KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:09:52 2014 Check: 00 .. Name: ENSP00000381566/1-538 Len: 542 Check: 7904 Weight: 1.00 Name: bmy_15759T0/1-263 Len: 542 Check: 5444 Weight: 1.00 Name: ENSBTAP00000019942/1-478 Len: 542 Check: 5443 Weight: 1.00 Name: BACU019501/1-513 Len: 542 Check: 737 Weight: 1.00 Name: ENSTTRP00000008359/1-509 Len: 542 Check: 7134 Weight: 1.00 // 1 50 ENSP00000381566/1-538 MGPGPPAAGA APSPRPLSLV ARLSYAVGHF LNDLCASMWF TYLLLYLHSV bmy_15759T0/1-263 MGPGPPAAGA GAPPRPLSLV ARLSYAVGHF LNDLCASMWF TYLLLYLHSV ENSBTAP00000019942/1-478 MGPGPPAAGA GAPLRPLSLV ARLSYAVGHF LNDLCASMWF TYLLLYLHSV BACU019501/1-513 MGPGPPAAGA GAPPRPLSLV ARLSYAVGHF LNDLCASMWF TYLLLYLHSV ENSTTRP00000008359/1-509 MGPGPPAAGA GAPPRPLSLV ARLSYAVGHF LNDLCASMWF TYLLLYLHSV 51 100 ENSP00000381566/1-538 RAYSSRGAGL LLLLGQVADG LCTPLVGYEA DRAASCCARY GPRKAWHLVG bmy_15759T0/1-263 RAYSSRGAGL LLLLGQVADG LCTPLVGFEA DRAAGRCARF GPRKAWHLVG ENSBTAP00000019942/1-478 RAYSSRGAGL LLLLGQVADG LCTPLVGFEA DRAAGRCARF GPRKAWHLVG BACU019501/1-513 RAYSSRGAGL LLLLGQVADG LCTPLVGFEA DRAAGRCARF GPRKAWHLVG ENSTTRP00000008359/1-509 RAYSSRGAGL LLLLGQVADG LCTPLVGFEA DRAAGRCARF GPRKAWHLVG 101 150 ENSP00000381566/1-538 TVCVLLSFPF IFSPCLGCGA ATPEWAALLY YGPFIVIFQF GWASTQISHL bmy_15759T0/1-263 TICVLLSFPF IFSPCLGCQA TTPEWVALLY YGPFIVIFQF GWAATQIAHL ENSBTAP00000019942/1-478 TICVLLSFPF IFSPCLGCGA ATPEWAALLY YGPFIVIFQF GWAATQIAHL BACU019501/1-513 TICVLLSFPF IFSPCLGCQA STPEWVALLY YGPFIVIFQF GWAATQIAHL ENSTTRP00000008359/1-509 TICVLLSFPF IFSPCLGCNA TTPEWVALLY YGPFIVIFQF GWAATQIAHL 151 200 ENSP00000381566/1-538 SLIPELVTND HEKVELTALR YAFTVVANIT VYGAAWLLLH LQGSSRVEPT bmy_15759T0/1-263 SLIPELVTND HEK------- ---------- ---------- ---------- ENSBTAP00000019942/1-478 SLIPELVTND HEKVELTALR YAFTVVANIT VYGAAWLLLH LQGSPHTGPT BACU019501/1-513 SLIPELVTND HEKVELTALR YAFTVVASIT VYGAAWLLLH LQGSPHMGST ENSTTRP00000008359/1-509 SLIPELVTND HEKVELTALR YAFTVVASIT VYGAAWLLLH LQGSPHMGST 201 250 ENSP00000381566/1-538 QDISISDQLG GQDVPVFRNL SLLVVGVGAV FSLLFHLGTR ERRRPHAEEP bmy_15759T0/1-263 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019942/1-478 ED--VSDQLG VQDVPVFRNL SLLVVGVGAV FSLLFHLGTR EGRRRQVEEP BACU019501/1-513 QD--VYDQLG VQDVPVFRNL SLLVVGIGAV FSLLFHLGTR EGRRRQVEEP ENSTTRP00000008359/1-509 QD--VYDQLG VQDVPVFRNL SLLVVGVGAV FSLLFHLGTR