KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:09:54 2014 Check: 00 .. Name: ENSP00000384792/1-1523 Len: 1548 Check: 2749 Weight: 1.00 Name: ENSBTAP00000019966/1-1498 Len: 1548 Check: 3642 Weight: 1.00 Name: ENSTTRP00000003687/1-1514 Len: 1548 Check: 8364 Weight: 1.00 Name: bmy_05918T0/1-966 Len: 1548 Check: 7603 Weight: 1.00 Name: BACU000619/1-1004 Len: 1548 Check: 4805 Weight: 1.00 // 1 50 ENSP00000384792/1-1523 MAAVGSGGYA RNDAGEKLPS VMAGVPARRG QSSPPPAPPI CLRRRTRLST ENSBTAP00000019966/1-1498 MAALGPGGYA RNDTVEKLPS VMAGVPARRA QSSPPPAPPL CLRRRTRLPA ENSTTRP00000003687/1-1514 ---------- -----EKLPS IMAG-PARRA QSS-PPVLPL CLRRRTRLSA bmy_05918T0/1-966 ---------- ---------- ---------- ---------- ---------- BACU000619/1-1004 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000384792/1-1523 ASEETVQNRV SLEKVLGITA QNSSGLTCDP GTGHVAYLAG CVVVILDPKE ENSBTAP00000019966/1-1498 APEDTVQNRV SLEKVLGITA QNSSGLTCDP STGHVAYLAG CVVVILNPKE ENSTTRP00000003687/1-1514 APEDTVQNRV SLEKVLGITA QNSNGLTCDP STGHVAYLAG CVVVILNPKE bmy_05918T0/1-966 ---------- ---------- ---------- ---------- ---------- BACU000619/1-1004 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000384792/1-1523 NKQQHIFNTA RKSLSALAFS PDGKYIVTGE NGHRPAVRIW DVEEKNQVAE ENSBTAP00000019966/1-1498 NKQQHILNTA RKSLSALAFS PDGKYIVTGE NGHRPAVRIW DVEEKSQVAE ENSTTRP00000003687/1-1514 NKQQHIFNTA RKSLSALAFS PDGKYIVTGE NGHRPAVRIW DVEEKSQVAE bmy_05918T0/1-966 ---------- ---------- ---------- ---------- ---------- BACU000619/1-1004 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000384792/1-1523 MLGHKYGVAC VAFSPNMKHI VSMGYQHDMV LNVWDWKKDI VVASNKVSCR ENSBTAP00000019966/1-1498 MLGHKYGVAC VAFSPNMKHI VSMGYQHDMV LNVWDWKKDI LVASNKVSCR ENSTTRP00000003687/1-1514 MLGHKYGVAC VAFSPSMKHI VSMGYQHDMV LNVWDWKKDI VVASNKVSCR bmy_05918T0/1-966 ---------- ---------- ---------- ---------- ---------- BACU000619/1-1004 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000384792/1-1523 VIALSFSEDS SYFVTVGNRH VRFWFLEVST ETKVTSTVPL VGRSGILGEL ENSBTAP00000019966/1-1498 VIALSFSEDS SYFVTVGNRH VRFWFLEVST EAKVTGTVPL VGRSGILGEL ENSTTRP00000003687/1-1514 VIALSFSEDS SYFVTVGNRH VRFWFLEVST EAKVTSTVPL VGRSGILGEL bmy_05918T0/1-966 ---------- ---------- ---------- ---------- ---------- BACU000619/1-1004 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000384792/1-1523 HNNIFCGVAC GRGRMAGSTF CVSYSGLLCQ FNEKRVLEKW INLKVSLSSC ENSBTAP00000019966/1-1498 HDNVFCGVAC GRGQMAGSTF CVSYSGLLCQ FNEKRVLEKW INLKVSLSSC ENSTTRP00000003687/1-1514 HNNVFCGVAC