KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:10:01 2014 Check: 00 ..
Name: ENSP00000304236/1-375 Len: 378 Check: 756 Weight: 1.00
Name: ENSBTAP00000020009/1-375 Len: 378 Check: 7008 Weight: 1.00
Name: ENSTTRP00000005261/1-372 Len: 378 Check: 5793 Weight: 1.00
Name: bmy_07855T0/1-372 Len: 378 Check: 5180 Weight: 1.00
Name: BACU015946/1-372 Len: 378 Check: 5041 Weight: 1.00
//
1 50
ENSP00000304236/1-375 --MERASCLL LLLLP-LVHV SATTPEPCEL DDEDFRCVCN FSEPQPDWSE
ENSBTAP00000020009/1-375 MVRVCVPYLL LLLLPSLLRV SADTTEPCEL DDDDFRCVCN FTDPKPDWSS
ENSTTRP00000005261/1-372 --MVFVPCLL LLLLP-VLRV SAATPEPCEL DEDDFRCVCN FTDPKPDWSS
bmy_07855T0/1-372 --MVCVPCLL LLLLP-LLRV SAATPEPCEL DEEDFRCVCN FTDPKPDWSS
BACU015946/1-372 --MVCVPCLL LLLLP-LLRV SAATPEPCEL DEEDFRCVCN FTDPKPDWSS
51 100
ENSP00000304236/1-375 AFQCVSAVEV EIHAGGLNLE PFLKRVDADA DPRQYADTVK ALRVRRLTVG
ENSBTAP00000020009/1-375 AVQCMVAVEV EISAGGRSLE QFLK--GADT NPKQYADTIK ALRVRRLKLG
ENSTTRP00000005261/1-372 AMQCMVAVEV EIRGGSHNLE QFLK--GADV DSKQYADTIR ALRWRRLTLG
bmy_07855T0/1-372 GFQCVAAVEV EIRGGGRSLE QFLK--SADA DPKQYADTIK ALRMRRLTLG
BACU015946/1-372 AFQCVAAVEV EIRGGGRSLE QFLK--SADA DPKQYADTIK ALRMRRLTLG
101 150
ENSP00000304236/1-375 AAQVPAQLLV GALRVLAYSR LKELTLEDLK ITGTMPPLPL EATGLALSSL
ENSBTAP00000020009/1-375 AAQVPAQLLV AVLRALGYSR LKELTLEDLE VTGPTPPTPL EAAGPALTTL
ENSTTRP00000005261/1-372 AAQVPALLLV ALLRALGYSR LKELTFEDLE VTGPMPPPPL EATGPALSTL
bmy_07855T0/1-372 AAQVPALLLV ALLRALGYSR LKELTLEDLE VTGPMPPPPL EATGPALSTL
BACU015946/1-372 AAQVPALLLV ALLRALGYSR LKELTLEDLE VTGPMPPPPL EATGPALSTL
151 200
ENSP00000304236/1-375 RLRNVSWATG RSWLAELQQW LKPGLKVLSI AQAHSPAFSC EQVRAFPALT
ENSBTAP00000020009/1-375 SLRNVSWTTG GAWLGELQQW LKPGLRVLNI AQAHSLAFPC AGLSTFEALT
ENSTTRP00000005261/1-372 SLRNVSWATG GAWLGELQQW LKPGLRVLNI AQAHSLAFAC AQLPTFQALT
bmy_07855T0/1-372 SLRNVSWATG GAWLGELQQW LKPGLRVLNI AQAHSLAFAC AQLPTFQALT
BACU015946/1-372 SLRNVSWATG GAWLGELQQW LKPGLRVLNI AQAHSLAFAC AQLPTFQALT
201 250
ENSP00000304236/1-375 SLDLSDNPGL GERGLMAALC PHKFPAIQNL ALRNTGMETP TGVCAALAAA
ENSBTAP00000020009/1-375 TLDLSDNPSL GDSGLMAALC PNKFPALQYL ALRNAGMETP SGVCAALAAA
ENSTTRP00000005261/1-372 SLDLSDNPGL GERGLIAALC PHKFPALQGL ALRNAGMETL SSVCAALAAA
bmy_07855T0/1-372 SLDLSDNPGL GERGLIAALC PHKFPALQGL ALRNAGMETL SSVCAALAAA
BACU015946/1-372 SLDLSDNPGL GERGLIAALC PHKFPALQGL ALRNAGMETL SSVCAALAAA
251 300
ENSP00000304236/1-375 GVQPHSLDLS HNSLRATVNP SAPRCMWSSA LNSLNLSFAG LEQVPKGLPA
ENSBTAP00000020009/1-375 RVQPQSLDLS HNSLRVTA-P GATRCVWPSA LRSLNLSFAG LEQVPKGLPP
ENSTTRP00000005261/1-372 SVQPHRLDLS HNSLRATA-P GATSCAWPSA LSSLNLSFAG LEQVPKGLPP
bmy_07855T0/1-372 SVQPHRLDLS HNSLRATA-P GATSCVWPSS LSSLSLSFAG LEQVPKGLPP
BACU015946/1-372 SVQPHRLDLS HNSLRATA-P GATSCVWPSS LSSLSLSFAG LEQVPKGLPP
301 350
ENSP00000304236/1-375 KLRVLDLSCN RLNRAPQPDE LPEVDNLTLD GNPFLVPGTA LPHEGSMNSG
ENSBTAP00000020009/1-375 KLSVLDLSCN KLSREPRRDE LPEVNDLTLD GNPFLDPGAL QHQNDPMISG
ENSTTRP00000005261/1-372 KLSVLDLSCN RLSRAPRPDE LPEVNNLTLD GNPFLDPGAL EYQEDLKSSG
bmy_07855T0/1-372 KLSVLDLSCN RLSRAPRPDE LPEVNNLTLD GNPFLDAGAL QHQEDLKSSG
BACU015946/1-372 KLSVLDLSCN RLSRAPRPDE LPEVNNLTLD GNPFLDAGAL NHQEDLKSSG
351 400
ENSP00000304236/1-375 VVPACARSTL SVGVSGTLVL LQGARGFA
ENSBTAP00000020009/1-375 VVPACARSAL TMGVSGALAL LQGARGFA
ENSTTRP00000005261/1-372 VVPVCARSAL TMGVSGALAL LQGAGDFA
bmy_07855T0/1-372 VVPVCARSAL TMGVSGALAL LQGAGAFA
BACU015946/1-372 VVPVCARSAL TMGVSGALAL LQGARAFA