KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:09:25 2014 Check: 00 .. Name: ENSBTAP00000019822/1-728 Len: 792 Check: 7693 Weight: 1.00 Name: ENSP00000321573/1-775 Len: 792 Check: 562 Weight: 1.00 Name: bmy_12366T0/1-719 Len: 792 Check: 4658 Weight: 1.00 Name: BACU000043/1-536 Len: 792 Check: 8760 Weight: 1.00 Name: ENSTTRP00000004652/1-748 Len: 792 Check: 8671 Weight: 1.00 // 1 50 ENSBTAP00000019822/1-728 ---------- ---------- ---------- ---------- -------VFL ENSP00000321573/1-775 MASRAVVRAR RCPQCPQVRA AAAAPAWAAL PLSRSLPPCS NSSSFSMPLF bmy_12366T0/1-719 ---------- ---------- ---------- ---------- ---------- BACU000043/1-536 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004652/1-748 ---------- ---------- ---------- -----LLPRS NPSSFPMPLF 51 100 ENSBTAP00000019822/1-728 EIIQLLTEIL EKACGICKGD GCGHTVLGPE SGTLTSINYP HTYPNSTVCE ENSP00000321573/1-775 LLLLLVLLLL LEDAGAQQGD GCGHTVLGPE SGTLTSINYP QTYPNSTVCE bmy_12366T0/1-719 ---------- ----MIHSRQ GSKDTEIHSQ RVSEKSVFVL STFMSLVIKS BACU000043/1-536 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004652/1-748 LLLLLILLLL LEDAGAQQGD GCGHTVLGPE SGTLTSINYP QTYPNSTVCE 101 150 ENSBTAP00000019822/1-728 WEIRVKTGER VRIKFGDFDI EDSDSCHFNY LR--IYNGIG VGRTEIGKY- ENSP00000321573/1-775 WEIRVKMGER VRIKFGDFDI EDSDSCHFNY LR--IYNGIG VSRTEIGKY- bmy_12366T0/1-719 LNGK----EQ LVLISPEFVK VNQSNYVSNS LKGLVYRNLG VERIAHGRNQ BACU000043/1-536 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004652/1-748 WEIRVKMGER VRIKFGDFDI EDSDSCHFNY LR--IYNGIG VSRTEIGKY- 151 200 ENSBTAP00000019822/1-728 CGLGLQMNHS IESKSNEVTV LFMSGIHVSG RGFLASYSVI EKQDLITCLD ENSP00000321573/1-775 CGLGLQMNHS IESKGNEITL LFMSGIHVSG RGFLASYSVI DKQDLITCLD bmy_12366T0/1-719 CQVPI----- VETRNYSQGY TIISTQEFSR KMSLVPHPLA LEQNLITCLD BACU000043/1-536 ------MNHS IESKSNEITV LFMSGIHVSG RGFLASYSVI DKQ------- ENSTTRP00000004652/1-748 CGLGLQMNHS IESKSNEITV LFMSGIHVSG RGFLASYSVI DKQDLITCLD 201 250 ENSBTAP00000019822/1-728 TASKFLEPEF SKYCPAGCLL PFAEISGAIP HGYRDSSPLC MAGVHAGVVS ENSP00000321573/1-775 TASNFLEPEF SKYCPAGCLL PFAEISGTIP HGYRDSSPLC MAGVHAGVVS bmy_12366T0/1-719 TASSFLEPEF SKYCPAGCLL PFAEISGTIP HGYRDSSPLC MAGVHAGVVS BACU000043/1-536 ---------- ------GC-- ---------- ---------- ---------- ENSTTRP00000004652/1-748 TASSFLEPEF SKYCPAGCLL PFAEISGTIP HGYRDXXXXX XXXXXXXXXX 251 300 ENSBTAP00000019822/1-728 NTLGGQISVV ISKGIPYYES SLANNVTSVV GHLSTSLFTF KTSGCYGTLG ENSP00000321573/1-775 NTLGGQISVV ISKGIPYYES SLANNVTSVV GHLSTSLFTF KTSGCYGTLG bmy_12366T0/1-719 NILGGRISVV ISKGIPYYES SLANNVTSVV GHLSTSLFTF KTSGCYGTLG BACU000043/1-536 ---------- ---------- ---------- ---------- -----YGTLG ENSTTRP00000004652/1-748 XXFGCRISVV ISKGI-YYES SLANNVTSVV GHLSTSLFTF KTS-C--TLG 301 350 ENSBTAP00000019822/1-728 MESGVIADAQ ITASSVLEWT DHTGQENSWK PEKARLKKPG PPWAAFATDE ENSP00000321573/1-775 MESGVIADPQ ITASSVLEWT DHTGQENSWK PKKARLKKPG PPWAAFATDE bmy_12366T0/1-719 MESGVIADAQ ITASSVLEWT DHTGQENSWK PEKARLKKPG PPWAAFATDE BACU000043/1-536 MESGVIADAQ ITASSVLEWT DHTGQENSWK PEKARLKKPG PPWAAFATDE ENSTTRP00000004652/1-748 M--SVIADAQ ITASSVLEWT DHTGQENSWK PEKARLKKPG PPWAAFATDE 351 400 ENSBTAP00000019822/1-728 YQWLQVDLNK EKKITGIVTT GSTMVEHNYY VSAYKILYSA DGQRWTVYRE ENSP00000321573/1-775 YQWLQIDLNK EKKITGIITT GSTMVEHNYY VSAYRILYSD DGQKWTVYRE bmy_12366T0/1-719 YQWLQIDLNK EKKITGIVTT GSTMVEHNYY VSAYRVLYSD DGQRWTVYRE BACU000043/1-536 YQWLQIDLNK EKKITGIVTT GSTMVEHNYY VSAYRVLYSD DGQRWTVYRE ENSTTRP00000004652/1-748 YQWLQIDLNK EKKITGIVTT GSTMVEHNYY VSAYRILYSD DGQRWTVYRE 401 450 ENSBTAP00000019822/1-728 PGVDQDKIFQ GNKDYHQDVR NNFLPPIIAR FIRVNPTQWQ QKIAMKMELL ENSP00000321573/1-775 PGVEQDKIFQ GNKDYHQDVR NNFLPPIIAR FIRVNPTQWQ QKIAMKMELL bmy_12366T0/1-719 PGVEQDKIFQ GNKDYHQDVR NNFLPPIIAR FIRVNPTQWQ QKIAMKMELL BACU000043/1-536 PGVEQDKIFQ GNKDYHQDVR NNFLPPIIAR FIRVNPTQWQ QKIAMKMELL ENSTTRP00000004652/1-748 PGVEQDKIFQ GNKDYHQDVR NNFLPPIIAR FIRVNPTQWQ QKIAMKVELL 451 500 ENSBTAP00000019822/1-728 GCQFIPKGRP PKLTQPPPPR SSNDLRNTTT PPKIAKGRAP KFTQPLQPRS ENSP00000321573/1-775 GCQFIPKGRP PKLTQPPPPR NSNDLKNTTA PPKIAKGRAP KFTQPLQPRS bmy_12366T0/1-719 GCQFIPKGRP PKLTQPPPPR SSSDLKNTTA PPKIAKGRAP KFTQPLQPRS BACU000043/1-536 GCQFIPKGRP PKLTQPPPPR SSSDLKNTTA PTKIAKGRAP KFTQPLQPRS ENSTTRP00000004652/1-748 GCQFIPKGRP PKLTQPPPPR SSSDLKNTTA PPKIAKGRAP KFTQPLQPRS 501 550 ENSBTAP00000019822/1-728 SNEFPTQTEQ TTAAPEIKNT TVTPSVTKDV ALAAVLVPVL VMVLTTLILI ENSP00000321573/1-775 SNEFPAQTEQ TTASPDIRNT TVTPNVTKDV ALAAVLVPVL VMVLTTLILI bmy_12366T0/1-719 SNEFPAHTEQ TTATPEIKNT TITPNVTKDV ALAAVLVPVL VMVLTTLILI BACU000043/1-536 SNEFPAHTEQ TTATPEIKNT TITPNVTKDV ALAAVLVPVL VMVLTTLILI ENSTTRP00000004652/1-748 SNEFPAHTEQ TTATPEIKNT TITPNVTKDV ALAAVLVPVL VMVLTTLILI 551 600 ENSBTAP00000019822/1-728 LVCAWHWRNR KKKTKGTYDL PYWDRA---- ---------- GWWKGMKQFL ENSP00000321573/1-775 LVCAWHWRNR KKKTEGTYDL PYWDRA---- ---------- GWWKGMKQFL bmy_12366T0/1-719 LVCAWHWRNR KKKAEGTYDL PYWDRAAFSV MVSFAYDHNE GWWKGMKQFL BACU000043/1-536 LVCAWHWRNR KKKAEGTYDL PYWDRAAFCV MVSFAYDHNE GWWKGMKQFL ENSTTRP00000004652/1-748 LVCAWHWRNR KKKAEGTYDL PYWDRAAFYV MVSFTYDHNE GWWKGMKQFL 601 650 ENSBTAP00000019822/1-728 PAKSVEHEET PVRYSSSEVN HLSPREVPTM LQADSAEYAQ PLVGGIVGPL ENSP00000321573/1-775 PAKAVDHEET PVRYSSSEVN HLSPREVTTV LQADSAEYAQ PLVGGIVGTL bmy_12366T0/1-719 PAKSVEHEET PVRYSSSEVN HLSPREVTTV LQADSAEYAQ PLVGGIVGTL BACU000043/1-536 PAKSVEHEET PVRYSSSEVN HLSPREVTTA LQADSAEYAQ PLVGGIVGTL ENSTTRP00000004652/1-748 PAKSVEHEET PVRYSSSEVN HLSPREVTTV LQADSAEYAQ PLVGGIVGTL 651 700 ENSBTAP00000019822/1-728 HQRSTFKPEE GKEAGYADLD PYSSPMQEVY HAYAEPLPVT GPEYATPIVM ENSP00000321573/1-775 HQRSTFKPEE GKEAGYADLD PYNSPGQEVY HAYAEPLPIT GPEYATPIIM bmy_12366T0/1-719 HQRSTFKPEE GKEAGYADLD PYSSPVQEVY HAYAEPLPVT GPEYATPIVM BACU000043/1-536 HQRSTFKPEE GKEAGYADLD PYSSPVQEVY HAYAEPLPVT GPEYATPIVM ENSTTRP00000004652/1-748 HQRSTFKPEE GKEAGYADLD PYSSPVQEVY HAYAEPLPVT GPEYATPIVV 701 750 ENSBTAP00000019822/1-728 DMSGHPSAAA GLPSTSTFKA AGNQPPPSVG TYNTLLSRTD SCSSAQAQYD ENSP00000321573/1-775 DMSGHPTTSV GQPSTSTFKA TGNQPPPLVG TYNTLLSRTD SCSSAQAQYD bmy_12366T0/1-719 DMSGHLTASV GLPSASTFKA AGNQPPPLVG TYSTRLSRTD SCSSARAQYD BACU000043/1-536 DMSGHPTASV GLPSASTFKA AGNQPPPLVG TYSTLLSRTD SCSSARAQYD ENSTTRP00000004652/1-748 DMSGHPTASV GLPSASTFKA AGNQPPPLVG TYNTLLSRTD SCSSAQAQYD 751 800 ENSBTAP00000019822/1-728 TPKGGKPGPS APDELVYQVP QSTQEVSEAG REGECDVFKE VL ENSP00000321573/1-775 TPKAGKPGLP APDELVYQVP QSTQEVSGAG RDGECDVFKE IL bmy_12366T0/1-719 TPKGGKPAPS APDELVYQVP QSAQGLSGAG RDGECGVFKE IL BACU000043/1-536 TPKGGKPTPS APDELVYQVP QSAQGLSGAG RDGGCGVFKD IL ENSTTRP00000004652/1-748 TPKGGKPAPS APDELVYQVP QSAQGASGAG RAGECGVSKE TL