GRGQMTGSTF CVSYSGLLCQ FNEKRVLEKW INLKVSLSSC bmy_05918T0/1-966 ---------- ---------- ---------- ---------- ---------- BACU000619/1-1004 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000384792/1-1523 LCVSQELIFC GCTDGIVRIF QAHSLHYLAN LPKPHYLGVD VAQGLEPSFL ENSBTAP00000019966/1-1498 LCVSQELIFC GCTDGIVRIF QAHSLQYLTN LPKPHYLGVD VAQGLEPSFL ENSTTRP00000003687/1-1514 LCVSQELIFC GCTDGIVRIF QAHSLQYLAN LPKPHYLGVD VAQGLEPSFL bmy_05918T0/1-966 ---------- ---------- ---------- ---------- ---------- BACU000619/1-1004 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000384792/1-1523 FHRKAEAVYP DTVALTFDPI HQWLSCVYKD HSIYIWDVKD INRVGKVWSE ENSBTAP00000019966/1-1498 FHRKAEATYP DTVALTFDPM HQWLSCVYKD HSIYIWDVRD INQVGKVWSE ENSTTRP00000003687/1-1514 FSRKAEAIYP DTVALIFDPI HQWLSCVYKD HSIYIWDVKD INKVGKVWSE bmy_05918T0/1-966 ---------- ---------- ---------- ---------- ---------- BACU000619/1-1004 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000384792/1-1523 LFHSSYVWNV EVYPEFEDQR ACLPSGSFLT CSSDNTIRFW NLDSSPDSHW ENSBTAP00000019966/1-1498 LFHSSYVWNV EVYPEFEDQR ACLPSGSFLT CSSDNTIRFW NMDSNPDSHW ENSTTRP00000003687/1-1514 LFHSSYVWNV EVYPEFEDQR ACLPSGSFLT CSSDNTIRFW NMDGSPDSHW bmy_05918T0/1-966 ---------- ---------- ---------- ---------- ---------- BACU000619/1-1004 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000384792/1-1523 QKNIFSNTLL KVVYVENDIQ HLQDMSHFPD RGSENGTPMD VKAGVRVMQV ENSBTAP00000019966/1-1498 QKNIFSNTLL KVVYVENDIQ HLQDMSHFPD RGSENAMPVD VKAGVRVMQV ENSTTRP00000003687/1-1514 QKNIFSNTLL KVVYVENDIQ HLQNMSHFPD RGSENGMPVD MKAGVRVMQV bmy_05918T0/1-966 ---------- ---------- ---------- ---------- -------MQV BACU000619/1-1004 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000384792/1-1523 SPDGQHLASG DRSGNLRIHE LHFMDELVKV EAHDAEVLCL EYSKPETGLT ENSBTAP00000019966/1-1498 SPDGQHLASG DRSGNLRIHE LHFMDELVKV EAHDAEVLCL EYSKPETGLT ENSTTRP00000003687/1-1514 SPDGQHLASG DRSGNLRIHE LHFMDELVKV EAHDAEVLCL EYSKPETGLS bmy_05918T0/1-966 SPDGQHLASG DRSGNLRIHE LHFMDELVKV EAHDAEVLCL EYSKPETGLT BACU000619/1-1004 ---------- ---------- ---MDELVKV EAHDAEVLCL EYSKPETGLT 551 600 ENSP00000384792/1-1523 LLASASRDRL IHVLNVEKNY NLEQTLDDHS SSITAIKFAG NRDIQMISCG ENSBTAP00000019966/1-1498 LLASASRDRL IHVLNVEKNY NLEQTLDDHS SSITAIKFTG NRDIQMISCG ENSTTRP00000003687/1-1514 LLASASRERL IHVLXXXXXX XXXXXXXXXX XXXXXXXXXX HKDIQMISCG bmy_05918T0/1-966 LLASASRDRL IHVLNVEKNY NLEQTLDDHS SSITAIKFAG HRDIQMISCG BACU000619/1-1004 LLASASRDRL IHVLNVEKNY NLEQTLDDHS SSITAIKFAG HRDIQMISCG 601 650 ENSP00000384792/1-1523 