KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:09:37 2014 Check: 00 .. Name: ENSTTRP00000004910/1-775 Len: 899 Check: 6801 Weight: 1.00 Name: BACU018989/1-733 Len: 899 Check: 2790 Weight: 1.00 Name: ENSP00000303212/1-775 Len: 899 Check: 5450 Weight: 1.00 Name: bmy_02511T0/1-868 Len: 899 Check: 9857 Weight: 1.00 Name: ENSBTAP00000019866/1-737 Len: 899 Check: 6524 Weight: 1.00 // 1 50 ENSTTRP00000004910/1-775 ---------- ---------- ---------- ---------- ---------- BACU018989/1-733 ---------- ---------- ---------- ---------- ---------- ENSP00000303212/1-775 ---------- ---------- ---------- ---------- ---------- bmy_02511T0/1-868 MKGLSVGFLV AHTGARASEL FELAATGISH QQSSVLLNED VFDLLGSLIH ENSBTAP00000019866/1-737 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000004910/1-775 ----MASAGY LITWLLWGXX XXXXXXXXXX XXXXXXXXXX XX-------- BACU018989/1-733 ----S----- ---------- ---------- ---------- ---------- ENSP00000303212/1-775 ----MASAGH IITLLLWGYL LELWTGGHTA DTTHPRLRLS HK-------- bmy_02511T0/1-868 EFLVLGHQGF GDGLADWVNL GHETTTVYAD THDHARPRPR IALSEAEAVR ENSBTAP00000019866/1-737 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000004910/1-775 ---------- ---------- ---------- ---------- --XLLDLNRT BACU018989/1-733 ---------- ---------- ---------- ---------- --ELLDLNRT ENSP00000303212/1-775 ---------- ---------- ---------- ---------- --ELLNLNRT bmy_02511T0/1-868 VVALRLPVSP RKSEPAPGRD WFPRHYRKDC DVKRKCSLAR TLQLLDLNRT ENSBTAP00000019866/1-737 ---------- ---------- ---------- ---------- --ELLDLNRT 151 200 ENSTTRP00000004910/1-775 SVFHSPFGFL DLQTMLLDEY QERLFVGGKD LVYSLSLEHI GSDYREXXXX BACU018989/1-733 SVFHSPFGFL DLQTMLLDEY QERLFVGGKD LVYSLSLEHI SSDYREVWKQ ENSP00000303212/1-775 SIFHSPFGFL DLHTMLLDEY QERLFVGGRD LVYSLSLERI SDGYKEIHWP bmy_02511T0/1-868 SVFHSPFGFL DLQTMLLDEY QERLFVGGKD LVYSLSLEHI SSDYREIHWP ENSBTAP00000019866/1-737 SVFHSRFGFL NLQTMLLDEY QERLFVGGKD LVYSLSLEHI SSGYREIHWP 201 250 ENSTTRP00000004910/1-775 XXXXXXXXXX XXXXXXSECA NYVRVLHHYN RTHLLTCGTG AFDPLCAFIR BACU018989/1-733 QTIFQERKKR SKGGKPPECA NYVRVLHHYN RTHLLTCGTG AFDPLCAFIR ENSP00000303212/1-775 STALKMEECI MKGKDAGECA NYVRVLHHYN RTHLLTCGTG AFDPVCAFIR bmy_02511T0/1-868 STAVKTEECI MKGKDASECA NYVRVLHHYN RTHLLTCGTG AFDPLCAFIR ENSBTAP00000019866/1-737 STALKTEECI MKGNDASECA NYVRVLHHYN RTHLLTCGTG AFDPLCAFIR 251 300 ENSTTRP00000004910/1-775 VGYHLEDPLF HLESHRSERG RGRCPFDAGS SFISTLIGSE LFAGLYXXXX BACU018989/1-733 VGYHLEDPLF HLESHRAERG RGRCPFDANS SFISTLIGSE LFAGLYSDYW