KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:09:50 2014 Check: 00 .. Name: ENSTTRP00000010319/1-484 Len: 495 Check: 2017 Weight: 1.00 Name: bmy_06111T0/1-353 Len: 495 Check: 7270 Weight: 1.00 Name: ENSBTAP00000019930/1-492 Len: 495 Check: 9838 Weight: 1.00 Name: ENSP00000302846/1-488 Len: 495 Check: 8898 Weight: 1.00 Name: BACU014999/1-489 Len: 495 Check: 2838 Weight: 1.00 // 1 50 ENSTTRP00000010319/1-484 MATPGSNASA -MASDRVNSP VTIPAVXXXX XXXXXXXXXX XXXXXXXXXX bmy_06111T0/1-353 MATPGSNASA -LASDRLNSP VTIPAVMFIF GVVGNLVAIV VLCKSRKEQK ENSBTAP00000019930/1-492 MTAPGTNASS SQASNPLNSP VTIPAVMFIF GVVGNLVAIV VLCKSRKEQK ENSP00000302846/1-488 MSTPGVNSSA SLSPDRLNSP VTIPAVMFIF GVVGNLVAIV VLCKSRKEQK BACU014999/1-489 MATPGSNASA -LASDRLNSP VTIPAVMFIF GVVGNLVAIV VLCKSRKEQK 51 100 ENSTTRP00000010319/1-484 XXXXXXXXXX XXXXXXXXTL LMSPVTIATY MKGQWTEDPA LCEYSTF-ML bmy_06111T0/1-353 ETTFYTLVCG LAVTDLLGTL LVSPVTIATY MKGQWPGGPA LCEYSTFILL ENSBTAP00000019930/1-492 ETTFYTLVCG LAVTDLLGTL LVSPVTIATY LKGQWPGGHA LCEYSTFILL ENSP00000302846/1-488 ETTFYTLVCG LAVTDLLGTL LVSPVTIATY MKGQWPGGQP LCEYSTFILL BACU014999/1-489 ETTFYTLVCG LAVTDLLGTL LVSPVTIATY MKGQWPGGPA LCEYSTFILL 101 150 ENSTTRP00000010319/1-484 FFGLSGLSII CAMSIERYLA INHAYFYSHY VDKRLAGLTL FAVYASNVLF bmy_06111T0/1-353 FFGLSGLSII CAMSIERYLA INHAYFYSHY VDKRLAGLTL FAVYASNVLF ENSBTAP00000019930/1-492 FFGLSGLSII CAMSIERYLA INHAYFYSHY VDKRLAGLTL FAVYASNVLF ENSP00000302846/1-488 FFSLSGLSII CAMSVERYLA INHAYFYSHY VDKRLAGLTL FAVYASNVLF BACU014999/1-489 FFGLSGLSII CAMSIERYLA INHAYFYSHY VDKRLAGLTL FAVYASNVLF 151 200 ENSTTRP00000010319/1-484 CALPNMGLGS SRLQYPDTWC FIDWTTNVTA HAAFSYMYAG FSSFLILATV bmy_06111T0/1-353 CALPNMGLGS SRLQYPDTWC FIDWTTNVTA HAAFSYMYAG FSSFLILATV ENSBTAP00000019930/1-492 CALPSMGLGS SRLQYPATWC FIDWTTNVTA HAAFSYMYAG FSSFLILATV ENSP00000302846/1-488 CALPNMGLGS SRLQYPDTWC FIDWTTNVTA HAAYSYMYAG FSSFLILATV BACU014999/1-489 CALPNMGLGS SRLQYPDTWC FIDWTTNVTA HAAFSYMYAG FSSFLILATV 201 250 ENSTTRP00000010319/1-484 LCNVLVCGAL LRMHRQFMRR TSLGTEQ-HH ATAA---VVQ AACRGSSAAA bmy_06111T0/1-353 LCNVLVCAAL LRMHRQFMRR TSLGTEQ-HH AAATAVAVAQ AACRGSSAAA ENSBTAP00000019930/1-492 