ADKSIYFRSA QQGSDGLHFV RTHHVAEKTT LYDMDIDITQ KYVAVACQDR ENSBTAP00000019966/1-1498 ADKSIYFRSA QRASDGLHFV RTHHVAEKTT LYDMDIDITQ KYVAVACQDR ENSTTRP00000003687/1-1514 ADKSIYFRSA QQASDGLHFV RTHHVAEKTT LYDMDIDITQ KYVAVACQDR bmy_05918T0/1-966 ADKSIYFRSA QRASDGLHFV RTHHVAEKTT LYDMDIDITQ KYVAVACQDR BACU000619/1-1004 ADKSIYFRSA QRASDGLHFV RTHHVAEKTT LYDMDIDITQ KYVAVACQDR 651 700 ENSP00000384792/1-1523 NVRVYNTVNG KQKKCYKGSQ GDEGSLLKVH VDPSGTFLAT SCSDKSISVI ENSBTAP00000019966/1-1498 NVRVYNTMNG KQKKCYKGSQ GDDGSLLKVH VDPSGTFLAT SCSDKSISVI ENSTTRP00000003687/1-1514 NVRVYNTMNG KQKKCYKGSQ GDEGSLLKVH VDPSGTFLAT SCSDKSISVI bmy_05918T0/1-966 NVRVYNTMNG KQKKCYKGSQ GDEGSLLKVH VDPSGTFLAT SCSDKSISVI BACU000619/1-1004 NVRVYNTMNG KQKKCYKGSQ GDEGSLLKVH VDPSGTFLAT SCSDKSISVI 701 750 ENSP00000384792/1-1523 DFYSGECIAK MFGHSEIITS MKFTYDCHHL ITVSGDSCVF IWHLGPEITN ENSBTAP00000019966/1-1498 DFYSGECVAK MFGHSEIVTG MKFTYDCRHL ITVSGDSCVF IWHLGPEITN ENSTTRP00000003687/1-1514 DFYSGECVAK MFGHSEIVTG MKFTYDCRHL ITVSGDXXXX XWHLGPEITS bmy_05918T0/1-966 DFYSGECVAK MFGHSEIVTG MKFTYDCRHL ITVSGDSCVF IWHLGPEITN BACU000619/1-1004 DFYSGECIAK MFGHSEIVTG MKFTYDCRHL ITVSGDSCVF IWHLGPEITN 751 800 ENSP00000384792/1-1523 CMKQHLLEID HRQQQQ-HTN DKKRSGHPRQ DTYVSTPSEI HSLSPGEQTE ENSBTAP00000019966/1-1498 CMKQHLLEID HREQQQ-NTK DGKWSGHPRQ EIYASVPSEI CSLSPGEQTE ENSTTRP00000003687/1-1514 CMKQHLLEID HREQQQENTK GRNWSSHPRQ ETYASMPNEI CSLSPGEQTE bmy_05918T0/1-966 CMKQHLLEMD RCEQQQQDTK GGNWSSRPRQ ETYASVPNEI CSLSPGEQTE BACU000619/1-1004 CMKQHLLEMD RCEQQQQDTK DRNWSSCSRQ ETYASMPNEI CSLSPGEQTE 801 850 ENSP00000384792/1-1523 DDLEEECEPE EMLKTPSKDS LDPDPRCLLT NGKLPLWAKR LLGDDDVADG ENSBTAP00000019966/1-1498 DELEEECESE ELLKTPSKES LDPDPQCLLT NGKLPLWAKR LLGDDDAADS ENSTTRP00000003687/1-1514 DKLEEECEPE ELLKTPSKES LDPDPRCLLT NGKLPLWAKR LLGDDDVADS bmy_05918T0/1-966 DELEEECEPE ELLKTPSKES LDP------- ---------- --GDDDVADS BACU000619/1-1004 DELEEECEPE ELLKTPSKES LDPDPRCLLT NGKLPLWAKR LLGDDDVADS 851 900 ENSP00000384792/1-1523 LAFHAKRSYQ PHGRWAERAG QEPLKTILDA QDLDCYFTPM KPESLENSIL ENSBTAP00000019966/1-1498 TAFHAKRSYQ PHGRWAERAD QEPLKTILDA RDLDCYFTPM KPESLEDSVL ENSTTRP00000003687/1-1514 SAFHAKRSYQ PHGRWAERAD QEPLKTILDA RDLDCYFTPM KPESLEDSVL bmy_05918T0/1-966 SAFHAKRSYQ PHGRWAERAD QEPLKTILDA RDLDCYFTPM KPESLEDSVL BACU000619/1-1004 SAFHAKRSYQ PHGRWAERAD QEPLKTILDA RDLDCYFTPM KPENLEDSVL 901 950 ENSP00000384792/1-1523 DSLEPQSLAS LLSESESPQE AGRGHPSFLP QQKESSEASE LILYSLEAEV ENSBTAP00000019966/1-1498 DAMESQRLAG LLTESESPQE DGCGHPSLSP