KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:10:02 2014 Check: 00 .. Name: ENSP00000370023/1-763 Len: 763 Check: 8698 Weight: 1.00 Name: ENSBTAP00000020020/1-763 Len: 763 Check: 4457 Weight: 1.00 Name: ENSTTRP00000009681/1-763 Len: 763 Check: 115 Weight: 1.00 Name: bmy_01054T0/1-684 Len: 763 Check: 3860 Weight: 1.00 Name: BACU014529/1-704 Len: 763 Check: 9054 Weight: 1.00 // 1 50 ENSP00000370023/1-763 MVACRAIGIL SRFSAFRILR SRGYICRNFT GSSALLTRTH INYGVKGDVA ENSBTAP00000020020/1-763 MVASRAIGSL SRFTASRTLR CSGYICRSFT RSSALLTRTH INYGVRGDVA ENSTTRP00000009681/1-763 MVASRAVGSL SRFTASRMLR CPGYICRNFT RSSALLTRTH INYGVKGDVA bmy_01054T0/1-684 MVAFRAVGSL SRFTASRMLR CPGYICRNFT KSSALLTRTH INYGVKGDVA BACU014529/1-704 MVASRAVGSL GRFTPSRMLR CPGYICRNFT KSSALLNRTH INYGVKGDVA 51 100 ENSP00000370023/1-763 VVRINSPNSK VNTLSKELHS EFSEVMNEIW ASDQIRSAVL ISSKPGCFIA ENSBTAP00000020020/1-763 VIRINSPNSK VNTLSQELHS EFMEVMNEVW SSSQIRSAVL ISTKPGCFIA ENSTTRP00000009681/1-763 VIRINSPNSK VNTLGQEVHS EFIEVMNEVW SSNQIRSAVL ISSKPGCFIA bmy_01054T0/1-684 VIRINSPNSK VNTLGQELHS EFIEVMNEVW SSNHIRSAVL ISSKPGCFIA BACU014529/1-704 VIRINSPNSK VNTLGQELHS EFIEVMNEVW SSNQIRSAVL ISSKPGCFIA 101 150 ENSP00000370023/1-763 GADINMLAAC KTLQEVTQLS QEAQRIVEKL EKSTKPIVAA INGSCLGGGL ENSBTAP00000020020/1-763 GADLNMLNSC TTSQEVTQIS QEAQKMFEKL EKSTKPVVAA INGSCLGGGL ENSTTRP00000009681/1-763 GADLNMLTAC TTPQEVTQIS QEAQRMFEKV EKSTKPIVAA INGSCLGGGL bmy_01054T0/1-684 GADLNMLTAC TTSQEVTQIS QEAQKMFEKV EKSTKPIVAA INGSCLGGGL BACU014529/1-704 GADLNMLTAC TTPQEVIQIS QEAQKMFEKV EKSTKPIVAA INGSCLGGGL 151 200 ENSP00000370023/1-763 EVAISCQYRI ATKDRKTVLG TPEVLLGALP GAGGTQRLPK MVGVPAALDM ENSBTAP00000020020/1-763 ELAISCQYRI ATKDKKTVLG SPEVLLGILP GAGATQRLPK MVGIPAAFDM ENSTTRP00000009681/1-763 ELAISCQYRI ATKDKKTVLG SPEVLLGILP GAGGTQRLPK MVGVPAAFDM bmy_01054T0/1-684 E--------- ---------- ---------- ---------- -VGVPAAFDM BACU014529/1-704 E--------- ---------- ---------- ---------- -VGVPAAFDM 201 250 ENSP00000370023/1-763 MLTGRSIRAD RAKKMGLVDQ LVEPLGPGLK PPEERTIEYL EEVAITFAKG ENSBTAP00000020020/1-763 MLTGRGIRAD RAKKMGLVDQ LVEPLGPGVK PPEERTIEYL EEVAITFAKG ENSTTRP00000009681/1-763 MLTGRGIRAD