KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:09:49 2014 Check: 00 .. Name: ENSTTRP00000009372/1-1155 Len: 1176 Check: 5654 Weight: 1.00 Name: ENSP00000291495/1-1156 Len: 1176 Check: 9091 Weight: 1.00 Name: ENSBTAP00000019927/1-1157 Len: 1176 Check: 3264 Weight: 1.00 Name: bmy_02663T0/1-815 Len: 1176 Check: 9366 Weight: 1.00 Name: BACU016626/1-1148 Len: 1176 Check: 8899 Weight: 1.00 // 1 50 ENSTTRP00000009372/1-1155 MASLQILLCL CVAAAHLAGT RGTTTPEEPM VTAWGLEGSL LHPGQPSPAL ENSP00000291495/1-1156 MASLLPLLCL CVVAAHLAGA RDATPTEEPM ATALGLERRS VYTGQPSPAL ENSBTAP00000019927/1-1157 MSSLPTLLCL CVAAAHLAGA RGTPDAEEPT VTAWGLEGSS LRPGQPSPAL bmy_02663T0/1-815 ---------- ---------- ---------- ---------- ---------- BACU016626/1-1148 MASLQILLCL CVAAAHLAGT RGTTTPEEPM VTAWGLEGSL LHPGQPSPAL 51 100 ENSTTRP00000009372/1-1155 EDWEEASEWT SWFNVDHPGG DGDFESLAAI RFYYGPARVC PRPLALEART ENSP00000291495/1-1156 EDWEEASEWT SWFNVDHPGG DGDFESLAAI RFYYGPARVC PRPLALEART ENSBTAP00000019927/1-1157 EDWEEASEWT SWFNVDHPGG DGDFESLAAI RFYYGPARVC PRPLALEART bmy_02663T0/1-815 ---------- ---------- ---------- ---------- ---------- BACU016626/1-1148 EDWEEASEWT SWFNVDHPGG DGDFESLAAI RFYYGPARVC PRPLALEART 101 150 ENSTTRP00000009372/1-1155 TDWALPSDVG ERVHLNPTRG FWCLNREQPR GRRCSNYHVR FRCPHEATWG ENSP00000291495/1-1156 TDWALPSAVG ERVHLNPTRG FWCLNREQPR GRRCSNYHVR FRCPLEASWG ENSBTAP00000019927/1-1157 TDWALPSDVG ERVHLNPTRG FWCLNREQPR GRRCSNYHVR FRCPLEATWG bmy_02663T0/1-815 ---------- ---------- ---------- ---------- ---------- BACU016626/1-1148 TDWALPSDVG ERVHLNPTRG FWCLNREQPR GRRCSNYHVR FRCPLEVTWG 151 200 ENSTTRP00000009372/1-1155 AWGPWGPCSG SCGPGRRLRR RRCPSPAADA CPGRTLEAQN CVRPTCPGCG ENSP00000291495/1-1156 AWGPWGPCSG SCGPGRRLRR RHCPSPAGDA CPGRPLEAQK CVRPRCPGCS ENSBTAP00000019927/1-1157 SWGPWGPCSG SCGPGRRLRR RRCSSPAGDA CPGRPSEAQK CVRPRCPGCG bmy_02663T0/1-815 ---------- ---------- ---------- ---------- ---------- BACU016626/1-1148 AWGPWGPCSG SCGPGRRLRR RRCPSPAADA CPGRPLEAQK CVRPPCP--- 201 250 ENSTTRP00000009372/1-1155 PNTCGCTDHI LLGSVVTPSG CPLPGARVSL RDWPGTMATS HAHGTFWVPG ENSP00000291495/1-1156 LDTCECPDHI LLGSVVTPSG QPLLGARVSL RDQPGTVATS DAHGTFRVPG ENSBTAP00000019927/1-1157 PSTCGCPDHI LLGSVVTPSG RPLPGARVSL RDWPGTIATS DAHGTFRMPG bmy_02663T0/1-815 ---------- ---------- ---------- ------MATS HAHGTFWVPG BACU016626/1-1148 ---------- ---------- -----ARVSL RDWPGTMATS HAHGTFWVPG 251 300 ENSTTRP00000009372/1-1155 VCASSRANVS ARMDGFSAGM AQAQANSSIS