ENSP00000303212/1-775 VGYHLEDPLF HLESPRSERG RGRCPFDPSS SFISTLIGSE LFAGLYSDYW bmy_02511T0/1-868 VGYHLER--- ---------- ---------- ------LGSE LFAGLYSDYW ENSBTAP00000019866/1-737 VGYHLEAPLF HLESHRSERG RGRCPFDPSS SFISTLIGSE LFAGLYSDYW 301 350 ENSTTRP00000004910/1-775 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU018989/1-733 GRDAAIFRSL GRLAHIRTEH DDERLLKD-- YAQIFLL--N KRSITLAICR ENSP00000303212/1-775 SRDAAIFRSM GRLAHIRTEH DDERLLKEPK FVGSYMIPDN EDRDDNKVYF bmy_02511T0/1-868 GRDAAIFRSL GRLAHIRTEH DDERLLKEPK FVGSYMIPDN EDRDDNKVYF ENSBTAP00000019866/1-737 GRDAAIFRSL GRLAQIRTEH DDERLLKEPK FVGSYMIPDN EDRDDNKVYF 351 400 ENSTTRP00000004910/1-775 XXXXXXXXXX XXXXXXXXXX XXXXX--NDV GGQRILVNKW STFLKARLVC BACU018989/1-733 FNNTKSVVGK SS---LGTHL PAFCFLQNDV GGQRILVNKW STFLKARLVC ENSP00000303212/1-775 FFTEKALEAE NNAHAIYTRV GRLCV--NDV GGQRILVNKW STFLKARLVC bmy_02511T0/1-868 FFTEKALEAE NNAQAIYTRV GRLCV--NDV GGQRILVNKW STFLKARLVC ENSBTAP00000019866/1-737 FFTEKALEAE NSAHAIYTRV GRLCV--NDM GGQRILVNKW STFLKARLVC 401 450 ENSTTRP00000004910/1-775 SVPGMNGIDT YFDELEDVFL LHTRDHKNPV IFGLFNTTSN IFRGHAICVY BACU018989/1-733 SVPGMNGIDT YFDELEDVFL LHTRDHKNPV IFGLFNTTSN IFRGHAICVY ENSP00000303212/1-775 SVPGMNGIDT YFDELEDVFL LPTRDHKNPV IFGLFNTTSN IFRGHAICVY bmy_02511T0/1-868 SVPGMNGIDT YFDELEDVFL LHTRDHKNPV IFGLFNTTSN IFRGHAICVY ENSBTAP00000019866/1-737 SVPGMNGIDT YFDELEDVFL LHTRDHKNPV IFGLFNTTSN IFRGHAICVY 451 500 ENSTTRP00000004910/1-775 HMSSXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXCAS KVNGGRYGTT BACU018989/1-733 HMSSIRAAFN GPYAHKEGPE YHWSLYEGKV PYPRPGSCAS KVNGGRYGTT ENSP00000303212/1-775 HMSSIRAAFN GPYAHKEGPE YHWSVYEGKV PYPRPGSCAS KVNGGRYGTT bmy_02511T0/1-868 HMSSIRAAFN GPYAHKEGPE YHWSLYEGKV PYPRPGSCAS KVNGGRYGTT ENSBTAP00000019866/1-737 HMSSIRAAFN GPYAHKEGPE YHWSLYEGKV PYPRPGSCAS KVNGGRYETT 501 550 ENSTTRP00000004910/1-775 KDYPDDAIRF ARSHPLMHQP IKPAHKKPIL VKTDGKYNLK QIAVDRVEAE BACU018989/1-733 KDYPDDAIRF ARSHPLMYQP IKPAHKKPIL VKTDGKYNLK QIAVDRVEAE ENSP00000303212/1-775 KDYPDDAIRF ARSHPLMYQA IKPAHKKPIL VKTDGKYNLK QIAVDRVEAE bmy_02511T0/1-868 KDYPDDAIRF ARSHPLLYQP IKPAHKKPIL VKTDGKYNLK QIAVDRVEAE ENSBTAP00000019866/1-737 KDYPDDAIRF ARSHPLMYQP IKPAHKKPIL VKTDGKYNLK QIAVDRVEAE 551 600 ENSTTRP00000004910/1-775 DGQYDVLFIG TDNGIVLKVI TIYNQETESM EEVILEELQI FKDPVPIISM BACU018989/1-733 DGQYDVLFIG TDNGIVLKVI TIYNQETESM EEVILEELQI FKDPVPIISM ENSP00000303212/1-775 DGQYDVLFIG TDNGIVLKVI TIYNQEMESM EEVILEELQI FKDPVPIISM bmy_02511T0/1-868 DGQYDVLFIG