KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:09:39 2014 Check: 00 .. Name: ENSP00000328875/1-914 Len: 960 Check: 3895 Weight: 1.00 Name: ENSBTAP00000019878/1-913 Len: 960 Check: 7156 Weight: 1.00 Name: ENSTTRP00000008273/1-903 Len: 960 Check: 7641 Weight: 1.00 Name: bmy_17605T0/1-912 Len: 960 Check: 5406 Weight: 1.00 Name: BACU019494/1-913 Len: 960 Check: 2605 Weight: 1.00 // 1 50 ENSP00000328875/1-914 MSQSQNAIFT SPTGEENLMN SNHRDSESIT D--------- ---------- ENSBTAP00000019878/1-913 MSQSQDATFT APMGEENLMN INHRDSESIT D--------- ---------- ENSTTRP00000008273/1-903 MSQSQNATST SPMGEENLMN INHRDSESIT D--------- ---------- bmy_17605T0/1-912 MSQSQNATST SPMGEENLMN INHRDSESIT EVLNDGQHLE QEARSKHMKV BACU019494/1-913 MSQSQNATST SPMGEENLMN INHRDSESIT D--------- ---------- 51 100 ENSP00000328875/1-914 ---------V CSNEDLPEVE LVSLLEEQLP QYRLKVDTLF LYENQDWTQS ENSBTAP00000019878/1-913 ---------V CSNEDVPEVE LVSLLEEQLP QYKLRVDSLF LYENQDWTQS ENSTTRP00000008273/1-903 ---------V CSNEDIPEVE LVSLLEEQLP QYKLRVDSLF LYENQDWTQS bmy_17605T0/1-912 EKPKRVQRNV CSNEDLPEVE LVSLLEEQLP QYKLRVDSLF LYENQDWTQS BACU019494/1-913 ---------V CSNEDLPEVE LVSLLEEQLP QYKLRVDSLF LYENQDWTQS 101 150 ENSP00000328875/1-914 PHQRQHASDA LSPVLAEETF RYMILGTDRV EQMTKTYNDI DMVTHLLAER ENSBTAP00000019878/1-913 PHQQQHASDT LSPVLAEETF RYMILGTDRV EQMTKTYNDI DMVTHLLAER ENSTTRP00000008273/1-903 PRQQRHGSDA LSPVLAEETF RYMILGTDRV EQMTKTYNDI DMVTHLLAER bmy_17605T0/1-912 PRQQQHGSDA LSPVLAEETF RYMILGTDRV EQMTKTYNDI DMVTHLLAER BACU019494/1-913 ARQQQHGSDA LSPVLAEETF RYMILGTDRV EQMTRTYNDI DMVTHLLAER 151 200 ENSP00000328875/1-914 DRDLELAARI GQALLKRNHV LSEQNESLEE QLGQAFDQVN QLQHELCKKD ENSBTAP00000019878/1-913 DRDLELAARI GQALLKRNHA LSEQNETLEE QLGQAFDQVN QLQHELSKKD ENSTTRP00000008273/1-903 DRDLELAARI GQALLKRNHA LSEHNEALEE QLGQAFDQVN QLQHELSKKD bmy_17605T0/1-912 DRDLELAARI GQALLKRNHA LSEHNEALEE QLGQAFDQVN QLQHELSKKD BACU019494/1-913 DRDLELAARI GQALLKRNHA LSEHNEALEE QLGQAFDQVN QLQHELSKKD 201 250 ENSP00000328875/1-914 ELLRIVSIAS EESETDSSCS TPLRFNESFS LSQGLLQLEM LQEKLKELEE ENSBTAP00000019878/1-913 ELLRIVSIAS EESETDSSCS TPLRFNESFS LSQGLLQLDM LQEKLKELEE ENSTTRP00000008273/1-903 ELLRVVSIAS EESETDSSCS TPLRFNESFS LSQGLLQLDM LQEKLKELER bmy_17605T0/1-912 ELLRIVSIAS EESETDSSCS TPLRFNDSFS LSQGLLQLDM LQEKLKELEE BACU019494/1-913 ELLRIVSIAS EESETDSSCS TPLRFNESFS LSQGLLQLDM LQEKLKELEE 251 300 ENSP00000328875/1-914 ENMALRSKAC HIKTETVTYE EKEQQLVSDC VKELRETNAQ MSRMTEELSG ENSBTAP00000019878/1-913 ENMLLRSKAC HIKTETITYE EKEQQLVSDC VKELRETNAQ MSRMTEELSG ENSTTRP00000008273/1-903 D-MVLRS-AC HIKTETITYE EKEQQLVSDC VKELRETNAQ MSRMTEELSG bmy_17605T0/1-912 ENMVLRSKAC HIKTETITYE EKEQQ----- ---------- ---------- BACU019494/1-913 