KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:09:56 2014 Check: 00 .. Name: ENSTTRP00000003690/1-243 Len: 244 Check: 3503 Weight: 1.00 Name: ENSP00000221855/1-244 Len: 244 Check: 2391 Weight: 1.00 Name: ENSBTAP00000019973/1-244 Len: 244 Check: 5147 Weight: 1.00 Name: bmy_05921T0/1-208 Len: 244 Check: 4206 Weight: 1.00 Name: BACU000621/1-243 Len: 244 Check: 5047 Weight: 1.00 // 1 50 ENSTTRP00000003690/1-243 MEVTGLSA-T VNIFISSSLN SFRSQKRYSR SLTIAEFKCK LQLVVGSPAS ENSP00000221855/1-244 MEVTGVSAPT VTVFISSSLN TFRSEKRYSR SLTIAEFKCK LELLVGSPAS ENSBTAP00000019973/1-244 MEVTGLSAPT VNVFISSSLN SFRSQKRYSR SLTVAEFKCK LQLVVGSPAS bmy_05921T0/1-208 MEVTGLSAPT VNVFISSSLN SFRSQKRYSR SLTIAEFKCK LQLVVGSPAS BACU000621/1-243 MEVTGLSAPT VNVFISSSLN TFRSQKRYSR SLTIAEFKCK LQLVVGSPAS 51 100 ENSTTRP00000003690/1-243 CMELELYGPD DKFYSKLDQE DALLGSYPVD DGCRIHVIDH SGARLGEYED ENSP00000221855/1-244 CMELELYGVD DKFYSKLDQE DALLGSYPVD DGCRIHVIDH SGARLGEYED ENSBTAP00000019973/1-244 CMELELYGPD DKFCCKLDQD DALLGSYPVD DGCRIHVIDH SGARLGEYED bmy_05921T0/1-208 CMELELYGPD DKFYSKLDQE DALLGSYP-- ------VIDH SGARLGEYED BACU000621/1-243 CMELELYGPD DKFYSKLDQE DALLGSYPVD DGCRIHVIDH SGARLGEYED 101 150 ENSTTRP00000003690/1-243 MSKVEKYEIS QEAYDQRQXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000221855/1-244 VSRVEKYTIS QEAYDQRQDT VRSFLKRSKL GRYNEEERAQ QEAEAAQRLA ENSBTAP00000019973/1-244 ISKVEKYEIS QEAYEQRQDS IRSFLKRNKL GRFNEEERAQ QEAENSQRLI bmy_05921T0/1-208 MSKVEKYEIS QEAYDQKQNS VRSFLKRNKL GRYSEEERAQ QEAESSQRLT BACU000621/1-243 MSKVEKYELS QEAYDQRQNS VRSFLKRNKL GRYSEEERAQ QEAESSQRLT 151 200 ENSTTRP00000003690/1-243 XXXXXXXXXX XXXXXXXXXX XXXPRRGTVM YVGLTDFKPG YWIGVRYDEP ENSP00000221855/1-244 EEKAQASSIP VGSRCEVRAA GQSPRRGTVM YVGLTDFKPG YWIGVRYDEP ENSBTAP00000019973/1-244 EEEAQASTIP VGSRCEVRTP GQPPRRGTVM YVGLTDFKPG YWIGIRYDEP bmy_05921T0/1-208 EE-AQAGAIP VGSRCEVQAP GQPPRRGTVI ---------- ---------- BACU000621/1-243 EE-AQAGTIP VGSRCEVQAP GQPPRRGTVM YVGLTDFKPG YWIGVRYDEP 201 250 ENSTTRP00000003690/1-243 LGKNDGSVNG KRYFECQAKY GAFVKPSVVT VGDFPEEDYG LDEM ENSP00000221855/1-244 LGKNDGSVNG KRYFECQAKY GAFVKPAVVT VGDFPEEDYG LDEI ENSBTAP00000019973/1-244 LGKNDGSVNG KRYFECQAKY GAFVKPSVVT VGDFPEEDYG LDEM bmy_05921T0/1-208 -------VNG KRYFECQAKY GAFVKPSVVT VGDFPEEDYG LDEM BACU000621/1-243 LGKNDGSVNG KRYFECQAKY GAFVKPSVVT VGDFPEEDYG LDEM