TDNGIVLKVI TIYNQETESM EEVILEELQI FKDPVPIISM ENSBTAP00000019866/1-737 DGQYDVLFIG TDNGIVLKVI TIYNQETESM EEVILEELQI FKDPVPIISM 601 650 ENSTTRP00000004910/1-775 EISSKRQQLY IGSASAVAQV RFHQCDMYGS ACADCCLARD PYCAWDGISC BACU018989/1-733 EISSKRQQLY IGSASAVAQV RFHQCDMYGS ACADCCLARD PYCAWDGISC ENSP00000303212/1-775 EISSKRQQLY IGSASAVAQV RFHHCDMYGS ACADCCLARD PYCAWDGISC bmy_02511T0/1-868 EISSKRQQLY IGSASAVAQV RFHQCDMYGS ACADCCLARD PYCAWDGISC ENSBTAP00000019866/1-737 EISSKRQQLY IGSASAVAQV RFHQCDMYGS ACADCCLARD PYCAWDGISC 651 700 ENSTTRP00000004910/1-775 SRYYPTGTHA KRRFRRQDVR HGNAAQQCFG QQFVGDVLDK TEERLAYGVE BACU018989/1-733 SRYYPTGTHA KRRFRRQDVR HGNAAQQCFG QQFVGDVLDT TEERLAYGIE ENSP00000303212/1-775 SRYYPTGTHA KRRFRRQDVR HGNAAQQCFG QQFVGDALDK TEEHLAYGIE bmy_02511T0/1-868 SRYYPTGTHA KRRFRRQDVR HGNAAQQCFG QQFVGDVLDK TEERLAYGIE ENSBTAP00000019866/1-737 SRYYPTGTHA KRRFRRQDVR HGNAAQQCFG QQFVGDALDK TEERLAYGIE 701 750 ENSTTRP00000004910/1-775 NNSTLLECTP RSLQAKVIWF VQKGHDTRRE E--------- ---------V BACU018989/1-733 NNSTLLECTP RSLQAKVIWF VQKGHDTRKE E--------- ---------V ENSP00000303212/1-775 NNSTLLECTP RSLQAKVIWF VQKGRETRKE E--------- ---------V bmy_02511T0/1-868 NNSTLLECTP RSLQAKVIWF VQKGHDTRKE EVIHSCTFTP WCLAYSVPSV ENSBTAP00000019866/1-737 NNSTLLECTP RSLQAKVIWF VQKGRDARKE E--------- ---------V 751 800 ENSTTRP00000004910/1-775 KTDDRMVKMD LGLLFLRVRK VDAGTYFCQT VEHSFVHTIR KITLEVVEEE BACU018989/1-733 KTDDRMVKMD LGLLFLRVRK VDAGTYFCQT VEHSFVHTIR KITLEVVEEE ENSP00000303212/1-775 KTDDRVVKMD LGLLFLRLHK SDAGTYFCQT VEHSFVHTVR KITLEVVEEE bmy_02511T0/1-868 KTDDRMVKMD LGLLFLRVRK VDAGTYFCQT VEHSFVHTIR KITLEVVEEE ENSBTAP00000019866/1-737 KTDDRVVKMD LGLLFLRVRR MDAGTYFCQT VEHSFVHTIR KITLEVVEEE 801 850 ENSTTRP00000004910/1-775 RVEEMFTKDY EEDGPHKTPC PVQSSIPHGT KPWYKEFLQL IGYSNFQRVE BACU018989/1-733 RVEEMFNKDY EEDGPHKMPC PAQSSTPHGT KPWYKEFLQL IGYSNFQRVE ENSP00000303212/1-775 KVEDMFNKDD EEDRHHRMPC PAQSSISQGA KPWYKEFLQL IGYSNFQRVE bmy_02511T0/1-868 RVEEMFNKDY EEDGPHKMPC PAQSSTPYGT KPWYKEFLQL IGYSNFQRVE ENSBTAP00000019866/1-737 RVEEMFNKDF EEDRLHKMPC PAQSIIPRGT KPWYKEFLQL IGYSNFQRVE 851 900 ENSTTRP00000004910/1-775 EYCEKVWCTD KKRKKLKMSP SKWKYANPQE KKLRPRAEHY RLPRHVLHS BACU018989/1-733 EYCEKVWCTD KKRRKLKMSP SKWKYANPQE RKLRPKAEHY RLPRHVLDS ENSP00000303212/1-775 EYCEKVWCTD RKRKKLKMSP SKWKYANPQE KKLRSKPEHY RLPRHTLDS bmy_02511T0/1-868 EYCEKVWCTD KKRRKLKMSP SKWKYANPQE KKLRPKAEHY RLPRHVLDS ENSBTAP00000019866/1-737 EYCEKVWCTD KKRKKLKMSP SKWKYANPQE KKLRPKTEHY RLPRHALDS