PQQGSPEASE LITCPLETEV ENSTTRP00000003687/1-1514 DTVEPQRLAG LLSESESPQD NGCGPPSLPP LQRESSEASE LIIYPLETEV bmy_05918T0/1-966 DTVESQRLAG LLSESESPQD NGCGPPSLPP LQRESSEASE LIIYPLETE- BACU000619/1-1004 DTVESQRLAG LLSESESPQD NGCGPPSLPP LQRESSEASE LIIYPLETEV 951 1000 ENSP00000384792/1-1523 TVTGTDSQYC RKEVEAGPGD QQGDSYLRVS SDSPKDQSPP EDSGESEADL ENSBTAP00000019966/1-1498 TVTGMDSEYC AEEVVEACGD QQGDPFLPVP SIGSKDRSPP EDSGESEADL ENSTTRP00000003687/1-1514 TVTGTDSKYC AEEVERAPGD QQGDSYLRAP SIDSKDQRPP EDSGESEADL bmy_05918T0/1-966 ---------- ---------- ---------- ---------- ---------- BACU000619/1-1004 TVTGTDSKYC AEEVERAPGD QQGDSYLRAP SIGSKDQSPP EDSGESEADL 1001 1050 ENSP00000384792/1-1523 ECSFAAIHSP APPPDPAPRF ATSLPHFPGC AGPTEDELSL PEGPSVPSSS ENSBTAP00000019966/1-1498 ECSFTTIHSS PPQPDTEPQF DTM-PPIPGC PGTAG-ELPR PEVPDISNSS ENSTTRP00000003687/1-1514 ECSFTTIHSS PAQPDPDPQF DVT-PPTPGC PGTTE-ELSQ PEVPSVSNGS bmy_05918T0/1-966 ---------- ---PDPDPQF DVT-PPTPGC PGTTE-ELSQ PEVPSISNGS BACU000619/1-1004 ECSFTTIHSS PPQPDPDPQF DVT-PPIPGC PGTTE-ELSQ PEVPSISNGS 1051 1100 ENSP00000384792/1-1523 LPQTPEQEKF LRHHFETLTE SPCRELFPAA LGDVEASEAE DHFFNPRLSI ENSBTAP00000019966/1-1498 LPQTPEQEKF LRHHFETLTD AQPE----GS LRDLKAPETE DDFFNPRLSI ENSTTRP00000003687/1-1514 LPQTPEQEKF LRHHFETLTD AHPEEPFHGS LRDLKASEAE DNFFNPRLSI bmy_05918T0/1-966 LPQTPEQEKF LRHHFETLTD AHPEELFHGS LRDLKASEAE DDFFNPRLSI BACU000619/1-1004 LPQTPEQEKF LRHHFETLTD AHPAELFHGS LRDLKASEAE DDFFNPRLSI 1101 1150 ENSP00000384792/1-1523 STQFLSSLQK ASRFTHTFPP RATQCLVKSP EVKLMDRGGS QP-----RAG ENSBTAP00000019966/1-1498 SAQFLSRLQK TSRFPHAFPS RLPQHLVKSS EVRLTDLRGE PP-----TVG ENSTTRP00000003687/1-1514 SGQFLSRLQK TSRFTHTFPS RLPLHLVKSP EVKLMDLRGS PPRAEPLRAG bmy_05918T0/1-966 SGQFLSRLQK TSRFTHTFPS RLPLHLMKSP EVKLMDLGGS PPRAEPLRAG BACU000619/1-1004 SGQFLSRLQK TSRFTHTFPS RLPLHLVKSP EVKLTDLGGS PPRAEPLRAG 1151 1200 ENSP00000384792/1-1523 TGYASPDRTH VLAAGKAE-- -ETLEAWRPP PPCLTSLASC VPASSVLPTD ENSBTAP00000019966/1-1498 AGSTSPVRTN VVPGGKAE-- -ETLEVWSPL SPCLTGLVPC IPSSSALPTD ENSTTRP00000003687/1-1514 TGYTCPGRTN VISGGKAEEP LETLEAWSPL TPCLTGLAPC ILPSSVPPTD bmy_05918T0/1-966 TGYTCPGRTN VISGGKAEEP LETLETWSPL TPCLTGLAPC ILPSSVPPTD BACU000619/1-1004 TGYTCPGRTN VISGGKAEEP LETLEAWSPL ---------- ---------N 1201 1250 ENSP00000384792/1-1523 RNLPTPTSAP TPGLAQGVHA PSTCSYMEAT ASSRARISRS ISLGDSEGPI ENSBTAP00000019966/1-1498 KKPPAPTALP AAGLAQVLHT PTTCSHMEAT ASSHAKMSRS ISLE------ ENSTTRP00000003687/1-1514 KKPPTPAALP TPGLAQGFHT PAARSCMEAT ASSCARIPHS ISIEDSEDPV bmy_05918T0/1-966 