KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:09:51 2014 Check: 00 .. Name: ENSP00000362867/1-1259 Len: 1262 Check: 6794 Weight: 1.00 Name: ENSBTAP00000019936/1-1226 Len: 1262 Check: 2420 Weight: 1.00 Name: ENSTTRP00000000203/1-1200 Len: 1262 Check: 8703 Weight: 1.00 Name: bmy_13396T0/1-973 Len: 1262 Check: 7633 Weight: 1.00 Name: BACU012734/1-1198 Len: 1262 Check: 4983 Weight: 1.00 // 1 50 ENSP00000362867/1-1259 MANGVIPPPG GASPLPQVRV PLEEPPLSPD VEEEDDDLGK TLAVSRFGDL ENSBTAP00000019936/1-1226 MANGVIPPPG GASPLPQVRV PLEEPPLSPD M-EEDDDLGK TLAVSRFGDL ENSTTRP00000000203/1-1200 ---------- ---------- ---------- ---------- ---------- bmy_13396T0/1-973 ---------- ---------- ---------- ---------- ---------- BACU012734/1-1198 ---------- ---------- ---------- MEEEEDDLGK TLAVSRFGDL 51 100 ENSP00000362867/1-1259 ISKPPAWDPE KPSRSYSERD FEFHRHTSHH THHPLSARLP PPHKLRRLPP ENSBTAP00000019936/1-1226 ISKPPAWDPE KPSRSYSERD FEFHRHTSHH THHPLSARLP PPHKLRRLPP ENSTTRP00000000203/1-1200 --------PK KPSRSYSERD FEFHRHTSHH THHPLSVRLP PPHKLRRLPA bmy_13396T0/1-973 ---------- ---------- ---------- ---------- ---------- BACU012734/1-1198 ISKPPAWDPE KPSRSYSERD FEFHRHTSHH THHPLSVRLP PPHKLRRLPP 101 150 ENSP00000362867/1-1259 TSARHTRRKR KKEKTSAPPS EGTPPIQEEG GAGVDEEEEE EEEEEGESEA ENSBTAP00000019936/1-1226 TSARQTRRKR KKEKTSAPPS EGTPPIQEEG GAGVD-EEEE EEEEEGESEA ENSTTRP00000000203/1-1200 TSARQTRRKR KKERTSAPPS EGTPPIQEEG GAGVDEEEEE EEEEEGESEA bmy_13396T0/1-973 ---------- ---------- ---------M GAG------- ---------- BACU012734/1-1198 TSARQTRRKR KKERTSAPPS EGTPPIQEEG GAGLDEEEEE EEEEEGESEA 151 200 ENSP00000362867/1-1259 EPVEPPHSGT PQKAKFSIGS DEDDSPGLPG RAAVTKPLPS VGPHTDKSPQ ENSBTAP00000019936/1-1226 EPAEPPPPGS PTKAKFSIGS DEDDSPSLSG RAAFTKPLPS VGPSSDKSPQ ENSTTRP00000000203/1-1200 EPVEPPPAGS PPKAKFSIGS DEDDSPGLSG RAAFTKPLPA VGPRSDKSPQ bmy_13396T0/1-973 ---------- ----RW---- ---------- ---------- ---------- BACU012734/1-1198 EPVEPPPAGS PPKAKFSIGS DEDDSPGLSG RAAFTKPLPP VGPRSDKSPQ 201 250 ENSP00000362867/1-1259 HSSRPCSELR DGDGTTDL-- -ALSSPRLLC CLPSSPSPRA RASRLAGEKS ENSBTAP00000019936/1-1226 