KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:09:33 2014 Check: 00 .. Name: ENSP00000299001/1-852 Len: 1090 Check: 5974 Weight: 1.00 Name: ENSBTAP00000019851/1-856 Len: 1090 Check: 5232 Weight: 1.00 Name: ENSTTRP00000010011/1-850 Len: 1090 Check: 3064 Weight: 1.00 Name: bmy_15507T0/1-892 Len: 1090 Check: 4170 Weight: 1.00 Name: BACU011088/1-972 Len: 1090 Check: 8925 Weight: 1.00 // 1 50 ENSP00000299001/1-852 MSGRARVKAR GIARSPSATE VGRIQASP-- LPRSVDLSNN EASSSNGFLG ENSBTAP00000019851/1-856 KSGRARVRAR GMARSLGAAE VGRARGPPGL LPPSVALIDN EASSSSDCER ENSTTRP00000010011/1-850 MSGRARARAR GMALSPSAAE VGRIQASP-- LPLSVALSDS EASSSSDHVG bmy_15507T0/1-892 MSGRARVRAR GMARSPSATE VGRIQASP-- SPLSVALSDS EASSSSDHVG BACU011088/1-972 ---------- ---------- ---MQASP-- SPLSVALSDS EASSSSDHVG 51 100 ENSP00000299001/1-852 TSRISTNDKY GISSGDAGST FMERGVKNKQ DFMDLSICTR EKLAHVRNCK ENSBTAP00000019851/1-856 TSRISQKC-- GISPSDSGCT FKERGGKVRR DIMDLAVCTR EKLAHVRDCK ENSTTRP00000010011/1-850 TSRISQKCEG GLSSGDAGCT FKERVGKIRR EMMDLSVCTR EKLAHVRDCK bmy_15507T0/1-892 TSRISQKC-- ---------- ---------- ---------- ---------- BACU011088/1-972 TSRISQKYEG GLSSGDAGCT VKERGGKIRR EMTDLSVCTR EKLAHVRDCK 101 150 ENSP00000299001/1-852 TGSSGIPVKL VTNLFNLDFP QDWQLYQYHV TYIPDLASRR LRIALLYSHS ENSBTAP00000019851/1-856 TGSSGIPVKL VTNLFNLDVP QDWQLYQYHV TYSPDIESRR LRIALLYSHR ENSTTRP00000010011/1-850 RGSSGIPVKL VTNLFNLDLP QDWQLYQYHV TYSPDIESRR LRIALLYSHT bmy_15507T0/1-892 --SSGIPVKL VTNLFNLDLP QDWRLYQYHV TYSPDIESRR LRTALLYSRR BACU011088/1-972 RGSSGIPVKL VTNLFNLDLP QDWRLYQYHV TYSPDIESRR LRTALLYSRR 151 200 ENSP00000299001/1-852 ELSNKAKAFD GAILFLSQKL EE-------- ---------- ---------- ENSBTAP00000019851/1-856 ELSNKAKAFD GVILFLSQKL EE-------- ---------- ---------- ENSTTRP00000010011/1-850 ELSNKAKAFD GVILFLSQKL EE-------- ---------- ---------- bmy_15507T0/1-892 ELSNKAKAFD GVILFLSQKL EE-------- ---------- ---------- BACU011088/1-972 ELSNKAKAFD GVILFLSQKL EEKTLHNPAP ELSEDPFLAE NGFGYAQLAA 201 250 ENSP00000299001/1-852 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019851/1-856 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010011/1-850 ---------- ---------- ---------- ---------- ---------- bmy_15507T0/1-892 ---------- ---------- ---------- ---------- ---------- BACU011088/1-972 RAPSPSSPAC SLGFTGPASA NDTLSAKPAA KVETKPKKAA GKNKSSDKKR 251 300 ENSP00000299001/1-852 ---------- ---------- --KVTELSSE TQRGETIKMT ITLKRELPSS ENSBTAP00000019851/1-856 ---------- ---------- --KVTELSSE TQRGETVKMT ITLTRELPAS ENSTTRP00000010011/1-850 ---------- ---------- --KVTELSSE TRRGETVKMT ITLTRELPAS bmy_15507T0/1-892 ---------- ---------- --KVMELSSE TQRGETVKMT ITLTRELPAS BACU011088/1-972 CKQKGKGEQR ENRLKRLTKR LKKVMELSSE TQRGETVKMT ITLTRELPAS 301 350 ENSP00000299001/1-852 SPVCIQVFNI IFRKILKKLS MYQIGRNFYN PSEPMEIPQH KLSLWPGFAI ENSBTAP00000019851/1-856 SPVCIQVFNI IFKKILKKLS MYQIGRNFYK PSEPVEIPQH KLSLWPGFAI ENSTTRP00000010011/1-850 SPVCMQVFSI IFKKILKKLS MYQIGRNFYK PSEPVEIPQH KLSLWPGFAV bmy_15507T0/1-892 SPVCIQVFSI IFKKILKKLS MYQIGRNFYK PSEPVEIPRH KLSLWPGFAI BACU011088/1-972 SPVCIQVFSI IFKKILKKLS MYQIGRNFYK PSEPVEIPRH KLSLWPGFAI 351 400 ENSP00000299001/1-852 SVSYFERKLL FSADVSYKVL RNETVLEFMT ALCQRTGLSC FTQTCEKQLI ENSBTAP00000019851/1-856 SVSHFESKLL LSANVSYKIL RNETVLEFMT DLCRKTSESC FTQTCEKQLV ENSTTRP00000010011/1-850 SVSHFESRLL FCADVSYKIL RNETVLEFMT DLCHKTGMSC FTQTCEKQLI bmy_15507T0/1-892 SVSHFESKLL FGADVSYKIL RNETVLEFMT DLCLKTGMSC YTQTCEKQLI BACU011088/1-972 SVSHFESKLL FGADVSYKIL RNETVLEFMT DLCHKTGMSC CTQTCEKQLI 401 450 ENSP00000299001/1-852 GLIVLTRYNN RTYSIDDIDW SVKPTHTFQK RDGTEITYVD YYKQQYDITV ENSBTAP00000019851/1-856 GLIVLTRYNN KTYRIDDIDW SVKPTHTFRK RDGAEITYVD YYKQQYDITL ENSTTRP00000010011/1-850 GLIVITRYNN KTYRIDDIDW SVKPTHTFQK RDGTEITYVD YYKQQYDITL bmy_15507T0/1-892 GLIVLTRYNN KTYRIDDIDW SVKPTHTFQK RDGTEITYVD YYKQQYDITL BACU011088/1-972 GLIVLTRYNN KTYRIDDIDW SVKPTHTFQK RDGTEITYVD YYKQQYDITL 451 500 ENSP00000299001/1-852 SDLNQPMLVS LLKKKRNDNS EAQLAHLIPE LCFLT---GL TDQATSDFQL ENSBTAP00000019851/1-856 SDLNQPVLVS LLKNKKNDNS EAQMAHLIPE LCFLTECIGM PGQATSDFQL ENSTTRP00000010011/1-850 SDLNQPVLVS LLKSKRNDDA EVRMAHLIPE LCFLT---GL PGEATSDFRL bmy_15507T0/1-892 SDLNQPVLVS LLKNKRNDDA DVRMAHLIPE LCYLT---GL PGQATSDFQL BACU011088/1-972 SDLNQPVLVS LLKNKRNDDA DVRMAHLIPE LCYLT---GL PGQATSDFQL 501 550 ENSP00000299001/1-852 MKAVAEKTRL SPSGRQQRLA RLVDNIQRNT NARFELETWG LHFGSQISLT ENSBTAP00000019851/1-856 MKAVAKETRL DPLVRQQHLA RLADDFQRNK DARFELETWG LHFGCQMSLT