AVVSVVLNKL EKPYLVKHPE ENSP00000291495/1-1156 VCADSRANIR AQMDGFSAGE AQAQANGSIS -VVTIILDKL EKPYLVKHPE ENSBTAP00000019927/1-1157 VCASSQANVS AQMDGFSAGM TQAQANSSMS SVATVVLNKL EKPYLVKHPE bmy_02663T0/1-815 VCASSRANVS GQMDGFSAGM AQAQANSSNS AVVTVVLNKL EKPYLVKHPE BACU016626/1-1148 VCASSRANVS AQMDGFPAGM AQAQAKSSNS AVVTVVLNKL EKPYLVKHPE 301 350 ENSTTRP00000009372/1-1155 SRVREAGQNV TFCCKALGTP MPKKYSWFHN GTLLDRRTHR YGTHLELHGL ENSP00000291495/1-1156 SRVREAGQNV TFCCKASGTP MPKKYSWFHN GTLLDRRAHG YGAHLELRGL ENSBTAP00000019927/1-1157 SQVREAGQNV TFCCKASGTP MPKKYSWFHN GTLLDRRTHR YGAHLELHGL bmy_02663T0/1-815 SRVREAGQNV TFCCKALGTP MPKKYSWFHN GTLLDRRKHR YRTHLELHGL BACU016626/1-1148 SRVREAGQNV TFCCKALGTP MPKKYSWFHN GTLLDRRKHR YRTHLELHGL 351 400 ENSTTRP00000009372/1-1155 HPDQAGTYHC KAWNDAGAVR SGTAQLTVLA PGQPACDPQP REHLIKLPDD ENSP00000291495/1-1156 RPDQAGIYHC KAWNEAGAVR SGTARLTVLA PGQPACDPRP REYLIKLPED ENSBTAP00000019927/1-1157 RPDQAGTYHC KAWNDAGAVR SGAARLTVLA PGQPACDPRP REHLIKLPDD bmy_02663T0/1-815 HPDQAGTYHC KAWNDAGAVR SGTAQLTVLA PGQPACDPQP REHLIKLPDD BACU016626/1-1148 HPDQAGTYHC KAWNDVGAVR SGTAQLTVLA PGQPACDPQP REHLIKLPDD 401 450 ENSTTRP00000009372/1-1155 CGQPGSGPIY LDVGLCPDTP CPSPAGSRPR CGDAGSRCCS VHRLESRKIH ENSP00000291495/1-1156 CGQPGSGPAY LDVGLCPDTR CPSLAGSSPR CGDASSRCCS VRRLERREIH ENSBTAP00000019927/1-1157 CGQPGRGPTY LDVGLCPDTL CPSPAGSSPR CGDAGSRCCS VRRLESRKIH bmy_02663T0/1-815 CGQPGSGPIY LDVGLCPDTL CPSPAGSSPR CGDAGSRCCS VHRLESRKIH BACU016626/1-1148 CGQPGSGPIY LDVGLCPDTL CPSPAGSSPR CGDAGSRCCS VHRLESRKIH 451 500 ENSTTRP00000009372/1-1155 CSGYILPVKI VAECGCRKCL PPRGLIRGRV VAAESREPLR FARILLGREP ENSP00000291495/1-1156 CPGYVLPVKV VAECGCQKCL PPRGLVRGRV VAADSGEPLR FARILLGQEP ENSBTAP00000019927/1-1157 CSGYTLPVKV VAECGCQKCL PLRGLIRGRV VAADSREPLR FARILLGREP bmy_02663T0/1-815 CSGYILPVKI VAECGCQKCL PLRGLIRGRV VAADSREPLR FARILLGREP BACU016626/1-1148 CSGYILPVKI VAECGCRKCL PLRGLIRGRV VAADSREPLR FARILLGREP 501 550 ENSTTRP00000009372/1-1155 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000291495/1-1156 IGFTAYQGDF TIEVPPSTQR LVVTFVDPSG EFMDAVRVLP FDPRGAGVYH ENSBTAP00000019927/1-1157 IGFTSYQGDF TLEVAPSTQR LVMTFVDPSG QFVDTVRVLP FDPRGAGVYH bmy_02663T0/1-815 IGFTSYQGDF TIEVAPSTQR PVITFVDPSG QFVDTVRVLP FDPRGAGVYH BACU016626/1-1148 IGFTSYQGDF TIEVAPSTQR PVITFVDPSG QFVDTVRVLP FDPRGAGVYH 551 600 ENSTTRP00000009372/1-1155 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXY ENSP00000291495/1-1156 EVKAMRKKAP VILHTSQSNT