HSV------- ---------- ---------- ---SSPSPRA RVSRITGEKG ENSTTRP00000000203/1-1200 HSVRPCPKLG EGRGTAHLHR GSLPVSRLPC CLLSSPSPRA RVSRVAGEKS bmy_13396T0/1-973 ---------- ---------- ---------- ---SSPSPRA RVSRVAGEKS BACU012734/1-1198 HSV------- ---------- ---------- ---SSPSPRA RVSRVAGEKS 251 300 ENSP00000362867/1-1259 RPWSPSASYD LRERLCPGSA LGNPGGPEQQ VPTDEAEAQM LGSADLDDMK ENSBTAP00000019936/1-1226 RPWSPSASYD LRERLCPGSA LGGPGSPEQQ VPTDEAEAQM LGSADLDDMK ENSTTRP00000000203/1-1200 RPRSPSASYD LRERLCPGSA LGSPGGPEQQ VPTDEAEAQM LGSADLDDMK bmy_13396T0/1-973 RPRSPSASYD LRERLCPGSA LGSPGGPEQQ VPTDEAEAQM LGSADLDDMK BACU012734/1-1198 RPRSPSASYD LRERLRPGSA LGSPGGPEQQ VPTDEAEAQM LGSADLDDMK 301 350 ENSP00000362867/1-1259 SHRLEDNPGV RRHLVKKPSR TQGGRGSPSG LAPILRRKKK KKKLDRRPHE ENSBTAP00000019936/1-1226 SHRLEDNPGM RRHLVKKPSR TQSGRGSASG LAPILRRKKK QQQLDRRPHE ENSTTRP00000000203/1-1200 SHRLEDNPGV RRHLVKKPSR MQGGRGSPSG LAPILRRKKK KQQLDRRPHE bmy_13396T0/1-973 SHRLEDNPGV RRHLVKKPSR TQGGRGSPSG LAPILRRKKK KQQLDRRPHE BACU012734/1-1198 SHRLEDNPGV RRHLVKKPSR TQGGRGSPSG LAPILRRKKK KQQLDRRPHE 351 400 ENSP00000362867/1-1259 VFVELNELML DRSQEPHWRE TARWIKFEED VEEETERWGK PHVASLSFRS ENSBTAP00000019936/1-1226 VFVELNELML DRSQEPHWRE TARWIKFEED VEEETERWGK PHVASLSFRS ENSTTRP00000000203/1-1200 VFVELNELML DRSQEPHWRE TARWIKFEED VEEETERWGK PHVASLSFRS bmy_13396T0/1-973 VFVELNELML DRSQEPHWRE TARWIKFEED VEEETERWGK PHVASLSFHS BACU012734/1-1198 VFVELNELML DRSQEPHWRE TARWIKFEED VEEETERWGK PHVASLSFHS 401 450 ENSP00000362867/1-1259 LLELRRTIAH GAALLDLEQT TLPGIAHLVV ETMIVSDQIR PEDRASVLRT ENSBTAP00000019936/1-1226 LLELRRTIAH GAALLDLEQT TLPGIAHLVV ETMIVSDQIR PEDRASVLRT ENSTTRP00000000203/1-1200 LLELRRTIAH GAALLDLEQT TLPGIAHLVV ETMIVSDQIR PEDRASVLRT bmy_13396T0/1-973 LLELRRTIAH GAALLDLEQT TLPGIAHLVV ETMIVSDQIR PEDRASVLRT BACU012734/1-1198 LLELRRTIAH GAALLDLEQT TLPGIAHLVV ETMIVSDQIR PEDRASVLRT 451 500 ENSP00000362867/1-1259 LLLKHSHPND DKDSGFFPRN PSSSSMNSVL GNHHPTPSHG PDGAVPTMAD ENSBTAP00000019936/1-1226 LLLKHSHPND DKDSGFFPRN ASSSSVNSVL GNHHPTPSHG PDGAVPTMAD ENSTTRP00000000203/1-1200 LLLKHSHPND DKDSGFFPRN ASSSSVNSVL GNHHPTPSHG