KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:09:38 2014 Check: 00 .. Name: BACU014622/1-615 Len: 698 Check: 5452 Weight: 1.00 Name: ENSTTRP00000005019/1-522 Len: 698 Check: 6488 Weight: 1.00 Name: bmy_20317T0/1-519 Len: 698 Check: 3816 Weight: 1.00 Name: ENSP00000311713/1-527 Len: 698 Check: 7055 Weight: 1.00 Name: ENSBTAP00000019872/1-527 Len: 698 Check: 6513 Weight: 1.00 // 1 50 BACU014622/1-615 MSEDSSALPW SINRDDYELQ EVIGSGATAV VQAASCAPKK EKVAIKRINL ENSTTRP00000005019/1-522 MSEDSSALPW SINRDDYELQ EVIGSGATAV VQAAYCAPKK EKVAIKRINL bmy_20317T0/1-519 ---------- ---------- ---------- ---------- ---------- ENSP00000311713/1-527 MSEDSSALPW SINRDDYELQ EVIGSGATAV VQAAYCAPKK EKVAIKRINL ENSBTAP00000019872/1-527 MTEDSSALPW SINRDDYELQ EVIGSGATAV VQAAYCAPKK EKVAIKRINL 51 100 BACU014622/1-615 EKCQTSMDEL LKEIQAMSQC HHPNIVSYYT SFVVKDELWL VMKLLSGGSV ENSTTRP00000005019/1-522 EKCQTSMDEL LKEIQAMSQC HHPNIVSYYT SFVVKDELWL VMKLLSGXXX bmy_20317T0/1-519 ---------- ---------- ---------- ---------- --------SV ENSP00000311713/1-527 EKCQTSMDEL LKEIQAMSQC HHPNIVSYYT SFVVKDELWL VMKLLSGGSV ENSBTAP00000019872/1-527 EKCQTSMDEL LKEIQAMSQC HHPNIVSYYT SFVVKDELWL VMKLLSGGSV 101 150 BACU014622/1-615 LDIIKHIVAK GEHKSGVLDE ATIATILREV LEGLEYLHKN GQIHRDVKAG ENSTTRP00000005019/1-522 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXDVKAG bmy_20317T0/1-519 LDIIKHIVAK GEHKSGVLDE ATIATILREV LEGLEYLHKN GQIHSYCTFN ENSP00000311713/1-527 LDIIKHIVAK GEHKSGVLDE STIATILREV LEGLEYLHKN GQIHRDVKAG ENSBTAP00000019872/1-527 LDIIKHIVAK GEHKNGVLDE ATIATILKEV LEGLEYLHKN GQIHRDVKAG 151 200 BACU014622/1-615 NILLGEDGSV QIADFGVSAF LATGGDITRN KVRKTFVGTP CWMAPEVMEQ ENSTTRP00000005019/1-522 NILLGEDGSV QIADFGVSAF LATGGDITRN KVRKTFVGTP CWMAPEVMEQ bmy_20317T0/1-519 ALLL-----Y SILDFGVSAF LATGGDITRN KVRKTFVGTP CWMAPEVMEQ ENSP00000311713/1-527 NILLGEDGSV QIADFGVSAF LATGGDITRN KVRKTFVGTP CWMAPEVMEQ ENSBTAP00000019872/1-527 NILLGEDGSV QIADFGVSAF LATGGDITRN KVRKTFVGTP CWMAPEVMEQ 201 250 BACU014622/1-615 VRGYDFKADI WSFGITAIEL ATGAAPYHKY PPMKVLMLTL QNDPPSLETG ENSTTRP00000005019/1-522 VRGYDFKADI WSFGITAIEL ATGAAPYHKY PPMKVLMLTL QNDPPSLETG bmy_20317T0/1-519 VRGYDFKADI WSFGITAIEL ATGAAPYHKY PPMKVLMLTL QNDPPSLETG ENSP00000311713/1-527 VRGYDFKADI WSFGITAIEL ATGAAPYHKY PPMKVLMLTL QNDPPSLETG ENSBTAP00000019872/1-527 VRGYDFKADI WSFGITAIEL ATGAAPYHKY PPMKVLMLTL QNDPPSLETG 251 300 BACU014622/1-615 VQDKEMLKKY GKSFRKMISL CLQKDPEKRP TAAELLRHKF FQKAKNKEFL ENSTTRP00000005019/1-522 VQDKEMLKKY GKSFRKMISL CLQKDPEKRP TAAE-LRHKF FQKAKNKEFL bmy_20317T0/1-519 VQDKEMLKKY GKSFRKMISL CLQKDPEKRP TAAELLRHKF FQKAKNKEFL ENSP00000311713/1-527 VQDKEMLKKY GKSFRKMISL CLQKDPEKRP TAAELLRHKF FQKAKNKEFL ENSBTAP00000019872/1-527 VQDKEMLKKY GKSFRKMISL CLQKDPEKRP TAAELLRHKF FQKAKNKEFL 301 350 BACU014622/1-615 QEKLLQRAPT ISERARKVRR VPGSSGRLHK TEDGGWEWSD DEFDEESEEG ENSTTRP00000005019/1-522 QEKILQRAPT ISERARKVRR VPGSSGRLHK TEDGGWEWSD DEFDEESEEG bmy_20317T0/1-519 