KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:09:40 2014 Check: 00 .. Name: ENSP00000366953/1-559 Len: 576 Check: 4722 Weight: 1.00 Name: ENSTTRP00000011173/1-477 Len: 576 Check: 6228 Weight: 1.00 Name: ENSBTAP00000019879/1-564 Len: 576 Check: 3575 Weight: 1.00 Name: bmy_02841T0/1-288 Len: 576 Check: 7311 Weight: 1.00 Name: BACU017552/1-564 Len: 576 Check: 2171 Weight: 1.00 // 1 50 ENSP00000366953/1-559 MFPFGPHSPG GDGSAGAGAE EPTPHEGQAA ATG----PPS PLHPGADATH ENSTTRP00000011173/1-477 ---------- ---------- ---------- ---------- ALKP------ ENSBTAP00000019879/1-564 MFPLGLRCPG GNRAAGAGAE EPASYRREAA AAGPLPSPPS PLQPRADAAP bmy_02841T0/1-288 ---------- ---------- ---------- ---------- ---------- BACU017552/1-564 MFPFGPGSPG GDRAAGAGAE EPAPHARQGG AAGPLPSPPP SLQPGADAAP 51 100 ENSP00000366953/1-559 PPPPARSPRR PGAPSLSPAP RSGELGLPGA PESSTASAPG EPSPPSPPCR ENSTTRP00000011173/1-477 ---------- ---------- ---------- ----SASAQE EQSPPSPPRR ENSBTAP00000019879/1-564 PPSPGGSPRS PCAPSEPPGG RAREFGLPGA PESSAASAQG DPSPPSPPRR bmy_02841T0/1-288 ---------- ---------- ---------- ---------- ---------- BACU017552/1-564 PPSPCGSPRR PCAPSQPQAG RAGELRPPGA LESSAASAQG EQSPPTPPRR 101 150 ENSP00000366953/1-559 RPGPDCRAKS RGRHGLGAGL GGPGARLFGW LKERSLGRGL FVDPARDNFR ENSTTRP00000011173/1-477 QPGADCRAGS RGRHCLSARL GGPGAQLFGW LRERSLGRGL FVDPARDNFR ENSBTAP00000019879/1-564 PPGPDCRAGS RGQPCLKARL GGPGARLFGW LRERSLGRGL FVDPARDNFR bmy_02841T0/1-288 ---------- ---------- ---------- ---------- ---------- BACU017552/1-564 QPGPDCRAGS RGRHCLSARL GGPGARLFGW LRERSLGRGL FVDPARDNFR 151 200 ENSP00000366953/1-559 TMTSLYGSIH PADSVYLSTR THGAVFNLEY SPDGSVLTVA CEQTEVLLFD ENSTTRP00000011173/1-477 TMTNLYGSIH PADSVYLSTR THGAVFNLEY SPDGSVLTVA CEQTEVLLFD ENSBTAP00000019879/1-564 TMTNLYGSIH PADSVYLSTR THGAVFNLEY SPDGSVLTVA CEQTEVLLFD bmy_02841T0/1-288 ---------- ---------- ---------- ---------- ---------- BACU017552/1-564 TMTNLYGSIH PADSVYLSTR THGAVFNLEY STDGSVLTVA CEQTEVLLFD 201 250 ENSP00000366953/1-559 PISSKHIKTL SEAHEDCVNN IRFLDNRLFA TCSDDTTIAL WDLRKLNTKV ENSTTRP00000011173/1-477 PISSKHIKTL SEAHEDCVNN IRFLDNRLFA TCSDDTTIAL WDLRKLNSKV ENSBTAP00000019879/1-564 PISSKHIKTL SEAHEDCVNN IRFLDNRLFA TCSDDTTIAL WDLRKLNTKV bmy_02841T0/1-288 ---------- ---------- --FLDNRLFA TCSDDTTIAL WDLRKLNSKV BACU017552/1-564 PISSKHIKTL SEAHEDCVNN IRFLDNRLFA TCSDDTTIAL WDLRKLNSKV 251 300 ENSP00000366953/1-559 CTLHGHTSWV KNIEYDTNTR LLVTSGFDGN VIIWDTNRYT EDGCPHKKFF ENSTTRP00000011173/1-477 CTLHGHTSWV KNIEYDTNTR