KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:09:26 2014 Check: 00 .. Name: ENSBTAP00000019834/1-924 Len: 924 Check: 638 Weight: 1.00 Name: ENSTTRP00000011561/1-923 Len: 924 Check: 1426 Weight: 1.00 Name: bmy_08390T0/1-924 Len: 924 Check: 5948 Weight: 1.00 Name: BACU002871/1-256 Len: 924 Check: 5533 Weight: 1.00 // 1 50 ENSBTAP00000019834/1-924 MDSIGSLGLQ QGEGAPSCPQ EGLPCPSNSS EMVQECLQQF KVTGAQLRQI ENSTTRP00000011561/1-923 MDFIGSLGLQ QREGVPSCPQ EGLPCPSNSS ELVQECLQQF KVTGAQLRQI bmy_08390T0/1-924 MDSIGSLGLQ QREEAPSCPQ EGLPCPSNSS ELVQECLQQF KVTGAQLRQI BACU002871/1-256 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000019834/1-924 QTSLLGSMEQ ALRGQVGPAP AVRMLPTYVG STPHGTEKGD FVVLELGATG ENSTTRP00000011561/1-923 QISLLDSMEQ ALKGQASPAS AVRMLPTYVG STPHGTEQGD FVVLELGATG bmy_08390T0/1-924 QTSLLDSMEQ ALKGQASPAP AVRMLPTYVG STPHGTEQGD FVVLELGATG BACU002871/1-256 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000019834/1-924 ASLRVLWVTL TGIEGHKVEP RSQEFVIPQE VMLGPGQQLF DFAARCLSEF ENSTTRP00000011561/1-923 ASLRVLWVTL MGIEGHKMEP RSQEFVIPQE VMLGPGQQLF DFAARCLSEF bmy_08390T0/1-924 ASLRVLWVTL MGIEGHKMEP RSQEFVIPQE VMLGPGQQLF DFAARCLSEF BACU002871/1-256 ---------- ---------- ---------- ---------- ---------- 151 200 ENSBTAP00000019834/1-924 LDVLPVDNQG LQLGFSFSFP CHQTGLDKST LISWTKGFKC SDVEGQDVVQ ENSTTRP00000011561/1-923 LDALPVGNQG LQLGFSFSFP CHQTGLDKST LISWTKGFRC SGVEGQDVVQ bmy_08390T0/1-924 LDALPVGNQG LQLGFSFSFP CHQTGLDKST LISWTKGFRC SGVEGQDVVQ BACU002871/1-256 ---------- ---------- ---------- ---------- ---------- 201 250 ENSBTAP00000019834/1-924 LLRDAIQRQG AYSIDVVAVV NDTVGTMMGC EPGVGPCEVG LVVDTGTNAC ENSTTRP00000011561/1-923 LLRDAIQRQG TYSIDVVAVV NDTVGTMMGC EPGVGPCEVG LVVDTGTNAC bmy_08390T0/1-924 LLRDAIQRQG TYSIDVVAVV NDTVGTMMGC EPGVGPCEVG LVVDTGTNAC BACU002871/1-256 ---------- ---------- ---------- ---------- ---------- 251 300 ENSBTAP00000019834/1-924 YMEEARHVAV LDEDRGRVCI SIEWGSFSDE GALGPVQTIF DHTLDHESLN ENSTTRP00000011561/1-923 YMEEARHVAV LDEDRGRVCI SVEWGSFSDD GALGPVLTIF DRTLDHESLN bmy_08390T0/1-924 YMEEARHVAV LDEDRGRVCI NVEWGSFSDD GALGPVLTIF DRTLDHESLN BACU002871/1-256 ---------- ---------- ---------- ---------- ---------- 301 350 ENSBTAP00000019834/1-924 PGAQRFEKMI GGLYLGELVR LVLVHLAQRG VLFGGHTSPV LRSQGSILLE ENSTTRP00000011561/1-923 LGAQRFEKMI GGLYLGELVR LVLAHLAQCG VLFGGYTSPA LLRQGGILLE bmy_08390T0/1-924 LGAQRFEKMI GGLYLGELVR LVLAHLARCG VLFGGYTSPA LLRQGSILLE BACU002871/1-256 ---------- ---------- ---------- ---------- ---------- 351 400 ENSBTAP00000019834/1-924 HVAEMEDPSA GAARVHAVLQ DLGLNPKASD AEWVQCVCMA VCTRAAQLCA ENSTTRP00000011561/1-923 HVAEIEDPSA GAARVHAILQ DLGLNPSASD AEFVQHVCAA VCTRAAQLCA bmy_08390T0/1-924 HVAEMEDPSA GAARVHAILQ DLGLNPRASD AEFVQHICAA VCTRAAQLCA BACU002871/1-256 ---------- ---------- ---------- ---------- ---------- 401 450 ENSBTAP00000019834/1-924 AALAAVLSRL QHSREQQALQ IAVATGGRVF ERHPRFLSVL RETVMLLAPN ENSTTRP00000011561/1-923 AALAAVLSRL QHSREQQTLQ IAVATGGRVF ERHPXXXXXX XXXXXXXXXX bmy_08390T0/1-924 AALAAVLSRL QHSREQQTLQ IAVATGGRVF ERHPRFLSIL QETVMLLAPE BACU002871/1-256 ---------- ---------- ---------- ---------- ---------- 451 500 ENSBTAP00000019834/1-924 CDVSFIPSVD GGGRGVAMVT AVAARLAAHR RLLEETLAPF RLTREQLAEV ENSTTRP00000011561/1-923 XXXXXXXXXX -XXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_08390T0/1-924 CDVSFIPSVD GGGQGVAMVT AVAARLAAHR CLLEETLAPF RLTREQLAAV BACU002871/1-256 ---------- ---------- ---------- ---------- ---------- 501 550 ENSBTAP00000019834/1-924 QAQMREAMAK GLQGEASSLR MLPTYVRATP DGSERGDFLA LDLGGTNFRV ENSTTRP00000011561/1-923 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_08390T0/1-924 QAQMREAMAK GLQGEASSLR MLPTYVRATP DGSERGDFLA LDLGGTNFRV BACU002871/1-256 ---------- ---------- ---------- ---------- ---------- 551 600 ENSBTAP00000019834/1-924 LLVRVTTGGV QISSQIYSIP ECVAQGSGQQ LFDHIVDCIV DFQQKQGLSG ENSTTRP00000011561/1-923 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_08390T0/1-924 LLVRVATGGV QITSQVYSIP ECVAQGSGQQ LFDHIVDCIV DFQQKQGLSG BACU002871/1-256 ---------- ---------- ---------- ---------- ---------- 601 650 ENSBTAP00000019834/1-924 QSLPLGFTFS FPCRQMGLDQ GILLNWTKGF NASDCEGQDV VCLLREAIRR ENSTTRP00000011561/1-923 XXXXXXXXXX XXXXXXXXXX GILLNWTKGF NASDCEGQDV VCLLREAIRR bmy_08390T0/1-924 QSLPLGFTFS FPCRQVGLDQ GILLNWTKGF NASDCEGQDV VCLLREAIXR BACU002871/1-256 ---------- ---------- ---------- ---------- ---------- 651 700 ENSBTAP00000019834/1-924 RQAVELNVVA IVNDTVGTMM SCGYEDPHCE VGLIVGTGTN VCYMEELRNV ENSTTRP00000011561/1-923 RQAVELNVVA IVNDTVGTMM SCGYEDPHCE VGLIVGTGTN ACYMEELRNV bmy_08390T0/1-924 RQAVELNVVA IVNDTVGTMM SCGYEDPHCE VGLIVGTGTN ACYMEELRNV BACU002871/1-256 ---------- --------MM SCGYEDPHCE VGLIVGTGTN ACYMEELQNV 701 750 ENSBTAP00000019834/1-924 ASVDGDSGQM CINTEWGAFG DDGSLSMLST RFDASVDQAS INPGKQRFEK ENSTTRP00000011561/1-923 ASVAGDSGHM CINMEWGAFG DDGSLSMLST RFDASVDQAS INPGKQRFEK bmy_08390T0/1-924 ASVAGDSGHM CINMEWGAFG DDGSLSMLST RFDASVDQAS INPGKQRFEK BACU002871/1-256 ASVAGDSGHM CINMEWGAFG DDGSLSMLST CFDASVDQAS INPGKQRFEK 751 800 ENSBTAP00000019834/1-924 MISGMYLGEI VRHILLHLTS LGVLFRGQQT QRLQTRDIFK TKFLSEIESD ENSTTRP00000011561/1-923 MISGMYLGEI VRHTLLHLTS LGVLFRGQQT QRLQTRDIFK TKFLSEIESD bmy_08390T0/1-924 MISGMYLGEI VRHTLLHLTS LGVLFRGQQT QRLQTRDIFK TKFLSEIESD BACU002871/1-256 MISGMYLGEI VRHTLLHLTS LGVLFRGQQT QGLQTRDIFK TKFLSEIESD 801 850 ENSBTAP00000019834/1-924 SLALRQVRAI LEDLGLPLTS DDALMVLEVC QAVSQRAAQL CGAGVAAVVE ENSTTRP00000011561/1-923 SLALRQVRAI LEDLGLSLTS DDALMVLEVC QAVSQRAAQL CGAGVAAVVE bmy_08390T0/1-924 SLALRQVRAI LEDLGLSLTS DDALMVLEVC QAVSQRAAQL CGAGVAAVVE BACU002871/1-256 SLALRQVRAI LEDLGLSLTS DDALMVLEVC QAVSQRAAQL CGAGVAAVVE 851 900 ENSBTAP00000019834/1-924 KIRENRGLEE LTISVGVDGT LYKLHPHFSS LVAATVRELA PRCVVTFLQS ENSTTRP00000011561/1-923 KIRENRGLEE LTVSVGVDGT LYKLHPHFSS LVAATVRELA PRCVVTFLQS bmy_08390T0/1-924 KIRENRGLEE LTVSVGVDGT LYKLHPHFSS LVAATVRELA PRCVVTFLQS BACU002871/1-256 KIRENRGLEE LTVSVGVDGT LYKLHPHFSS LVAATVRELA PRCVVTFLQS 901 950 ENSBTAP00000019834/1-924 EDGSGKGAAL VTAVACRLAQ RTRI ENSTTRP00000011561/1-923 EDGSGKGAAL VTAVACRLAQ MPCV bmy_08390T0/1-924 EDGSGKGAAL VTAVACRLAQ MTCV BACU002871/1-256 EDGSGKGAAL VTAVACRLAQ MTCV