KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:09:44 2014 Check: 00 .. Name: ENSP00000300961/1-331 Len: 347 Check: 7984 Weight: 1.00 Name: ENSBTAP00000019913/1-337 Len: 347 Check: 3288 Weight: 1.00 Name: bmy_06701T0/1-191 Len: 347 Check: 8942 Weight: 1.00 Name: BACU006493/1-330 Len: 347 Check: 6645 Weight: 1.00 Name: ENSTTRP00000009658/1-182 Len: 347 Check: 2357 Weight: 1.00 // 1 50 ENSP00000300961/1-331 MSMTTRAWEE LDGGLGSCQA LEDHSALAE- ----TQEDRA SATPRLADSG ENSBTAP00000019913/1-337 --MATRAMEE LDGGLGSCQV DEDLSALADP CPSRPQEDSV RATSRLADSS bmy_06701T0/1-191 ---------- ---------- ---------- ---------- -------MTC BACU006493/1-330 --MTTRALEE LDGGLGSCQV EEDLSALPDP CPGRPREDRA QVTSRLADSS ENSTTRP00000009658/1-182 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000300961/1-331 SVPHDSQ--V AEGP---SVD TRPKKMEKEP AARGTPGTGK ERLKAGASPR ENSBTAP00000019913/1-337 SRSHDSQERV TEGSPTGSVD TKPKKMEKEP VSKVTSGAGK EKLKAGATPR bmy_06701T0/1-191 YSPQDSQEPA AEGSPAGGVD AWPKKTEKDP VAKVASGPGK ERLKAGASGF BACU006493/1-330 SWPRDSQEPA AEGSPAGGVD AWPKKTEKEP VAKVASGPGK ERLKAGESGF ENSTTRP00000009658/1-182 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000300961/1-331 SVPARKKAQT APPLQPPPPP PALSEELPWG DLSLNKCLVL ASLVALLGSA ENSBTAP00000019913/1-337 S-PARKKAQT ASP-PQPPPP PALSDELPWG DLTLNKCLVL ASLVALLGSA bmy_06701T0/1-191 L-GGR----- ---------- ---------- ---------- ---------- BACU006493/1-330 P-GGR----- GEP-PPPPPP PVLSEELLWG HLTLNKCLVL ASLVALLGSA ENSTTRP00000009658/1-182 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000300961/1-331 FQLCRDAVPG EAALQARVPE PWVPPSSAPR EPSSPLPKFE AQAPPSAPPA ENSBTAP00000019913/1-337 FQLCREAVAR DVEAPAPVPE SWASSSSSPK GPASTLPKPE AWAPSVRQPE bmy_06701T0/1-191 ----GENILG -ISVKRPIPQ GLVLR----- ---------- ---------- BACU006493/1-330 FQLCREAVAG EAEAPAPVPE PWVPPSSALK EPASPLPKSV AWAPPLGPPE ENSTTRP00000009658/1-182 ------AVAG EAEAPAPVPE PWVPPSSSLK EPASPLPKSV AWAPPLGSLE 201 250 ENSP00000300961/1-331 PRAEAEVRPK IPGSREAAEN DEEEPGEATG EAVREDRVTL ADRGPKE--- ENSBTAP00000019913/1-337 PPSKLEERVQ IPRSEEAAEK DEWE----SE EAADGEHVPL AGRGPKE-KL bmy_06701T0/1-191 PRAAQPGRAE L---SLATGR PNAA----CA QPA------L ASAGPRS--- BACU006493/1-330 PSAKVEERAA VPRSSGAAGK DKGE----SE EAAEEERVPL ANRGPKERRK ENSTTRP00000009658/1-182 PPAKVEERAA VPRSSGAAGK DKGE----SE ETAEEERVPL ADRGPKERRK 251 300 ENSP00000300961/1-331 ---RPRREGK PRKEKPRKEE RPKKERPRKE ERPRAAREPR EALPQRWESR ENSBTAP00000019913/1-337 KKEKPRKE-R PGKEKPQKEE RPRKEKPRKE EKPRGAREPQ GALPRRWEAR bmy_06701T0/1-191 ----PARK-K AQAAPPSQPP PPP------- --PVLSEE-- -LLWGHLTLN BACU006493/1-330 KEEKPRKE-R PRKERPQKEE RPRRERPRKE ERPRAAGE-- -ALPRRWEAR ENSTTRP00000009658/1-182 KAERLRKE-R PRKERPQK-E RPRRERPRKE ERPRAAGE-- -ALHRRWEAR 301 350 ENSP00000300961/1-331 EGGHRPWARD SRDAEPRKKQ AWVSPRRPDE EQRPGSRQKL RAGKGRD ENSBTAP00000019913/1-337 EGGHRPWGRD SGAPEDRKRQ AWVSLRRPDE EDRPLGRQKR RAGKGRD bmy_06701T0/1-191 KCLVLASLVA LLGSAFQLCR GEPAPPHVVT PSQKRGQPRG RVCAIPL BACU006493/1-330 EGGHRAWAVE SGDPEHRKRQ AWASPRRPNE EDRPPGRQKH HAGKGRD ENSTTRP00000009658/1-182 EGGHRAWAGE SRDPEHRKRQ AWASPRRPDE EDRPPGRQKH HAGKGRD