LLVTSGFDGN VIIWDTNRCT EDGCPHKKFF ENSBTAP00000019879/1-564 CTLHGHTSWV KNIEYDTNTR LLVTSGFDGN VIIWDTNRCT EDGCPHKKFF bmy_02841T0/1-288 CTLHGHTSWV KNIEYDTNTR LLVTSGFDGN VIIWDTNRCT EDGCPHKKFF BACU017552/1-564 CTLHGHTSWV KNIEYDTNTR LLVTSGFDGN VIIWDTNRCT EDGCPHKKFF 301 350 ENSP00000366953/1-559 HTRFLMRMRL TPDCSKMLIS TSSGYLLILH DLDLTKSLEV GSYPILRARR ENSTTRP00000011173/1-477 HTRFLMRMRL TPDC---ILS SINLFL---- NKDRAKSLEV GSYPILRARR ENSBTAP00000019879/1-564 HTRFLMRMRL TPDCSKMLIS TSSGYLLILH DLDLTKSLEV GSYPILRARR bmy_02841T0/1-288 HTRFLMRMRL TPDCSKMLIS TSSGYLLILH DLDLTKSLEV GSYPILRARR BACU017552/1-564 HTRFLMRMRL TPDCSKMLIS TSSGYLLILH DLDLTKSLEV GSYPILRARR 351 400 ENSP00000366953/1-559 TTSSSDLTTS SSSSGPRVSG SPCHHSDSN- SSEKHMSRAS QREGVSPRNS ENSTTRP00000011173/1-477 TTSSSDLTTL SSSSGPRVSG SPSHHSDSNS SSEKHMSRAS QREGISPRNS ENSBTAP00000019879/1-564 TTSSSDLTTL SSSSGPRVSG SPCHHSDSNS SSEKHMSRTS QREGISPRNS bmy_02841T0/1-288 TTSSSDLTTL SSSSGPRVSG SPSHHSDSSS SSEKHMSRAS QREGISPRNS BACU017552/1-564 TTSSSDLTTL SSSSGPRVSG SPSHHSDSNS SSEKHMSRAS QREGISPRNS 401 450 ENSP00000366953/1-559 LEVVTPEVLG ESDHGNCITS LQLHPKGWAT LLRCSSNSDD EECTCVYEFQ ENSTTRP00000011173/1-477 LEVLTPEVPG ERDRGNCITS LQLHPKGWAT LLRCSSNTDD QEWTCVYEFQ ENSBTAP00000019879/1-564 LEVLTPEVPG ERDRGNCITS LQLHPKGWAT LLRCSSNTDD QEWTCVYEFQ bmy_02841T0/1-288 LEVLTPEVPG ERDRGNCITS LQLHPKGWAT LLRCSSNTDD QE-------- BACU017552/1-564 LEVLTPEVPG ERDRGNCITS LQLHPKGWAT LLRCSSNTDD QEWTCVYEFQ 451 500 ENSP00000366953/1-559 EGAPVRPVSP RCSLRLTHYI EEANVGRGYI KELCFSPDGR MISSPHGYGI ENSTTRP00000011173/1-477 EGAPVRPVSP RCSLRLTHYI EEANVGRGYI KELCFSPDGR MISSPHGYGI ENSBTAP00000019879/1-564 EGAPVRPVAP RCSLRLTHYI EEANVGRGYI KELCFSPDGR MISSPHGYGI bmy_02841T0/1-288 ---------- ---------- ---------- ---------- ---------- BACU017552/1-564 EGAPVRPVSP RCSLRLTHYI EEANVGRGYI KELCFSPDGR MISSPHGYGI 501 550 ENSP00000366953/1-559 RLLGFDKQCS ELVDCLPKEA SPLRVIRSLY SHNDVVLTTK FSPTHCQIAS ENSTTRP00000011173/1-477 RLLGFDKQCS ELIDCLPKEA SPLRVIRSLY SHNDVVLTTK FSPTHCQIAS ENSBTAP00000019879/1-564 RLLGFDKQCS ELIDCLPKEA SPLRVIRSLY SHNDVVLTTK FSPTHCQIAS bmy_02841T0/1-288 --------CS ELIDCLPKEA SPLRVIRSLY SHNDVVLTTK FSPTHCQIAS BACU017552/1-564 RLLGFDKQCS ELIDCLPKEA SPLRVIRSLY SHNDVVLTTK FSPTHCQIAS 551 600 ENSP00000366953/1-559 GCLSGRVSLY ---------- --QPKF ENSTTRP00000011173/1-477 GCLSGRVSLY ---------- --QPKF ENSBTAP00000019879/1-564 GCLSGRVSLY ---------- --QPKF bmy_02841T0/1-288 GCLSGRVSLL FESQRMTGGG KIKPKE BACU017552/1-564 GCLSGRVSLY ---------- --QPKF