KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:09:27 2014 Check: 00 .. Name: ENSTTRP00000006213/1-559 Len: 830 Check: 8294 Weight: 1.00 Name: ENSBTAP00000019836/1-744 Len: 830 Check: 600 Weight: 1.00 Name: ENSP00000383954/1-753 Len: 830 Check: 2191 Weight: 1.00 Name: BACU009073/1-698 Len: 830 Check: 231 Weight: 1.00 Name: bmy_21967T0/1-648 Len: 830 Check: 7329 Weight: 1.00 // 1 50 ENSTTRP00000006213/1-559 MADKRKLQGE IDRCLKKVSE GVEQFEDIWQ KLHNAANANQ KEKYEADLKK ENSBTAP00000019836/1-744 MADKRKLQGE IDRCLKKVSE GVEQFEDIWQ KLHNAANANQ KEKYEADLKK ENSP00000383954/1-753 MADKRKLQGE IDRCLKKVSE GVEQFEDIWQ KLHNAANANQ KEKYEADLKK BACU009073/1-698 MADKRKLQGE IDRCLKKVSE GVEQFEDIWQ KLHNAANANQ KEKYEADLKK bmy_21967T0/1-648 MADKRKLQGE IDRCLKKVSE GVEQFEDIWQ KLHNAANANQ KEKYEADLKK 51 100 ENSTTRP00000006213/1-559 EIKKLQRLRD QIKTWVASNE IKDK------ ---------- ---------- ENSBTAP00000019836/1-744 EIKKLQRLRD QIKTWVASNE IKDK------ ---------- ---------- ENSP00000383954/1-753 EIKKLQRLRD QIKTWVASNE IKDK------ ---------- ---------- BACU009073/1-698 EIKKLQRLRD QIKTWVASNE IKDKRQLIDN RKLIETRLRD QIKTWVASNE bmy_21967T0/1-648 EIKKLQRLRD QIKTWVASNE IKDK------ ---------- ---------- 101 150 ENSTTRP00000006213/1-559 ----RQLIDN RKLIETQMER FKVVERETKT KAYSKEGLGL AQKVDPAQKE ENSBTAP00000019836/1-744 ----RQLIDN RKLIETQMER FKVVERETKT KAYSKEGLGL AQKVDPAQKE ENSP00000383954/1-753 ----RQLIDN RKLIETQMER FKVVERETKT KAYSKEGLGL AQKVDPAQKE BACU009073/1-698 IKDKRQLIDN RKLIETQMER FKVVERETKT KAYSKEGLGL AQKVDPAQKE bmy_21967T0/1-648 ----RQLIDN RKLIETQMER FKVVERETKT KAYSKEGLGL AQKVDPAQKE 151 200 ENSTTRP00000006213/1-559 KEEVGQWLTN TIDTLNMQVD QFESEVESLS VQTRKKKGDK D-XXXXXXXX ENSBTAP00000019836/1-744 KEEVGQWLTN TIDTLNMQVD QFESEVESLS VQTRKKKGDK D-KQDRIEGL ENSP00000383954/1-753 KEEVGQWLTN TIDTLNMQVD QFESEVESLS VQTRKKKGDK D-KQDRIEGL BACU009073/1-698 KEEVGQWLTN TIDTLNMQVD QFESEVESLS VQTRKKKGDK D-KQDRIEGL bmy_21967T0/1-648 KEEVGQWLTN TIDTLNMQVD QFESEVESLS VQTRKKKGDK DQKQDRIEGL 201 250 ENSTTRP00000006213/1-559 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000019836/1-744 KRHIEKHRYH VRMLETILRM LDNDSILVDA IRKIKDDVEY YVDSSQDPDF ENSP00000383954/1-753 KRHIEKHRYH VRMLETILRM LDNDSILVDA IRKIKDDVEY YVDSSQDPDF BACU009073/1-698 KRHIEKHRYH VRMLETILRM LDNDSILVDA IRKIKDDVEY YVDSSQDPDF bmy_21967T0/1-648 KRHIEKHRYH