PDGAVPTVAD bmy_13396T0/1-973 LLLKHSHPND DKDSGFFPRN ASSSSVNSVL GNHHPTPSHG PDGAVPTVAD BACU012734/1-1198 LLLKHSHPND DKDSGFFPRN ASSSSVNSVL GNHHPTPSHG PDGAVPTVAD 501 550 ENSP00000362867/1-1259 DLGEPAPLWP HDPDAKEKPL HMPGGDGHRG KSLKLLEKIP EDAEATVVLV ENSBTAP00000019936/1-1226 DLGEPAPLWP HDPEAKEKPL HMPGGDGHRG KSLKLLEKIP EDAEATVVLV ENSTTRP00000000203/1-1200 DLGEPAPLWP HDPEAKEKPL HMPGGDGHRG KSLKLLEKIP EDAEATVVLV bmy_13396T0/1-973 DLGEPAPLWP QDPEAKEKPL HMPGGDGHRG KSLKLLEKIP EDAEATVVLV BACU012734/1-1198 DLGEPAPLWP HDPEAKEKPL HMPGGDGHRG KSLKLLEKIP EDAEATVVLV 551 600 ENSP00000362867/1-1259 GCVPFLEQPA AAFVRLNEAV LLESVLEVPV PVRFLFVMLG PSHTSTDYHE ENSBTAP00000019936/1-1226 GCVPFLEQPA AAFVRLNEAV LLESVLEVPV PVRFLFVMLG PSHTSTDYHE ENSTTRP00000000203/1-1200 GCVPFLEQPA AAFVRLNEAV LLESVLEVPV PVRFLFVMLG PGHTSTDYHE bmy_13396T0/1-973 GCVPFLEQPA AAFVRLNEAV LLESVLEVPV PVRFLFVMLG PGHTSTDYHE BACU012734/1-1198 GCVPFLEQPA AAFVRLNEAV LLESVLEVPV PVRFLFVMLG PGHTSTDYHE 601 650 ENSP00000362867/1-1259 LGRSIATLMS DKLFHEAAYQ ADDRQDLLSA ISEFLDGSIV IPPSEVEGRD ENSBTAP00000019936/1-1226 LGRSIATLMS DKLFHEAAYQ ADDRQDLLSA ISEFLDGSIV IPPSEVEGRD ENSTTRP00000000203/1-1200 LGRSIATLMS DKLFHDAAYQ ADDRQDLLSA ISEFLDGSIV IPPSEVEGRD bmy_13396T0/1-973 LGRSIATLMS DKLFHDAAYQ ADDRQDLLSA ISEFLDGSIV IPPSEVEGRD BACU012734/1-1198 LGRSIATLMS DKLFHDAAYQ ADDRQDLLSA ISEFLDGSIV IPPSEVEGRD 651 700 ENSP00000362867/1-1259 LLRSVAAFQR ELLRKRRERE QTKVEMTTRG GYTAPGKELS LELGGSEATP ENSBTAP00000019936/1-1226 LLRSVAAFQR ELLRKRRERE QTKPELTTQG GYVAPGKELS MELGGSEATP ENSTTRP00000000203/1-1200 LLRSVAAFQR ELLRKRRERE QTKVEMTTQG GYVAPGKELA MDLGGSEVPP bmy_13396T0/1-973 LLRSVAAFQR ELLRKRRERE QTKVEMTTQG GYVAPGKELA MELGGSEAPP BACU012734/1-1198 LLRSVAAFQR ELLRKRRERE QTKVEMTTQG GYVAPGKELA MESGGSEAPP 701 750 ENSP00000362867/1-1259 EDDPLLRTGS VFGGLVRDVR RRYPHYPSDL RDALHSQCVA AVLFIYFAAL ENSBTAP00000019936/1-1226 DDDPLLRTGS VFGGLVRDVK RRYPHYPSDL RDALHSQCVA AVLFIYFAAL ENSTTRP00000000203/1-1200 DDDPLLRTGS VFGGLVRDVK RRYPHYPSDL RDALHSQCVA AVLFIYFAAL bmy_13396T0/1-973 DDDPLLRTGS VFGGLVRDVK RRYPHYPSDL RDALHSQCVA AVLFIYFAAL BACU012734/1-1198 DDDPLLRTGS VFGGLVRDVK