISWLKN DQPVTFLDRY HMEVKGSEVT BACU005778/1-1423 DVATIMEDKT LCLTCVISGD PFPEISWLKN DQPITFLDRY HMEVRGSEVT 1401 1450 ENSTTRP00000015313/1-1439 ITIERVNSED SGRYGVFVKN KYGSEKGQVT ISVFKHGEED KVLKM- ENSP00000363557/1-1437 ITIEKVNSED SGRYGVFVKN KYGSETGQVT ISVFKHGDEP KELKSM ENSBTAP00000019817/1-1442 ITIERVNSED SGRYGVFVKN KYGSETGQVT ISVFKHGEEE KVLKM- bmy_04559T0/1-1080 ITIERVNSED SGRYGVFVKN KYGSETGQVT ISVFKHGEEG KVQKV- BACU005778/1-1423 ITIERVNSED SGRYGVFVKN KYGSETGQVT ISVFKHGEEG KVLKV-