QEKILQRAPT ISERARKVRR VPGSSGRLHK TEDGGWEWSD DEFDEESEEG ENSP00000311713/1-527 QEKTLQRAPT ISERAKKVRR VPGSSGRLHK TEDGGWEWSD DEFDEESEEG ENSBTAP00000019872/1-527 QEKILQRAPT ISERAKKVRR VPGSSGRLHK TEDGGWEWSD DEFDEESEEG 351 400 BACU014622/1-615 KAAISQLRLN L--------- ---------- ----VCGRKH PKETSQSV-- ENSTTRP00000005019/1-522 KAAISQLR-- ---------- ---------- -----SPRVK DSLTNSE--- bmy_20317T0/1-519 KAAISQLRKT LTRVTDELIM DQNEMELTCI STFRASPRVK DSLTNSEEEE ENSP00000311713/1-527 KAAISQLR-- ---------- ---------- -----SPRVK ESISNSE--- ENSBTAP00000019872/1-527 KAAISQLR-- ---------- ---------- -----SPRVK ESLTNSE--- 401 450 BACU014622/1-615 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005019/1-522 ---------- ---------- ---------- ---------- ---------- bmy_20317T0/1-519 IPELEIDVDE LLDIESADTR AARVTELLVD CYKPTEASVS GLLDKIRSTQ ENSP00000311713/1-527 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019872/1-527 ---------- ---------- ---------- ---------- ---------- 451 500 BACU014622/1-615 --------YL ARLLIGALTF GPLCDWIGRK ATILTLPRAP EPEKTGPTGN ENSTTRP00000005019/1-522 ---------- ---------L FSTTDPVG-- -TLLQVPEQI SAHLPQPAGQ bmy_20317T0/1-519 KLSTAQKNLS STVCVFLLQL FSTTDPVG-- -TLLQVPEQI SAHLPQPAGQ ENSP00000311713/1-527 ---------- ---------L FPTTDPVG-- -TLLQVPEQI SAHLPQPAGQ ENSBTAP00000019872/1-527 ---------- ---------L FSTTDPVG-- -TLLQVPEQI SAHLPQPAGP 501 550 BACU014622/1-615 ALDLFRHPQL RKVTLILFYV CYQGWPPHPN LLPRPVVSFS GVRASLKFGC ENSTTRP00000005019/1-522 MTA------- ---------- -----QPTQV SLPTPAEP-- --QA-LSSGA bmy_20317T0/1-519 MTA------- ---------- -----QPTQV SLPPPAEP-- --QA-LPSGA ENSP00000311713/1-527 IAT------- ---------- -----QPTQV SLPPTAEPAK TAQA-LSSGS ENSBTAP00000019872/1-527 TPA------- ---------- -----QPTQV SLPPTAEPAI AAQA-LSSGA 551 600 BACU014622/1-615 KRGLPVVGTV MALLGKVATA AGFTISYVYS AELFPTVIRE TGMGLLGILK ENSTTRP00000005019/1-522 GSQETKIPIS LVLRLRXXXX XXXXXXXXXT PG------RD TAEGV----- bmy_20317T0/1-519 GSQETKIPIS LVLRLRNSKK ELNDIRFEFT PG------RD TAEGV----- ENSP00000311713/1-527 GSQETKIPIS LVLRLRNSKK ELNDIRFEFT PG------RD TAEGV----- ENSBTAP00000019872/1-527 GSQETKIPIS LVLRLRNSKK ELNDIRFEFT PG------RD TAEGV----- 601 650 BACU014622/1-615 PLVILLGEYH TALPMLIYSS LPIGAGLLCA LLPETRGQTL KDTIDDLEQE ENSTTRP00000005019/1-522 ---------- --SQELISAG LVDGRDLVIV ------AANL QKIVEE---- bmy_20317T0/1-519 ---------- --SQELISAG LVDGRDLVIV ------AANL QKIVEE---- ENSP00000311713/1-527 ---------- --SQELISAG LVDGRDLVIV ------AANL QKIVEE---- ENSBTAP00000019872/1-527 ---------- --SQELISAG LVDGRDLVIV ------AANL QKIVEE---- 651 700 BACU014622/1-615 SCPHSLNAVP SEKDSEASGS TSGPGWPLEQ HVPLSVSPKP DQQQQRAA ENSTTRP00000005019/1-522 --PQSNRSVT FKLASGVEGS DIPDDGKLIG FAQLSIS--- -------- bmy_20317T0/1-519 --PQSNRSVT FKLASGVEGS DIPDDGKLIG FAQLSIS--- -------- ENSP00000311713/1-527 --PQSNRSVT FKLASGVEGS DIPDDGKLIG FAQLSIS--- -------- ENSBTAP00000019872/1-527 --PQSNRSVT FKLASGVEGS DIPDDGKLIG FAQLSIS--- --------