RAKKMGLVDQ LVEPLGPGIK PPEERTIEYL EEVAITFAKG bmy_01054T0/1-684 MLTGRGIRAD RAKKMGLVDQ LVEPLGPGIK PPEERTIEYL EEVAITFAKG BACU014529/1-704 MLTGRGIRAD RAKKMGLVDQ LVEPLGPGIK PPEERTIEYL EEVAITFAKG 251 300 ENSP00000370023/1-763 LADKKISPKR DKGLVEKLTA YAMTIPFVRQ QVYKKVEEKV RKQTKGLYPA ENSBTAP00000020020/1-763 LADKKITPKR DKGLVEKLTS YALSIPFVRQ QIYKKVEEKV RKQTKGLYPA ENSTTRP00000009681/1-763 LADKKISPKR DKGLVEKLTS YAMSIPFVRQ QIYKKVEERV RKQTKGLYPA bmy_01054T0/1-684 LADKKISPKR DKGLVEKLTS YAMSIPFVRQ QIYKKVEEKV RKQTKGLYPA BACU014529/1-704 LADKKISPKR DKGLVEKLTS YALSIPFVRQ QIYKKVEEKV RKQTKGLYPA 301 350 ENSP00000370023/1-763 PLKIIDVVKT GIEQGSDAGY LCESQKFGEL VMTKESKALM GLYHGQVLCK ENSBTAP00000020020/1-763 PLKIIDVVKT GIEQGSNAGY LSESQTFGEL AMTKESKALM GLYRGQTQCK ENSTTRP00000009681/1-763 PLKIIDVVKT GIEQGSDAGY LSESQKFGEL AMTKESKALM GLYRGQTLCK bmy_01054T0/1-684 PLKIID---- ---------- -----KFGEL AMTKESKALM GLYRGQTLCK BACU014529/1-704 PLKIID---- ---------- -----KFGEL AMTKESKALM GLYRGQTLCK 351 400 ENSP00000370023/1-763 KNKFGAPQKD VKHLAILGAG LMGAGIAQVS VDKGLKTILK DATLTALDRG ENSBTAP00000020020/1-763 KNKFGAPQKE VKQLAVLGAG LMGAGIAQVS VDKGLQTILK DTTLPALGRG ENSTTRP00000009681/1-763 KNKFGAPQKE VKQLAILGAG LMGAGIAQVS VDKGLQTILK DATLAALGRG bmy_01054T0/1-684 KNKFGAPRKE VKQLAILGAG LMGAGIAQVS VDKGLQTILK DATLAALGRG BACU014529/1-704 KNKFGAPQKE VKQLAILGAG LMGAGIAQVS VDKGLQTTLK DATLAALGRG 401 450 ENSP00000370023/1-763 QQQVFKGLND KVKKKALTSF ERDSIFSNLT GQLDYQGFEK ADMVIEAVFE ENSBTAP00000020020/1-763 QQQVFKGLND KVKKKTLTSF ERDAMFSNLI GQLDYRGFEK ADMVIEAVFE ENSTTRP00000009681/1-763 QQQVFRGLND KVKKKALTSF ERDAFFSNLT GQLDYQGFEK ADMVIEAVFE bmy_01054T0/1-684 QQQVFKG--- ---------- -------NLT GQLDYQGFEK ADMVIEAVFE BACU014529/1-704 QQQVFKGLND KVKKKALTSF ERDAFFSNLT GQLDYQGFEK ADMVIEAVFE 451 500 ENSP00000370023/1-763 DLSLKHRVLK EVEAVIPDHC IFASNTSALP ISEIAAVSKR PEKVIGMHYF ENSBTAP00000020020/1-763 DLNLKHRVLK EAEAVIPDHC VFASNTSALP IGEIATVSKR PEKVIGMHYF ENSTTRP00000009681/1-763 DLSLKHKVLK EVEAVIPDHC VFASNTSALP INEIAAVSKR PEKVIGMHYF bmy_01054T0/1-684 DLSLKHKVLK EVEAVIPDHC VFASNTSALP INEIAAISKR PEKVIGMHYF BACU014529/1-704 DLSLKHKVLK EVEAVIPDHC VFASNTSALP INEIAAVSKR PEKVIGMHYF 