IPLGELEDEA PLGELVLPSG AFRRADGKPY ENSBTAP00000019927/1-1157 EVKAMRKKAP IILDARQSNT ISLGEMGEEA PLGELIIPPG AFRRADGQPY bmy_02663T0/1-815 EVKAMRKKAP VILDASQSNT ISLGELENEA PLGELVIPPR AFRRADGEPY BACU016626/1-1148 EVKAMRKKAP VILDASQSNT ISLGEMEDEA PLGELVIPPR AFRRADGEPY 601 650 ENSTTRP00000009372/1-1155 TG-VEARVTF VDPRNVTSAA AAPSDLRFVD SDGELAPLR- YGMFSVDLRA ENSP00000291495/1-1156 SGPVEARVTF VDPRDLTSAA SAPSDLRFVD SDGELAPLRT YGMFSVDLRA ENSBTAP00000019927/1-1157 TGAVEAQVTF VDPRNLTSAA AAPSDLLFVD GDGELAPLRT YGMFSVDLRA bmy_02663T0/1-815 AGAVEARVTF VDPRNVTSAA AAPSDLRFVD GDGELAPLRT YGMFSVDLRA BACU016626/1-1148 AGAVEARVTF VDPRNVTSAA AAPSDLRFVD GDGELAPLRT YGMFSVDLRA 651 700 ENSTTRP00000009372/1-1155 AGSAEQLQTG PVAVRVAASQ IRMAGHVEAL KLWSLNPDTG LWEEESGFQR ENSP00000291495/1-1156 PGSAEQLQVG PVAVRVAASQ IHMPGHVEAL KLWSLNPETG LWEEESGFRR ENSBTAP00000019927/1-1157 AGSAEQLQTG LVAVRVAADQ IRMPGHMEAL KLWSLNPDTG LWEEESGFQR bmy_02663T0/1-815 AGSAEQLQTG PVAVRVAASQ IRMAGHVEAL KLWSLNPDTG LWEEESGFQR BACU016626/1-1148 AGSAEQLQTG PVAVRVAASQ IRMAGHVEAL KLWSLNPDTG LWEEESGFQR 701 750 ENSTTRP00000009372/1-1155 ERSAASRVRR EERVFLVGNV EIRERRLFNL DVPERRRCLV KVRAYANDKF ENSP00000291495/1-1156 EGSSGPRVRR EERVFLVGNV EIRERRLFNL DVPERRRCFV KVRAYANDKF ENSBTAP00000019927/1-1157 ERPASQRARR EERVFLVGNV EIRERRLFNL DVPERRRCFV KVRAYANDKF bmy_02663T0/1-815 ERSAASRVRR EERVFLVGNV EIRERRLFNL D--------- ---------- BACU016626/1-1148 ERSAASRVRR EERVFLVGNV EIRERRLFNL DVPERRRCLV KVRAYANEKF 751 800 ENSTTRP00000009372/1-1155 NPNEQVEGVV VTLVNLEPAP GFSANPRAWG RFDSAVTGPN GACLPAFCDA ENSP00000291495/1-1156 TPSEQVEGVV VTLVNLEPAP GFSANPRAWG RFDSAVTGPN GACLPAFCDA ENSBTAP00000019927/1-1157 TPSEQVEGVV VTLVNLEPAP GFSANPRAWG RFDSAVTGPN GACLPAFCDA bmy_02663T0/1-815 ---------- ---------- ---------- ---------- ---------- BACU016626/1-1148 TPSEQVEGVV VTLVNLEPAP GFSANPRAWG RFDSAVTGPN GACLPAFCDA 801 850 ENSTTRP00000009372/1-1155 DRPDAYTALV TATLGGEELE PAPSRPRPLP ATVGVAQPYL DKLGYRRTDH ENSP00000291495/1-1156 DRPDAYTALV TATLGGEELE PAPSLPRPLP ATVGVTQPYL DRLGYRRTDH ENSBTAP00000019927/1-1157 DQPDAYTAVV TATLGGEELE PAPSRPRPLP AAVGVAQPYL DRLDYRRTDH bmy_02663T0/1-815 ---------- ---------- ---------- -------PYL DRLGYRRTDH BACU016626/1-1148 DRPDAYTALV TATLGGEELE PAPSRPRPLP ATVGVAQPYL DKLGYRRTDH 851 900 ENSTTRP00000009372/1-1155 DDPSLKRNGF RINLAKPRSG DPAKANGPVY PWRNLRECQE APVTASHFRF ENSP00000291495/1-1156 DDPAFKRNGF RINLAKPRPG DPAEANGPVY PWRSLRECQG APVTASHFRF ENSBTAP00000019927/1-1157 DDPALKRSGF