LCNVLVCGAL LRMHRQFMRR TSLGTEQQHH AAAAAVALAP TACRAPPAAS ENSP00000302846/1-488 LCNVLVCGAL LRMHRQFMRR TSLGTEQ-HH AAAA----AS VASRGHPAA- BACU014999/1-489 LCNVLVCAAL LRMHRQFMRR TSLGTEQ-HH AAATAVAVAQ AACRGSSAAA 251 300 ENSTTRP00000010319/1-484 SPVLPRLSDF RRRRSFRRIA GAEIQMVILL IATSLVVLIC SIPLVVRVFV bmy_06111T0/1-353 SPALPRLSDF RRRRSFRRIA GAEIQMVILL IATSLVVLIC SIPLVVSG-- ENSBTAP00000019930/1-492 SPALPRLSDF RRRRSFRRIA GAEIQMVILL IATSLVVLIC SIPLVVRVFV ENSP00000302846/1-488 SPALPRLSDF RRRRSFRRIA GAEIQMVILL IATSLVVLIC SIPLVVRVFV BACU014999/1-489 SPALPRLSDF RRRRSFRRIA GAEIQMVILL IATSLVVLIC SIPLVVRVFI 301 350 ENSTTRP00000010319/1-484 NQLYQPNLER VISKNPDLQA IRIAAVNPIL DPWIYILLRK TVLSKAIEKI bmy_06111T0/1-353 ---------- ---------- ---------- --W------- ---------- ENSBTAP00000019930/1-492 NQLYRPQLEP VISKNPDLQA IRIASVNPIL DPWIYILLRK TVLSKAIEKI ENSP00000302846/1-488 NQLYQPSLER EVSKNPDLQA IRIASVNPIL DPWIYILLRK TVLSKAIEKI BACU014999/1-489 NQLYQPNLER VISKNPDLQA IRIAAVNPIL DPWIYILLRK TVLSKAIEKI 351 400 ENSTTRP00000010319/1-484 KCLFCRIGGS RRERSGQHCS DSRRTSSAMS SHSRSFFSRE LKEVSSTSQT bmy_06111T0/1-353 ---------- -----GQ--- ---------- GPTRPFSC-- ---------- ENSBTAP00000019930/1-492 KCLFCRIGGS RRERSGPHCS DSRRTSSAVS GHSRSFLSRE LKEISSTSQT ENSP00000302846/1-488 KCLFCRIGGS RRERSGQHCS DSQRTSSAMS GHSRSFISRE LKEISSTSQT BACU014999/1-489 KCLFCRIGGS RRERSGQHCS DSRRTSSAVS GHSRSFLSRE LKEVSSTSQT 401 450 ENSTTRP00000010319/1-484 ----LLLPDL SENSL-GGRN LLPGVPGMGL TQTDSTSLRT LRISETSDSS bmy_06111T0/1-353 ----IHLP-- ---------- --PPSP---- ---------- ------SPSS ENSBTAP00000019930/1-492 L---LYTPEL SENGLGGGRN LLPGVPGVGL TQIDSTSLRT LRISETSDSS ENSP00000302846/1-488 LLPDLSLPDL SENGL-GGRN LLPGVPGMGL AQEDTTSLRT LRISETSDSS BACU014999/1-489 L---LYMPDL SENGL-GGRN LLPGVPGMGL TQTDSTSLRT LRISETSDSS 451 500 ENSTTRP00000010319/1-484 QGQDSESVLL VDEVGGSGRA GPAPKGSSLQ VTFPNETLNL SEKCI bmy_06111T0/1-353 PSHSSAT--- --------NA SPPGRGWIST LCFSEQAQPL FTPRR ENSBTAP00000019930/1-492 QGQDSESFLL VDEVGGSCRA GPAPKGSSLQ VTFPSETLNL SEKCI ENSP00000302846/1-488 QGQDSESVLL VDEAGGSGRA GPAPKGSSLQ VTFPSETLNL SEKCI BACU014999/1-489 QGQDSERVLL VDEVGGSGRA GPAPKGSSLQ VTFPNETLNL SEKCI