KKPPTPAALP TPGLAQGVHT PAARSCMEAT ASSCAKIPRS ISVEDSEGPV BACU000619/1-1004 KKPPTPAALP TPGLAQGVHT PAARSCVEAT ASSCAKIPRS ISVEDSEGPV 1251 1300 ENSP00000384792/1-1523 VATLAQPLRR PSSVGELASL GQELQAITTA TTPSLDSEGQ EPALRSWGNH ENSBTAP00000019966/1-1498 ---------- -----ELASL SQELQAVTTT VTHSSDSEGR EPALPSRGNH ENSTTRP00000003687/1-1514 LAELARPLCR SSSLGELASL GQELQVITTT VTPSSDSEGQ EAALPSRGNH bmy_05918T0/1-966 LAEPARPLCR SSSLGELASL GQELQVITTT VTPSSDSEGQ EAALPSRGNH BACU000619/1-1004 LAEPARPLCR SSSLGELASL GQELQVITTT VTPSSDSEGQ EAALPSRGNH 1301 1350 ENSP00000384792/1-1523 EARANLRLTL SSACDGLLQP ---------- -----PVDTQ PGVTVPAVSF ENSBTAP00000019966/1-1498 EARASLKLSL SSICDRLLLP ---------- ----EPVDTE RDVTVTTDGF ENSTTRP00000003687/1-1514 EARASLKLTL PSICDRLVLP ---------- -----PVAIQ PNVMVTTASF bmy_05918T0/1-966 EARASLKLTL SSICDRLVLP PPQLEPPTTC VWSQEPVATQ PNVTVTTASF BACU000619/1-1004 EARASLKLTL SSICDRPVLP PPQLEPPSTC VWSQEPVATQ PNVMVTTASF 1351 1400 ENSP00000384792/1-1523 PAPSPVEESA LRLHGSAFRP SLPAPESPGL PAHPSNPQLP EARPGIPGGT ENSBTAP00000019966/1-1498 PAHSPADGIA SRLHKSAFLP RFLAPVRLDT PVLPNSPPLP EARPRVLGSI ENSTTRP00000003687/1-1514 LAPSPVDGSA PRLHNATFLP RFLATESLNT PSHPNSPPLP EARPGVPGSI bmy_05918T0/1-966 LAPSPVDGSA PRLHNATFLP RFLAPESLNT PARPNSPPLP EARPGVPGSI BACU000619/1-1004 LAPSPVDGSA PRLHNATFLP RFLAPESLNT PARPNSPPLP EARPGVPGSI 1401 1450 ENSP00000384792/1-1523 ASLLEPTSGA LGLLQGSPAR WSEPWVPVEA LPPSPLELSR VGNILHRLQT ENSBTAP00000019966/1-1498 ASLREPTPEV PSPVQDCPGH WEDPRAPTSF LPPDPLELSN VGTIVHRLQA ENSTTRP00000003687/1-1514 TSLLEPTLDA LSPVQGCPGH CGEPRGPARV LPPDPLELSN VGTVVHRLQT bmy_05918T0/1-966 TSLLEPTPDA LSPVQGCPGH CGEPRGPARV LPPDPLELSN VGTVVHRLQT BACU000619/1-1004 TSLLEPTPDA LSPVQGCPGH CGEPRGPARV LPPHPLELSN VGTVVHRLQT 1451 1500 ENSP00000384792/1-1523 TFQEALDLYR VLVSSGQVDT GQQQARTELV STFLWIHSQL EAEC-LVGTS ENSBTAP00000019966/1-1498 AFQEALDLYH LMVSSDEVNA EQRQARTELA STFLWIHSQL EASDWLVGMD ENSTTRP00000003687/1-1514 TFQEALDLYH LMVSSDEVGA EQRQARTELA STFLWIHSQL EANDWLVGTD bmy_05918T0/1-966 TFQEALDLYH LMVSSDEVST EQRQARTELA STFLWIHSQL EANGWLVGTD BACU000619/1-1004 TFQEALDLYH LTVSSDEVSA EQRQARTELA SAFLWIHSQL EASGWLVGTD 1501 1550 ENSP00000384792/1-1523 VAPAQALPSP GPPSPPTLYP LASPDLQALL EHYSELLVQA VRRKARGH ENSBTAP00000019966/1-1498 VATAQAPPSP GAPSPPTLCP LASPDLRALL EHYSELLVQA VRRKARGD ENSTTRP00000003687/1-1514 VAPAQALPNP GPPSPPTLCP LASPDLRALL EHYSELLVQA VRRKARGD bmy_05918T0/1-966 VAPAQALPSP GPPSPPTLCP LASPDLRALL EHYSELLVQA VRRKARGD BACU000619/1-1004 VAPAQALPSP GPPSPPTLCP LASPDLRALL EHYSELLVQA VRRKARGD