VRMLETILRM LDNDSILVDA IRKIKDDVEY YVDSSQDPDF 251 300 ENSTTRP00000006213/1-559 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000019836/1-744 EENEFLYDDL DLEDIPQALV ATSPPSHSHM EDEIFNQSSS TPTSTTSSSP ENSP00000383954/1-753 EENEFLYDDL DLEDIPQALV ATSPPSHSHM EDEIFNQSSS TPTSTTSSSP BACU009073/1-698 EENEFLYDDL DLEDIPQALV ATSPPSHSHM EDEIFNQSSS TPTSTTSSSP bmy_21967T0/1-648 EENEFLYDDL DLEDIPQALV ATSPPSHSHM EDEIFNQSSS TPTSTTSSSP 301 350 ENSTTRP00000006213/1-559 XXXXXXXXXX ENSEDDKKRG RSTDSEISQS PAKNGSKPVH SSQHPQSPAV ENSBTAP00000019836/1-744 IPPSPANCTT ENSEDDKKRG RSTDSEVSQS PAKNGSKPVH SSQHPQSPAV ENSP00000383954/1-753 IPPSPANCTT ENSEDDKKRG RSTDSEVSQS PAKNGSKPVH SNQHPQSPAV BACU009073/1-698 IPPSPANCTT ENSEDDKKRG RSTDSEIS-- ---------- ---------- bmy_21967T0/1-648 IPPSPANCTT ENSEDDKKRG RSTDSEISQS PAKNGSKPVH SSQHPQSPAV 351 400 ENSTTRP00000006213/1-559 PPSYPSGPPP AASALSTAPG NNGAPAPAAP PSALGAKASP APSHSSGTPA ENSBTAP00000019836/1-744 PPSYPPGPPP AASALSATPG SNGAPAAAAP ASALGAKASP APSHSAGTPA ENSP00000383954/1-753 PPTYPSGPPP AASALSTTPG NNGVPAPAAP PSALGPKASP APSHNSGTPA BACU009073/1-698 ---------- ---------- ---------- ---------- ---------- bmy_21967T0/1-648 PPSYPSGPPP AASALSTAPG NNGAPAPAAP PSALGAKASP APSHNSGTPA 401 450 ENSTTRP00000006213/1-559 PYAQAVAPPA SSGPSPAQPR PPSVQPGGGG GGG------- ---------- ENSBTAP00000019836/1-744 PYAQAVAPPA PSGPPSAQPR PPSAQPGAGS GGGGNSGG-- -------GGG ENSP00000383954/1-753 PYAQAVAPPA PSGPSTTQPR PPSVQPSGGG GGGSGGGGSS SSSNSSAGGG BACU009073/1-698 ---QAVAPPA PSGPSPAQPR PPSVQPGGGG GGG------- ---------- bmy_21967T0/1-648 PYAQAVAPPA PSGPSPAQPR PPSVQPGGGG GGG------- ---------- 451 500 ENSTTRP00000006213/1-559 --KQNGATSY SSVVADSPAE VALSSGGGSS ANSQALGPPS GPHNPPPSTS ENSBTAP00000019836/1-744 AGKQNGATSY SSVVADSPAE AALSSTGGSS TGSQALGPPP GPHNPPPSTA ENSP00000383954/1-753 AGKQNGATSY SSVVADSPAE VALSSSGGNN ASSQALGPPS GPHNPPPSTS BACU009073/1-698 -SKQNGATSY SSVVADSPAE VALSSGGGSS ANSQALGPPS GPHNPPPSSS bmy_21967T0/1-648 -GKQNGATSY SSVVADSPAE VALSSGGGSS ANSQALGPPS GPHNPPPSTS 501 550 ENSTTRP00000006213/1-559 KEPNATAPTG AGGVAPGSGN NSGGPSLLVP LPVNPPSSPT PSFSEAKAAG ENSBTAP00000019836/1-744 KEPSATAPVG AGGVAPGSGN NAGGPSLLVP LPVNPPSSPT PSFSEAKAAG ENSP00000383954/1-753 KEPSAAAPTG AGGVAPGSGN NSGGPSLLVP LPVNPPSSPT PSFSDAKAAG BACU009073/1-698 KEPNATAPTG AGGVAPGSGN NSGGPSLLVP