EGRRRQVEEP 251 300 ENSP00000381566/1-538 GEHTPLLAPA TAQPLLLWKH WLREPAFYQV GILYMTTRLI VNLSQTYMAM bmy_15759T0/1-263 ---------- ---------- ---------V GLLYMSTRLI VNLSQTYMAM ENSBTAP00000019942/1-478 GEHSPLLAPS TTQPLLLWKH WLREPAFYQV GLLYMSTRLI VNLSQTYIAM BACU019501/1-513 DEHSPLLAPA TARPLLLWKH WLREPAFYQV GLLYMSTRLI VNLSQTYMAM ENSTTRP00000008359/1-509 DEHSPLLAPA TARPLLLWKH WLREPAFYQV GSLYMSTRLI VNLSQTYMAM 301 350 ENSP00000381566/1-538 YLTYSLHLPK KFIATIPLVM YLSGFLSSFL MKPINKCIGR NMTYFSGLLV bmy_15759T0/1-263 YLTYSLNLPK KFIATIPLVM YLSGFLSSFL LKPINKCIGR N-----GTLE ENSBTAP00000019942/1-478 YLTYSLHLPK RFIATIPLVM YLSGFCSSFL MKPVNKCIGR NMTYFVGLLV BACU019501/1-513 YLTYSLNLPK KFIATIPLVM YLSGFLSSFL LKPVNKCIGR NMTYFVGLLV ENSTTRP00000008359/1-509 YLTYSLNLPK KFIATIPLVM YLSGFLSSFL LKPVNKCIGR NMTYFVGLLV 351 400 ENSP00000381566/1-538 ILAFAAWVAL AEGLGVAVYA AAVLLGAGCA TILVTSLAMT ADLIGPHTNS bmy_15759T0/1-263 ---------- ---------- ---------- ---------- -----PNPDT ENSBTAP00000019942/1-478 ILAFAAWVAL AEELGMAVYV AAVLLGMGCA TILVTSLAMT ADLIGPHTHS BACU019501/1-513 ILAFAAWVAL ADELGVAVYV VAVLLGTGCA TILVTSLAMT ADLIGPHTHS ENSTTRP00000008359/1-509 ILAFAACVAL ADELGVAVYV VAVLLGMGCA TILVTSLAMT ADLIGPHTHS 401 450 ENSP00000381566/1-538 GAFVYGSMSF LDKVANGLAV MAIQSLHPCP SELCCRACVS FYHWAMVAVT bmy_15759T0/1-263 APW------- ---------- ---------- ---------- ---------- ENSBTAP00000019942/1-478 GAFVYGAMSF SDKVANGLAV MAIQSLHPCS LELCCKACVA FYHWVMVVVT BACU019501/1-513 GAFVYGAMSF SDKVANGLAV MAIQSLHPCS SELCCKACVA FYHWVMVAVT ENSTTRP00000008359/1-509 GAFVYGAMSF LDKVANGLAV MAIQSLHPCS SELCCKACVA FYHWVMVAVT 451 500 ENSP00000381566/1-538 GGVGVAAALC LCSLLLWPTR LRRS---FLA WRRGRGEDKG PGYSWIPTVL bmy_15759T0/1-263 -------SLT LCNLTA-TVN TR-------- ---------- ---------- ENSBTAP00000019942/1-478 GGVGVAATMA LCSLLVWPIR LR-------- ---------- ---------- BACU019501/1-513 GGVGVAATLA LCCLLVWPVR LRSSPPLCHI LPNPQDLLNI SSFLASTKSF ENSTTRP00000008359/1-509 GGVGVAATLA LCSLLVWPVR LR-------- ---------- SSFLASTKSF 501 550 ENSP00000381566/1-538 VQPPRP-TSP FLWEAPLAWR CTRKKWSGAG TKPWPREDWG TH bmy_15759T0/1-263 -CPTRPGAAP LLL------- ---------- ---------- -- ENSBTAP00000019942/1-478 -RCSAN-SNP ---------- ---------- ---------- -- BACU019501/1-513 AQHPRP-AGP FLQEAP---- ---------- ---------- -- ENSTTRP00000008359/1-509 AQPPRP-AGP FLQEAPLVCC TRRTSQLWLS ---------- --