ENMVLRSKAC HIKTETITYE EKEQQLVSDC VKELRETNAQ MSRMTEELSG 301 350 ENSP00000328875/1-914 KSDELIRYQE ELSSLLSQIV DLQHKLKE-H VIEKEELKLH LQASKDAQRQ ENSBTAP00000019878/1-913 KSDELIRYQE EISSLLSQIV DLQHKLKE-H VIEKEELRLH LQASKDAQRQ ENSTTRP00000008273/1-903 KSDELIRYQE EISSLLSQIV DLQHKLKE-H VIEKEELRLH LQASKDAQRQ bmy_17605T0/1-912 ---------- ---------- -LPFMLKEKQ VIEKEELRLH LQASKDAQRQ BACU019494/1-913 KSDELIRYQE EISSLLSQIV DLQHKLKE-V VIEKEELRLH LQASKDAQRQ 351 400 ENSP00000328875/1-914 LTMELHELQD RNMECLGMLH ESQEEIKELR SRSGPTAHLY FSQSYGAFTG ENSBTAP00000019878/1-913 LTMELHELQD RNMECLGMLH ESQEEIKELR SRSSPAAHLY FSQPYGVFSG ENSTTRP00000008273/1-903 LTMELHELQD RNMECLGMLH ESQEEIKELR NRSGPAAHLY FAQPYGVFSG bmy_17605T0/1-912 LTMELHELQD RNMECLGMLH ESQEEIKELR NRSGPAAHLY FSQPYGVFSG BACU019494/1-913 LTMELHELQD RNMECLGMLH ESQEEIKELR NRSGPAAHLY FSQPYGVFSG 401 450 ENSP00000328875/1-914 ESLAAEIEGT MRKKLSLDEE SSLFKQ---- ---------- --KAQQKRVF ENSBTAP00000019878/1-913 ESLAAEIEGT MRKKLSLDEE SSLFKQ---- ---------- --KAQQKRVF ENSTTRP00000008273/1-903 ESLAAEIEGT MRKKLSLDEE SSLFKQ---- ---------- --KAQQKRVF bmy_17605T0/1-912 ESLAAEIEGT MRKKLSLDEE SSLFKQNTPV VGSGNNEHVS FDRAQQKRVF BACU019494/1-913 ESLAAEIEGT MRKKLSLDEE SSLFKQ---- ---------- --KAQQKRVF 451 500 ENSP00000328875/1-914 DTVRIANDTR GRSISFPALL PIPGSNRSSV IMTAKPFESG LQQTEDKSLL ENSBTAP00000019878/1-913 DTVKAANDTR GRSVPFPILL PIPGSNRSSV IMTAKPFESG LEPTEGKTT- ENSTTRP00000008273/1-903 DTVKVANDTR GCSVPFPALL PIPGSNRSSV IMTAKPFESG LQQTEDKTI- bmy_17605T0/1-912 DTVKVANDTR GRSVPFPALL PIPGSNRSSV IMTAKPFESG LQQTEDKTI- BACU019494/1-913 DTVKVANDTR GRSVPFPALL PIPGSNRSSV IMTAKPFESG LQQTEDKTI- 501 550 ENSP00000328875/1-914 NQGSSSEEVA GSSQKMGQPG PSGDSDLATA LHRLSLRRQN YLSEKQFFAE ENSBTAP00000019878/1-913 -QKSNLEEDP GNIQKADQPG PSTESDLATA LHRLSLRRQN YLSEKQFFAE ENSTTRP00000008273/1-903 -QKSNLEEDP GNVQNVCQPG HSEESDLATA LHRLSLRRQN YLSEKQFFAE bmy_17605T0/1-912 -QKSNLEEDP GNVQKFCQPE CSAESDLATA LHRLSLRRQN YLSEKQFFAE BACU019494/1-913 -QKSNLEEDP GNVQKVCQPE CSAESDLATA LHRLSLRRQN YLSEKQFFAE 551 600 ENSP00000328875/1-914 EWQRKIQVLA DQKEGVSGCV TPTESLASLC TTQSEITDLS SASCLRGFMP ENSBTAP00000019878/1-913 EWQRKIQVLA DQKEEGSGCG TPTESLASLY TDQSEITDLS SASCLRGFMP ENSTTRP00000008273/1-903 EWQRKIQVLA GQKEGGSDCG IPTESLASLC TDQSEITDLS SASCLRGFMP bmy_17605T0/1-912 EWQRKIQALA GQKEGGSDCG FPTESLASIC TDQSEITDLS SASCLRGFMP BACU019494/1-913 EWQRKIQALA GQKEGDSDCG IPTESLASLC TDQSEITDLS SASCLRGFMP 601 650 ENSP00000328875/1-914 EKLQIVKPLE GSQTLYHWQQ LAQPNLGTIL DPRPGVITKG FTQLPGDAIY ENSBTAP00000019878/1-913 EKLQIVKPLE GSQTLHQWQQ LAQPNLGTIL DPRPGVITKG FTQLPKDAIY ENSTTRP00000008273/1-903 EKLQIVKPLE GSQTLHQWQQ LAQPNLGTIL DPRPGVITKG FTQLPKDAIY