RINLAKPRPG EPTEANGPVY PWRSLRECQE APVTASHFRF bmy_02663T0/1-815 DDPSLKRNGF RINLAKPRSG DPTEANGPVY PWRNLRECQE APVTASHFRF BACU016626/1-1148 DDPSLKRNGF RINLAKPRSG DPTEANGPVY PWRNLRECQE APVTASHFRF 901 950 ENSTTRP00000009372/1-1155 ARVEMEKYEY NVVPFREGVP ASWTGDLLAW WPNPQEFRAC FLKVKIQGPQ ENSP00000291495/1-1156 ARVEADKYEY NVVPFREGTP ASWTGDLLAW WPNPQEFRAC FLKVKIQGPQ ENSBTAP00000019927/1-1157 ARVEADKYEY NVVPFREGAP ASWTGDLLAW WPNPQEFRAC FLKVKIQGPQ bmy_02663T0/1-815 ARVEMEKYEY NVVPFREGAP ASWTGDLLAW WPNPQEFRAC FLKVKIQGPQ BACU016626/1-1148 ARVEMEKYEY NVVPFREGVP ASWTGDLLAW WPNPQEFRAC FLKVKIQGPQ 951 1000 ENSTTRP00000009372/1-1155 EYMVRSHNSG GSHPRTRGQL YGLRDDRSVR DPQRPSTSAA CVEFKCSGML ENSP00000291495/1-1156 EYMVRSHNAG GSHPRTRGQL YGLRDARSVR DPERPGTSAA CVEFKCSGML ENSBTAP00000019927/1-1157 EYMVRSHNLG GSHPRTQGQL YGLRDSRSVR DPQRPSSSAA CVEFKCSGML bmy_02663T0/1-815 EYMVRSHNSG GSHPRTQGQL YGLRDDRSVR DPQRPSTSAA CVEFKCSGML BACU016626/1-1148 EYMVRSHNSG GSHPRTQGQL YGLRDDRSVR DPQRPSTSAA CVEFKCSGML 1001 1050 ENSTTRP00000009372/1-1155 FDQRQVDRTL VTIMPQGSCR RVAVNGLLQD YLTRHPPVAP ADDLAVFSML ENSP00000291495/1-1156 FDQRQVDRTL VTIMPQGSCR RVAVNGLLRD YLTRHPPPVP AEDPAAFSML ENSBTAP00000019927/1-1157 FDQRQVDRTL VTIMPQGSCR RVAVNGLLQD YLTRHPPLAP TDDLASFSML bmy_02663T0/1-815 FDQSQVDRTL VTIMPQGSCR RVEVNGLLQD YLTRHPPAAP ADDLAAFSML BACU016626/1-1148 FDQSQVDRTL VTIMPQGSCR RVEVNGLLQD YLTRHPPAAP ADDLAAFSML 1051 1100 ENSTTRP00000009372/1-1155 APLDPLGHNY GVYTVTDQSP RLAKEIAIGR CFDGSSDGFS REMKADAGTA ENSP00000291495/1-1156 APLDPLGHNY GVYTVTDQSP RLAKEIAIGR CFDGSSDGFS REMKADAGTA ENSBTAP00000019927/1-1157 APLDPLGHNY GVYTVTDQSP RLAKEIAIGR CFDGSSDGFS REMKADAGTA bmy_02663T0/1-815 APLDPLGHNY GVYTVTDQSP RLAKEIAIGR CFDGSSDGFS REMKADAGTA BACU016626/1-1148 APLDPLGHNY GVYTVTDQSP RLAKEIAIGR CFDGSSDGFS REMKADAGTA 1101 1150 ENSTTRP00000009372/1-1155 VTFQCRETPE GRPSLFQRLL ESPSAALGDI RR-------- --------EM ENSP00000291495/1-1156 VTFQCREPPA GRPSLFQRLL ESPATALGDI RR-------- --------EM ENSBTAP00000019927/1-1157 VTFQCREPTA GRPSLFQRLL ESPSAALGDI RR-------- --------EM bmy_02663T0/1-815 VTFQCRETPE GRPSLFQRLL ESPSSALGDI RR-------- --------EM BACU016626/1-1148 VTFQCRETPE GRPSLFQRLL EAPSAGPWGL RRXXXXXXXX XXXXXXXXXX 1151 1200 ENSTTRP00000009372/1-1155 GEVGRAQARA SGPLRTRRGR VQQ--- ENSP00000291495/1-1156 SEAAQAQARA SGPLRTRRGR VRQ--- ENSBTAP00000019927/1-1157 GESARVQARA SSPLRTRRGR AQQ--- bmy_02663T0/1-815 GEVARAQARA SGPLRTRRGR VQQ--- BACU016626/1-1148 XXXXXXXXXA AEPLPEAAGV PIGGSW