RRYPHYPSDL RDALHSQCVA AVLFIYFAAL 751 800 ENSP00000362867/1-1259 SPAITFGGLL GEKTEGLMGV SELIVSTAVL GVLFSLLGAQ PLLVVGFSGP ENSBTAP00000019936/1-1226 SPAITFGGLL GEKTEGLMGV SELIVSTAVL GVLFSLLGAQ PLLVVGFSGP ENSTTRP00000000203/1-1200 SPAITFGGLL GEKTEGLMGV SELIVSTAVL GVLFSLLGAQ PLLVVGFSGP bmy_13396T0/1-973 SPAITFGGLL GEKTEGLMGV SELIVSTAVL GVLFSLLGAQ PLLVVGFSGP BACU012734/1-1198 SPAITFGGLL GEKTEGLMGV SELIVSTAVL GVLFSLLGAQ PLLVVGFSGP 801 850 ENSP00000362867/1-1259 LLVFEEAFFK FCRAQDLEYL TGRVWVGLWL VVFVLALVAA EGSFLVRYIS ENSBTAP00000019936/1-1226 LLVFEEAFFK FCRAQDLEYL TGRVWVGLWL VVFVLALVAA EGSFLVRYIS ENSTTRP00000000203/1-1200 LLVFEEAFFK FCRAQGLEYL TGRVWVGLWL VVFVLALVAA EGSFLVRYIS bmy_13396T0/1-973 LLVFEEAFFK FCRAQGLEYL TGRVWVGLWL VVFVLALVAA EGSFLVRYIS BACU012734/1-1198 LLVFEEAFFK FCRAQGLEYL TGRVWVGLWL VVFVLALVAA EGSFLVRYIS 851 900 ENSP00000362867/1-1259 PFTQEIFAFL ISLIFIYETF YKLYKVFTEH PLLPFYPPEG ALEGSLDAGL ENSBTAP00000019936/1-1226 PFTQEIFAFL ISLIFIYETF HKLYKVFTEH PLLPFYPPEG ALEAELDL-- ENSTTRP00000000203/1-1200 PFTQEIFAFL ISLIFIYETF HKLYKVFTEH PLLPFYPPAG ALASELDL-- bmy_13396T0/1-973 PFTQEIFAFL ISLIFIYETF HKLYKVFTEH PLLPFYPPEG ALAAEPDL-- BACU012734/1-1198 PFTQEIFAFL ISLIFIYETF HKLYKVFTEH PLLPFYPPEG ALAAEPDL-- 901 950 ENSP00000362867/1-1259 EPNGSALPPT EGPPSPRNQP NTALLSLILM LGTFFIAFFL RKFRNSRFLG ENSBTAP00000019936/1-1226 --NASALPPT EGPPGPRNQP NTALLSLILM LGTFLIAFFL RKFRNSRFLG ENSTTRP00000000203/1-1200 --NVSALPPT EGPPGPRNQP NTALLSLILM LGTFLIAFFL RKFRNSRFLG bmy_13396T0/1-973 --NGTALPPT EGPPGPRNQP NTALLSLILM LGTFLIAFFL RKFRNSRFLG BACU012734/1-1198 --NGTALPPT EGPPGPRNQP NTALLSLILM LGTFLIAFFL RKFRNSRFLG 951 1000 ENSP00000362867/1-1259 GKARRIIGDF GIPISILVMV LVDYSITDTY TQKLTVPTGL SVTSPDKRSW ENSBTAP00000019936/1-1226 GKARRIIGDF GIPISILVMV LVDYSITDTY TQKLTVPTGL SVTSPSKRTW ENSTTRP00000000203/1-1200 GKARRIIGDF GIPISILVMV LVDYSITDTY TQKLTVPTGL SVTSPHKRTW bmy_13396T0/1-973 GKARRIIGDF GIPISILVMV LVDYSITDTY TQKLTVPTGL SVTSPDKRTW BACU012734/1-1198 GKARRIIGDF GIPISILVMV LVDYSITDTY TQKLTVPTGL SVTSPNKRTW 1001 1050 ENSP00000362867/1-1259 FIPPLGSARP FPPWMMVAAA VPALLVLILI FMETQITALI