LPVNPPSSPT PSFSEAKAAG bmy_21967T0/1-648 KEPNATAPTG AGGVAPGSGN NSGGPSLLVP LPVNPPSSPT PSFSEAKAAG 551 600 ENSTTRP00000006213/1-559 ALLNGPPQFS AAPEIKAPEP LSSLKSMAER AAISSGIEDP VPTLHLTER- ENSBTAP00000019836/1-744 SLLNGPPQFS AAPEIKAPEP LSSLKSMAER AAISSGIEDP VPTLHLTER- ENSP00000383954/1-753 ALLNGPPQFS TAPEIKAPEP LSSLKSMAER AAISSGIEDP VPTLHLTER- BACU009073/1-698 ALLNGPPQFS AAPEIKAPEP LSSLKSMAER AAISSGIEDP VPTLHLTER- bmy_21967T0/1-648 ALLNGPPQFS AAPEIKAPEP LSSLKSMAER AAISSGIEDP VPTLHLTERG 601 650 ENSTTRP00000006213/1-559 ---------- ---------- ---------D IILSSTSAP- ---------- ENSBTAP00000019836/1-744 ---------- ---------- ---------D ILLSSTSAPP ASAQPPLQLS ENSP00000383954/1-753 ---------- ---------- ---------D IILSSTSAPP ASAQPPLQLS BACU009073/1-698 ---------- ---------- ---------D IILSSTSAPP ASAQPALQLS bmy_21967T0/1-648 EHPGVGRAVQ EGLDAPASPL AGPTSALPAD IILSSTSAPP ASAQPALQLS 651 700 ENSTTRP00000006213/1-559 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019836/1-744 EVNIPLSLGV CPLGPVPLTK EQLYQQAMEE AAWHHMPHPS DSERIRQYLP ENSP00000383954/1-753 EVNIPLSLGV CPLGPVPLTK EQLYQQAMEE AAWHHMPHPS DSERIRQYLP BACU009073/1-698 EVNIPLSLGV CPLGPVPLTK EQLYQQAMEE AAWHHMPHPS DSERIRQYLP bmy_21967T0/1-648 EVNIPLSLGV CPLGPVPLTK EQLYQQAMEE AAWHHMPHPS DSERIR---- 701 750 ENSTTRP00000006213/1-559 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019836/1-744 RNPCPTPPYH HQMPPPHSDT VEFYQRLSTE TLFFIFYYLE GTKAQYLAAK ENSP00000383954/1-753 RNPCPTPPYH HQMPPPHSDT VEFYQRLSTE TLFFIFYYLE GTKAQYLAAK BACU009073/1-698 RNPCPTPPYH HQMPPPHSDT VEFYQRLSTE TL-------- GTKAQYLAAK bmy_21967T0/1-648 ---------- ---------- ---------- ---------- ---------- 751 800 ENSTTRP00000006213/1-559 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019836/1-744 ALKKQSWRFH TKYMMWFQRH EEPKTITDEF E--------- -------QGT ENSP00000383954/1-753 ALKKQSWRFH TKYMMWFQRH EEPKTITDEF E--------- -------QGT BACU009073/1-698 ALKKQSWRFH TKYMMWFQRH EEPKTITDEF EQIPDHLVHS LTAFSPGQGT bmy_21967T0/1-648 ---------- ---------- ---------- ---------- ---------- 801 850 ENSTTRP00000006213/1-559 ---------- ---------- ---------- ENSBTAP00000019836/1-744 YIYFDYEKWG QRKKEGFTFE YRYLEDRDLQ ENSP00000383954/1-753 YIYFDYEKWG QRKKEGFTFE YRYLEDRDLQ BACU009073/1-698 YIYFDYEKWG QRKKEGFTFE YRYLEDRDLQ bmy_21967T0/1-648 ---------- ---------- ----------