KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:09:35 2014 Check: 00 .. Name: bmy_11069T0/1-576 Len: 641 Check: 760 Weight: 1.00 Name: BACU016550/1-555 Len: 641 Check: 3999 Weight: 1.00 Name: ENSP00000306894/1-510 Len: 641 Check: 3278 Weight: 1.00 Name: ENSTTRP00000000761/1-510 Len: 641 Check: 4123 Weight: 1.00 Name: ENSBTAP00000019858/1-510 Len: 641 Check: 2577 Weight: 1.00 // 1 50 bmy_11069T0/1-576 -MSLFQMQVM KLKKVERKTP KPNQSGGTRQ KAGRAHI-KS EKYFPGHVT- BACU016550/1-555 MDGFYDQQVP FM------VP GKSRSEESR- --GRPVIDRK RKFLDTDLAH ENSP00000306894/1-510 MDGFYDQQVP FM------VP GKSRSEECR- --GRPVIDRK RKFLDTDLAH ENSTTRP00000000761/1-510 MDGFYDQQVP FM------VP GKSRSEESR- --GRPVIDRK RKFLDTDLAH ENSBTAP00000019858/1-510 MDGFYDQQVP FM------VP GKSRSEESR- --GRPVIDRK RKFLDTDLAH 51 100 bmy_11069T0/1-576 ---------- ---------- ---------- ---------- -------SVY BACU016550/1-555 DSEGSEAFPS VVARSHGSPR KLHAASSSLF SLAEEFSSFW CFLFSIPELF ENSP00000306894/1-510 DSE------- ---------- ---------- ---------- -------ELF ENSTTRP00000000761/1-510 DSE------- ---------- ---------- ---------- -------ELF ENSBTAP00000019858/1-510 DSE------- ---------- ---------- ---------- -------ELF 101 150 bmy_11069T0/1-576 AGASSPSLII LPKLLWQKT- ---------- ---VVLHAPP PAKIKRELHS BACU016550/1-555 QDLSQLQEAW LAEGKFLGSV LCSSLIPLLI L--VVLHAPP PAKIKRELHS ENSP00000306894/1-510 QDLSQLQEAW LAEAQVPDD- --EQFVPDFQ SDNLVLHAPP PTKIKRELHS ENSTTRP00000000761/1-510 QDLSQLQEAW LAEAQVPDD- --EQFVPDFQ SDNLVLHAPP PTKIKRELHS ENSBTAP00000019858/1-510 QDLSQLQEAW LAEAQVPDD- --EQFVPDFQ SDNLVLHAPP PTKIKRELHS 151 200 bmy_11069T0/1-576 PSSELSSCSH EQALGANYGE KCLYNYCAYD RKPPSGFKPL TPPTTPLSPT BACU016550/1-555 PSSELSSCSH EQALGANYGE KCLYNYCAYD RKPPSGFKPL TPPTTPLSPT ENSP00000306894/1-510 PSSELSSCSH EQALGANYGE KCLYNYCAYD RKPPSGFKPL TPPTTPLSPT ENSTTRP00000000761/1-510 PSSELSSCSH EQALGANYGE KCLYNYCAYD RKPPSGFKPL TPPTTPLSPT ENSBTAP00000019858/1-510 PSSELSSCSH EQALGANYGE KCLYNYCAYD RKPPSGFKPL TPPTTPLSPT 201 250 bmy_11069T0/1-576 HQNSLFPPPQ ATLPTS-AHA PAAGPVPGVG PTPSPHSLPE PGPQQQTFAV BACU016550/1-555 HQNSLFPPPQ ATLPTS-AHA PAAGPVPGVG PTPSPHSLPE PGPQQQTFAV ENSP00000306894/1-510 HQNPLFPPPQ ATLPTS-GHA PAAGPVQGVG PAPAPHSLPE PGPQQQTFAV ENSTTRP00000000761/1-510 HQNSLFPPPQ ATLPTS-AHA PAAGPVPGVG PTPSPHSLPE PGPQQQTFAV ENSBTAP00000019858/1-510 HQNSLFPPPQ ATLPTSAAHA PAAGPVPGVG PTPTPHSLPE PGPQQQTFAV 251 300 bmy_11069T0/1-576 PRPPHQPLQM PKMMPESQYP SEQRWVWGRR TGEEGCFLER EELDRLCLLY BACU016550/1-555 PRPPHQPLQM PKMMPESQYP SEQR------ ---------- ---------- ENSP00000306894/1-510 PRPPHQPLQM PKMMPENQYP SEQR------ ---------- ---------- ENSTTRP00000000761/1-510 PRPPHQPLQM PKMMPENQYP SEQR------ ---------- ---------- ENSBTAP00000019858/1-510 PRPPHQPLQM PKMMPENQYP SEQR------ ---------- ---------- 301 350 bmy_11069T0/1-576 VLAAETEKEM QKKHLTVFIM FLVFIDLQKC IQGDISIFIF MISAVVMIFQ BACU016550/1-555 ---------- ---------- ---------- ---------- --------FQ ENSP00000306894/1-510 ---------- ---------- ---------- ---------- --------FQ ENSTTRP00000000761/1-510 ---------- ---------- ---------- ---------- --------FQ ENSBTAP00000019858/1-510 ---------- ---------- ---------- ---------- --------FQ 351 400 bmy_11069T0/1-576 RQLSEPCHPF PPQSGVPGDN RPNYHRQMSE PIVPAPPPPP QGFKQEYHDP BACU016550/1-555 RQLSEPCHPF PPQSGVPGDN RPNYHRQMSE PIVPAPPPPP QGFKQEYHDP ENSP00000306894/1-510 RQLSEPCHPF PPQPGVPGDN RPSYHRQMSE PIVPAAPPPP QGFKQEYHDP ENSTTRP00000000761/1-510 RQLSEPCHPF PPQSGVPGDN RPNYHRQMSE PIVPAPPPPP QGFKQEYHDP ENSBTAP00000019858/1-510 RQLSEPCHPF PPQSGVPGDN RPNYHRQMSE PIVPAAPPPP QGFKQEYHDP 401 450 bmy_11069T0/1-576 LYEHGVPGMP GPPAHGFQSP MGIKQEPRDY CVDSEVPNCQ SSYMRGGYFS BACU016550/1-555 LYEHGVPGMP GPPAHGFQSP MGIKQEPRDY CVDSEVPNCQ SSYMRGGYFS ENSP00000306894/1-510 LYEHGVPGMP GPPAHGFQSP MGIKQEPRDY CVDSEVPNCQ SSYMRGGYFS ENSTTRP00000000761/1-510 LYEHGVPGMP GPPAHGFQSP MGIKQEPRDY CVDSEVPNCQ SSYMRGGYFS ENSBTAP00000019858/1-510 LYEHGVPGMP GPPAHGFQSP MGIKQEPRDY CVDSEVPNCQ -SYMRGGYFS 451 500 bmy_11069T0/1-576 SSHEGFSYEK DPRLYFDDTC VVPERLEGKV KQEPTMYREG PPYQRRGSLQ BACU016550/1-555 SSHEGFPYEK DPRLYFDDTC VVPERLEGKV KQEPTMYREG PPYQRRGSLQ ENSP00000306894/1-510 SSHEGFSYEK DPRLYFDDTC VVPERLEGKV KQEPTMYREG PPYQRRGSLQ ENSTTRP00000000761/1-510 SSHEGFSYEK DPRLYFDDTC VVPERLEGKV KQEPTMYREG PPYQRRGSLQ ENSBTAP00000019858/1-510 GSHEGFSYEK DPRLYFDDTC VVPERLEGKV KQEPTMYREG PPYQRRGSLQ 501 550 bmy_11069T0/1-576 LWQFLVTLLD DPANAHFIAW TGRGMEFKLI EPEEVARRWG IQKNRPAMNY BACU016550/1-555 LWQFLVTLLD DPANAHFIAW TGRGMEFKLI EPEEVARRWG IQKNRPAMNY ENSP00000306894/1-510 LWQFLVTLLD DPANAHFIAW TGRGMEFKLI EPEEVARRWG IQKNRPAMNY ENSTTRP00000000761/1-510 LWQFLVTLLD DPANAHFIAW TGRGMEFKLI EPEEVARRWG IQKNRPAMNY ENSBTAP00000019858/1-510 LWQFLVTLLD DPANAHFIAW TGRGMEFKLI EPEEVARRWG IQKNRPAMNY 551 600 bmy_11069T0/1-576 DKLSRSLRYY YEKGIMQKVA GERYVYKFVC DPDALFSMAF PDNQRPFLKA BACU016550/1-555 DKLSRSLRYY YEKGIMQKVA GERYVYKFVC DPDALFSMAF PDNQRPFLKA ENSP00000306894/1-510 DKLSRSLRYY YEKGIMQKVA GERYVYKFVC DPDALFSMAF PDNQRPFLKA ENSTTRP00000000761/1-510 DKLSRSLRYY YEKGIMQKVA GERYVYKFVC DPDALFSMAF PDNQRPFLKA ENSBTAP00000019858/1-510 DKLSRSLRYY YEKGIMQKVA GERYVYKFVC DPDALFSMAF PDNQRPFLKA 601 650 bmy_11069T0/1-576 ESECHLSEED TLPLTHFEDN PAYLLDVDRC SSLPYAEGFA Y BACU016550/1-555 ESECHLSEED TLPLTHFEDN PAYLLDVDRC SSLPYAEGFA Y ENSP00000306894/1-510 ESECHLSEED TLPLTHFEDS PAYLLDMDRC SSLPYAEGFA Y ENSTTRP00000000761/1-510 ESECHLSEED TLPLTHFEDN PAYLLDVDRC SSLPYAEGFA Y ENSBTAP00000019858/1-510 ESECHLSEED TLPLTHFEDN PAYLLDVDRC GSLPYAEGFA Y