501 550 ENSP00000370023/1-763 SPVDKMQLLE IITTEKTSKD TSASAVAVGL KQGKVIIVVK DGPGFYTTRC ENSBTAP00000020020/1-763 SPVDKMQLLE IITTEKTSKD TTASAVDVGL RQGKVIIVVK DGPGFYTTRC ENSTTRP00000009681/1-763 SPVDKMQLLE IITTQKTSKD TTASAVEVGL KQGKVIIVVK DGPGFYTTRC bmy_01054T0/1-684 SPVDKMQLLE IITTPKTSKD TTASAVEVGL KQGKVIIVVK DGPGFYTTRC BACU014529/1-704 SPVDKMQLLE IITTPKTSKD TTASAVEVGL KQGKVIIVVK DGPGFYTTRC 551 600 ENSP00000370023/1-763 LAPMMSEVIR ILQEGVDPKK LDSLTTSFGF PVGAATLVDE VGVDVAKHVA ENSBTAP00000020020/1-763 LTPMMSEVIR ILQEGVGPKK LDSLTTSFGF PVGAATLVDE VGVDVAKHVA ENSTTRP00000009681/1-763 LAPMMSEVIR ILQEGVGPKK LDSLTTSFGF PVGAATLVDE VGVDVAKHVA bmy_01054T0/1-684 LAPMMSEVIR ILQEGVGPKK LDSLTTSFGF PVGAATLVDE VGVDVAKHVA BACU014529/1-704 LAPMMSEVIR ILQEGVGPKK LDSLTTSFGF PVGAATLVDE VGVDVAKHVA 601 650 ENSP00000370023/1-763 EDLGKVFGER FGGGNPELLT QMVSKGFLGR KSGKGFYIYQ EGVKRKDLNS ENSBTAP00000020020/1-763 ENLGKEFGER FAGGSLEMLQ QMISKGFLGR KSGKGFYIYQ EGVKNKNLNS ENSTTRP00000009681/1-763 ENLGKVFGER FAGGSLEVLK QMIAKGFLGR KSGKGFYIYQ EGVKNKNLNS bmy_01054T0/1-684 ENLGKVFGER FAGGSLEVLK QMISKGFLGR KSGKGFYIYQ EGVKXKNLNS BACU014529/1-704 ENLGKVFGER FAGGSLEVLK QMISKGFLGR KSGKGFYIYR EGVKNKNLNS 651 700 ENSP00000370023/1-763 DMDSILASLK LPPKSEVSSD EDIQFRLVTR FVNEAVMCLQ EGILATPAEG ENSBTAP00000020020/1-763 DMDSILASLK MPSQPDVSSD EDIQYRLVTR FVNEAILCLQ EGVLATPTEG ENSTTRP00000009681/1-763 DIDSILASLK MPSQPDVSSD EDIQYRLVTR FVNEAVLCLQ EGVLASPTEG bmy_01054T0/1-684 DIDSILASLK MPSQPDVSSD EDIQYRLVTR FVNEAVLCLQ EGILATPTEG BACU014529/1-704 DIDSILAGLK MPSQPDVSSD EDIQYRLVTR FVNEAVLCLQ EGVLATPTEG 701 750 ENSP00000370023/1-763 DIGAVFGLGF PPCLGGPFRF VDLYGAQKIV DRLKKYEAAY GKQFTPCQLL ENSBTAP00000020020/1-763 DIGAVFGLGF PPCLGGPFHF VDLYGAQKIV DRLRKYEAAY GKQFTPCQLL ENSTTRP00000009681/1-763 DIGAVFGLGF PPSLGGPFRF VDLYGAQKIV DRLRKYEAAY GKQFTPCQLL bmy_01054T0/1-684 DIGAVFGLGF PPCLGGPFRF VDLYGAQKIV DRLRKYEAAY GKQFTPCQLL BACU014529/1-704 DIGAVFGLGF PPCLGGPFRF VDLYGAQKIV DRLRKYEAAY GKQFTPCQLL 751 800 ENSP00000370023/1-763 ADHANSPNKK FYQ ENSBTAP00000020020/1-763 VDHANNPNKK FYQ ENSTTRP00000009681/1-763 VDHASSPNKK FYQ bmy_01054T0/1-684 MDHASNPNKK FYQ BACU014529/1-704 MDHASSPNKK FYQ