ENSTTRP00000010011/1-850 MKAVAEETRL SPLGRQQRLA RLADDIQXXX XA-FELETWG LH-GCQMSLT bmy_15507T0/1-892 MKAVAEETRL SPLGRQQRLA RLADDIQRNK DARFELETWG LHFGCQMSLT BACU011088/1-972 MKAVAEETRL SPLGRQQRLA RLADDIQRNK DARFELETWG LHFGCQMSLT 551 600 ENSP00000299001/1-852 GRIVPSEKIL MQDHI----- ---------- ---------- ---------- ENSBTAP00000019851/1-856 GRIAPAEKII MQDHI----- ---------- ---------- ---------- ENSTTRP00000010011/1-850 GRVVPSENII IQDHT----- ---------- ---------- ---------- bmy_15507T0/1-892 GRVVPSEKII VQDHI----- ---------- ---------- ---------- BACU011088/1-972 GRVVPSEKII IQDHIVKSYL SELCLQFLAW KQVSIGEGAL KWRTCPLEAM 601 650 ENSP00000299001/1-852 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019851/1-856 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010011/1-850 ---------- ---------- ---------- ---------- ---------- bmy_15507T0/1-892 ---------- ---LILLSGN WVRRTEYTKG SQASEWAVAI CPGPPASPQQ BACU011088/1-972 VGGLEVAVSS TSQLILLSGN WVRGTEYTKG SQASERAVAV CPGPPASPQQ 651 700 ENSP00000299001/1-852 CQPVSAADWS KDIRTCKILN AQSLNTWLIL CSDRTEYVAE SFLNCLRRVA ENSBTAP00000019851/1-856 CQPASAADWS KDIRTCKVLS AQSLNKWLVI CSNRAESVTE NFLNCLRRVG ENSTTRP00000010011/1-850 CQPVSAADWS KDMRTCKILS AQSLNKWLVM CSNRAERVTE SFLNCLRRVG bmy_15507T0/1-892 CEPVSAADWS KDMRTCKILS AQSLNKWLVI CSNRAESVTE SFLNCLRRVG BACU011088/1-972 CEPVSAADWS KDMRTCKILS AQSLNKWLVI CSNRAESVTE SFLNCLRRVG 701 750 ENSP00000299001/1-852 GSMGFNVDYP KIIKVQENPA AFVRAIQQYV DPDVQLVMCI LPSNQKTYYD ENSBTAP00000019851/1-856 GPMGFNVDRP KIIKVQENPA AFIHAIQKHV KYEVQLVMCI LPSIQTSYYD ENSTTRP00000010011/1-850 RPIGFNVNHP KIIKVQENPA AFLHAIQKYV DPEVQLVMCI LPSNQNSYYD bmy_15507T0/1-892 RPLGFNVDQP KIMKVQENPA AFLHAIQKYV DPEVQLVMCI LPSNQKSYYD BACU011088/1-972 RPLGFNVDQP KIMKVQENPA AFLHAIQKYV DPEVQLVMCI LPSNQKSYYD 751 800 ENSP00000299001/1-852 SIKKYLSSDC PVPSQCVLAR TLNKQGMMMS IATKIAMQMT CKLGGELWAV ENSBTAP00000019851/1-856 SIKKYLSSDC PVPSQCVLAQ TLNKQGMMLS VATKIAMQMI CKLGGELWAV ENSTTRP00000010011/1-850 SIKKYLSSDC PIPSQCVLAQ TLNKQGMLMS IATKIALQMT CKLGGELWAV bmy_15507T0/1-892 SIKKYLSSDC PVPSQCVLAQ TLNKQGMMMS IATKIALQMT CKLGGELWAV BACU011088/1-972 SIKKYLSSDC PVPSQCVLAQ TLNKQGMMMS IATKIALQMT CKLGGELWAV 801 850 ENSP00000299001/1-852 EIPLKSLMVV GIDVCKDALS KDVMVVGCVA