VSQKARRLLK ENSBTAP00000019936/1-1226 FIPPLGSARP FPPWMMVAAA VPALLVLILI FMETQITALI VSQKARRLLK ENSTTRP00000000203/1-1200 FIPPLGSARP FPPWMMVAAA VPALLVLILI FMETQITALI VSQKARRLLK bmy_13396T0/1-973 FIPPLGSARP FPPWMMVAAA VPALLVLILI FMETQITALI VSQKARRLLK BACU012734/1-1198 FIPPLGSARP FPPWMMVAAA VPALLVLILI FMETQITALI VSQKARRLLK 1051 1100 ENSP00000362867/1-1259 GSGFHLDLLL IGSLGGLCGL FGLPWLTAAT VRSVTHVNAL TVMRTAIAPG ENSBTAP00000019936/1-1226 GSGFHLDLLL IGSLGGLCGL FGLPWLTAAT VRSVTHVNAL TVMRTAIAPG ENSTTRP00000000203/1-1200 GSGFHLDLLL IGSLGGLCGL FGLPWLTAAT VRSVTHVNAL TVMRTAIAPG bmy_13396T0/1-973 GSGFHLDLLL IGSLGGLCGL FGLPWLTAAT VRSVTHVNAL TVMRTAIAPG BACU012734/1-1198 GSGFHLDLLL IGSLGGLCGL FGLPWLTAAT VRSVTHVNAL TVMRTAIAPG 1101 1150 ENSP00000362867/1-1259 DKPQIQEVRE QRVTGVLIAS LVGLSIVMGA VLRRIPLAVL FGIFLYMGVT ENSBTAP00000019936/1-1226 DKPQIQEVRE QRVTGVLIAS LVGLSIVMGA VLRRIPLAVL FGIFLYMGVT ENSTTRP00000000203/1-1200 EKPQIQEVRE QRVTGVLIAS LVGLSIVMGA VLRRIPLAVL FGIFLYMGVT bmy_13396T0/1-973 DKPQIQEVRE QRVTGVLIAS LVGLSIVMGA VLRRIPLAVL FGIFLYMGVT BACU012734/1-1198 DKPQIQEVRE QRVTGVLIAS LVGLSIVMGA VLRRIPLAVL FGIFLYMGVT 1151 1200 ENSP00000362867/1-1259 SLSGIQLSQR LLLILMPAKH HPEQPYVTKV KTWRMHLFTC IQLGCIALLW ENSBTAP00000019936/1-1226 SLSGIQLSQR LLLILMPAKH HPEQPYVTKV KTWRMHLFTC IQLGCIALLW ENSTTRP00000000203/1-1200 SLSGIQLSQR LLLILMPAKH HPEQPYVTKV KTWRMHLFTC IQLGCIALLW bmy_13396T0/1-973 SLSGIQLSQR LLLILMPAKH HPEQPYVTK- ---------- ---------- BACU012734/1-1198 SLSGIQLSQR LLLILMPAKH HPEQPYVTKV KTWRMHLFTC IQLGCIALLW 1201 1250 ENSP00000362867/1-1259 VVKSTAASLA FPFLLLLTVP LRHCLLPRLF QDRELQALDS EDAEPNFDED ENSBTAP00000019936/1-1226 VVKSTAASLA FPFVLLLTVP LRRCLLPRLF QDRELQALDS EDAEPNFDED ENSTTRP00000000203/1-1200 VVKSTAASLA FPFLLLLTVP LRRCLLPRLF QDRELQALDS EDAEPNFDED bmy_13396T0/1-973 ---------- ---------- ---------- -------LDS EDAEPNFDED BACU012734/1-1198 VVKSTAASLA FPFLLLLTVP LRRCVLPRLF QDRELQALDS EDAEPNFDED 1251 1300 ENSP00000362867/1-1259 GQDEYNELHM PV ENSBTAP00000019936/1-1226 GQDEYNELHM PV ENSTTRP00000000203/1-1200 GQDEYNELHM PV bmy_13396T0/1-973 GQDEYNELHM PV BACU012734/1-1198 GQDEYNELHM PV