bmy_17605T0/1-912 EKLQIVKPLE GSQTLHQWQQ LAQPNLGTIL DPRPGVITKG FTQLPKDAIY BACU019494/1-913 EKLQIVKPLE GSQTLHQWQQ LAQPNLGTIL DPRPGVITKG FTQLPKDAIY 651 700 ENSP00000328875/1-914 HISDLEEDEE EGITFQVQQP LEVEEKLSTS KPVTGIFLPP ITSAGGPVTV ENSBTAP00000019878/1-913 HLSDLEEDEE EGITFQVQQP LQVEQKTSIS QPVTGIFLPP MTSAGGPVTV ENSTTRP00000008273/1-903 HLSDLEEDER --ITF--VQP LQ--EQKSIS QPVT-IFL-P MTSXXXXXXX bmy_17605T0/1-912 HLSDLEEDEE EGITFQVQQP LQVEQKPSIS QPVTGIFLPP MTSAGGPVTV BACU019494/1-913 HLSDLEEDEE EGITFQVQQP LQVEQKPSVS QPVTGIFLPP MTSAGGPVTV 701 750 ENSP00000328875/1-914 ATANPGKCLS CTNSTFTFTT CRILHPSDIT QVTPSSGFPS LSCGSSGSSS ENSBTAP00000019878/1-913 ATSNPGKCLS CTNSTFTFTT CRILHPSDIT QVTPSSGFPS LSCASSGSSS ENSTTRP00000008273/1-903 ATSNPGKCLS CTNSTFTFTT CRILHPSDIT QVTPSSDFTS LSCGSSGSSS bmy_17605T0/1-912 ATSNPGKCQS CTNSTFTFTT CRILHPSDIT QVTPSSGFPS LSCGSSGSSS BACU019494/1-913 ATSNPGKCLS CTNSTFTFTT CRILHPSDIT QVTPSSGFPS LSCGSSGSSS 751 800 ENSP00000328875/1-914 SNTAVNSPAL SYRLSIGESI TNRRDSTTTF SSTMSLAKLL QERGISAKVY ENSBTAP00000019878/1-913 SNTAMNSPAV SYRLSVGESI TNRRDSTITF SSTVSLAKLL QERGISAKVY ENSTTRP00000008273/1-903 SNTAVNSPAV SYRLSIGESI TNRRDSTITF SGTMSLAELL QKRGISAKAY bmy_17605T0/1-912 SNTAVNSPAM SYRLSIGESI TNRRDSTITF SGTMSLAKLL QKQGISAKAY BACU019494/1-913 SNTAVNSPAM SYRLSIGESI TNRRDSTITF SGTMSLAKLL QKQGISAKAY 801 850 ENSP00000328875/1-914 HSPISENP-L QPLPKSLAIP STPPNSPSHS PCPSPLPFEP RVHLSENFLA ENSBTAP00000019878/1-913 HSPISENPLL QPLPRGLSTP SIPPNSPSHS PCPSPLPMEP RVHLSENFLA ENSTTRP00000008273/1-903 HSPVSEDPLL QPLPRGLAIP STPPNSPSHS PCPSPLPVEP RVHLSENFLA bmy_17605T0/1-912 HSPVSENSLL QPLPRGLAIP STPPNSPSHS PCPSPLPVEP RVHLSENFLA BACU019494/1-913 HSPVSENPLL QPLPRGLAIP STPPNSPSHS PCPSPLPVEP RVHLSENFLA 851 900 ENSP00000328875/1-914 SRPAETFLQE MYGLRPSRNP PDVGQLKMNL VDRLKRLGIA RVVKNPGAQE ENSBTAP00000019878/1-913 SRPAETFLQE MYGLRPSRNP PDVGQLKMNL VDRLKRLGIA RVIKTPEAQA ENSTTRP00000008273/1-903 SRPAETFLQE MYGLRPSRNP SDVGQLKMNL VDRLKRLGIA RVIKTPAAQK bmy_17605T0/1-912 SRPAETFLQE MYGLRPSRNP PDVGQLKMNL VDRLKRLGIA RVIKTPAAQE BACU019494/1-913 SRPAETFLQE MYGLRPSRNP PDVGQLKMNL VDRLKRLGIA RVIKTPAAQE 901 950 ENSP00000328875/1-914 NGRCQEAEIG PQKPDSAVYL NSGSSLLGGL RRNQSLPVIM GSFAAPVCTS ENSBTAP00000019878/1-913 NGRSQKAENG LQRPNSAVYL NSGSNLLSGL RRNQSLPVML GSFSTPVCTS ENSTTRP00000008273/1-903 NGRSQEAENG LERPNSAVYL NSGSNLLSGL RRNQSLPVIM GSFGTPVCTS bmy_17605T0/1-912 NGRSQEAENG LQRPNSAVYL NSGSNLLSGL RRNQSLPVMM GSFGTPVCTS BACU019494/1-913 NGRSQEAENG LQRPNSAVYL NSGSNLLSGL RRNQSLPVMM GSFGTPVCTS 951 1000 ENSP00000328875/1-914 SPKMGVLKED ENSBTAP00000019878/1-913 SPKMDILKED ENSTTRP00000008273/1-903 SPKMDILKED bmy_17605T0/1-912 SPKMDILKED BACU019494/1-913 SPKMDILKED