SVNPRITRWF SRCILQRTMT ENSBTAP00000019851/1-856 EIPLKSLMVV GINVCKDAFS QGTMVVGFVA SINPRITRWF SRCILQRTTA ENSTTRP00000010011/1-850 EIPLKSLMVV GIDVCKDAFN QGMVVVGFVA SINPKITRWF SRCMLQRTTA bmy_15507T0/1-892 EIPLKSLMVV GIDVCKDAFS QGMVVVGFVA SINPRITRWF SHCVLQRTTA BACU011088/1-972 EIPLKSLMVV GIDVCKDAFS QGMVVVGFVA NSNPRITRWF SRCVLQRTSA 851 900 ENSP00000299001/1-852 DVADCLKVFM ---------- ---------- --------TG ALNKWYKYNH ENSBTAP00000019851/1-856 HVADCLKVFM ---------- ---------- --------IG ALNRWYRHNQ ENSTTRP00000010011/1-850 DVADCLKVFM ---------- ---------- --------TG ALNRWYKHNQ bmy_15507T0/1-892 DVADCLKVFM IGTKNVTMGV GSKHCSFRPK IHKPLADQTG ALNRWYKHNH BACU011088/1-972 DVADCLKVFM ---------- ---------- --------TG ALNRWYKHNH 901 950 ENSP00000299001/1-852 DLPARIIVYR AGVGDGQLKT LIEYEVPQLL SSVAE-SSSN TSSRLSVIVV ENSBTAP00000019851/1-856 GLPARIIVYR DGVGDGQLQT LVDYEVPQLL SSVIEFASLV LSPKLSVIVV ENSTTRP00000010011/1-850 GLPGRIIVYR DGVGDGQLRT LIEYEVPQLL SSVTE-ASSN TSPKLSVIVV bmy_15507T0/1-892 GLPARIIVYR DGVGDGQLKT LIEYEIPQLL SSVSE-ASSN TSPKLSVIVV BACU011088/1-972 GLPARIIVYR DGVGDGQLKT LIEYEIPQLL SSVSE-ASSN TR-------- 951 1000 ENSP00000299001/1-852 RKKCMPRFFT EMNRTVQNPP LGTVVDSEAT RNEW------ ---------- ENSBTAP00000019851/1-856 RKKGMPRFLV ETGRNLQNPP LGTVVDSEAT RPEW------ ---------- ENSTTRP00000010011/1-850 RKKCMPRFLM ETGRTLQNPP LGTIVDSGAT RPEW------ ---------- bmy_15507T0/1-892 RKKCMPRFLT ETGRTLQNPP PGTIVDSGAT RPEWQVWSCS ASLLSHGPSF BACU011088/1-972 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSP00000299001/1-852 ---YDFYLIS QVACRGTVSP TYYNVIYDDN GLKPDHMQRL TFKLCHLYYN ENSBTAP00000019851/1-856 ---YDFYLIS QMACRGTVNP TYYNVIYDDN GLKPDHMQRL TFKLCHVYYN ENSTTRP00000010011/1-850 ---YDFYLIS RVACRGTLNP TYYNVIYDDN GLKPDHMQRL TFKLCHLYYN bmy_15507T0/1-892 PLRYDFYLIS RVTCRGTISP TYYNVIYDDN GLKPDHMQRL TFKLCHLYYN BACU011088/1-972 ---YDFYLIS RVTCRGTISP TYYNVIYDDN GLKPDHMQRL TFKLCHLYYN 1051 1100 ENSP00000299001/1-852 WPGIVSVPAP CQYAHKLTFL VAQSIHKEPS LELANHLFYL ENSBTAP00000019851/1-856 WMGLISIPAP CQYARKLTFL VAQSLHKEPS LELANSLFYL ENSTTRP00000010011/1-850 WPGLISVPAP CQYAHKLTFL VAQSTHKEPS LELANSLFYL bmy_15507T0/1-892 WPGLISVPAP CQYAHKLTFL VAQSTHKEPS LELANSLFYL BACU011088/1-972 WPGLISVPAP CQYAHKLTFL VAQSTHKEPS LELANSLFYL