KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:10:05 2014 Check: 00 ..
Name: ENSTTRP00000011802/1-1361 Len: 1407 Check: 6717 Weight: 1.00
Name: ENSP00000296474/1-1400 Len: 1407 Check: 4048 Weight: 1.00
Name: ENSBTAP00000020028/1-1396 Len: 1407 Check: 6472 Weight: 1.00
Name: bmy_06026T0/1-950 Len: 1407 Check: 1489 Weight: 1.00
Name: BACU002385/1-1380 Len: 1407 Check: 7004 Weight: 1.00
//
1 50
ENSTTRP00000011802/1-1361 MELHPPPLQP FLLLLLL--- ---PAVPETG GSWQCPRXXX XXXXXXXXXX
ENSP00000296474/1-1400 MELLPPLPQS FLLLLLL--- ---PAKPAAG EDWQCPRTPY AASRDFDVKY
ENSBTAP00000020028/1-1396 MELHPPLFQP FLLLLLL--L PTLPAVPETG GSWQCPRIPY AASRDFAVEY
bmy_06026T0/1-950 MELHPPPLQP FLLLLLL-PL PELPAVPETG GSWQCPRIPY AASRDFDVEY
BACU002385/1-1380 MELHPPPLQP FLLLLLLLPL PQLPAVPETG GSWQCPRIPY AASRDFDVEY
51 100
ENSTTRP00000011802/1-1361 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
ENSP00000296474/1-1400 VVPSFSAGGL VQAMVTYEGD RNESAVFVAI RNRLHVLGPD LKSVQSLATG
ENSBTAP00000020028/1-1396 SVPSFSPGGP VQAVATYEGG REGSAVFVAT RNRLHVLGPD LQPVESLATG
bmy_06026T0/1-950 LVPSFSAGRP VQAVATYEGG REGSAVFVAT RNRLHVLGPD LQPVESLATG
BACU002385/1-1380 LVPSFSAGRP VQAVATYEGG REGRAVFVAT RNRLHVLGPD LQPVESLATG
101 150
ENSTTRP00000011802/1-1361 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
ENSP00000296474/1-1400 PAGDPGCQTC AACGPGPHGP PGDTDTKVLV LDPALPALVS CGSSLQGRCF
ENSBTAP00000020028/1-1396 PAGAPGCQTC AACGPGPHGP PGDTDTQVLV LEPALPALIS CGSSLRGRCF
bmy_06026T0/1-950 PAGAPGCQTC AACGPGPHGP PGDTDAQVLV LEPVLPALIS CGSSLRGRCF
BACU002385/1-1380 PAGAPGCQTC AACGPGPHGP PGDTDAQVLV LEPVLPALIS CGSSLRGRCF
151 200
ENSTTRP00000011802/1-1361 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
ENSP00000296474/1-1400 LHDLEPQGTA VHLAAPACLF SAHHNRPDDC PDCVASPLGT RVTVVEQGQA
ENSBTAP00000020028/1-1396 LHELEPGGTA LHLAPPVCLF S-EHNRPEDC PDCVASPLGT LVTVVEQGQA
bmy_06026T0/1-950 LHEIEPGGTA LHLAPPVCLF SAHHNHPEDC PDCVASPLGT LVTVVEQGHA
BACU002385/1-1380 LHEIEPGGTA LHLAPPVCLF SAHHNHPEDC PDCVASPLGT LVTVVEQGHA
201 250
ENSTTRP00000011802/1-1361 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
ENSP00000296474/1-1400 SYFYVASSLD AAVAASFSPR SVSIRRLKAD ASGFAPGFVA LSVLPKHLVS
ENSBTAP00000020028/1-1396 SYLYVASSLD SAVAASFSPL SVSIRRLKAD GSGFAAGFAA LSVLPQHLDS
bmy_06026T0/1-950 SYFYVASSLD SAVAASFSPR SVSIRRLKAD ASGFAPGFAA LSVVPEHLAS
BACU002385/1-1380 SYFYVASSLD SAVAASFSPR SVSIRRLKAD ASGFAPGFAA LSVVPEHLAS
251 300
ENSTTRP00000011802/1-1361 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
ENSP00000296474/1-1400 YSIEYVHSFH TGAFVYFLTV QPASVTDDPS ALHTRLARLS ATEPELGDYR
ENSBTAP00000020028/1-1396 YRIEYVYSFH AGAFVYFLTV QPADVAAAPG TLHTRLARLS AVETDLGDYR
bmy_06026T0/1-950 YRIEYVYSFR AGAFVYFLTV QPANVVDAPG TLHTRLARLS AVETDLADYR
BACU002385/1-1380 YRIEYVYSFR AGAFVYFLTV QPANVVDAPG ALHTRLARLS AVETDLADYR
301 350
ENSTTRP00000011802/1-1361 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
ENSP00000296474/1-1400 ELVLDCRFAP KRRRRGAPEG GQPYPVLRVA HSAPVGAQLA TELSIAEGQE
ENSBTAP00000020028/1-1396 ELVLHCHFAP KRRRRAAHEG GQPYPVLRAA HAAPVGGHLA AELSIPEGQE
bmy_06026T0/1-950 ELVLDCRFAP KRRRRAAHKG AQPYPVLRAA HAAPVGGRLA TELSIAEGQE
BACU002385/1-1380 ELVLDCRFAP KRRRRAAHEG AQPYPVLRAA HAAPVGGRLA TELSIAEGQE
351 400
ENSTTRP00000011802/1-1361 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
ENSP00000296474/1-1400 VLFGVFVTGK DGGPGVGPNS VVCAFPIDLL DTLIDEGVER CCESPVHPGL
ENSBTAP00000020028/1-1396 VLFGVFSASR DSSPGADPNS VVCAFPVHLL DTLIEKGVEH CCEPPVPPGL
bmy_06026T0/1-950 VLFGVFSASR DSXPGVDPNS VVCAFPVDLL DTLIEQGVER CCEPPVHPGL
BACU002385/1-1380 VLFGVFWASR DSGPGVDPNS VVCAFPVGLL DTLIEQGVER CCEPPVHPGL
401 450
ENSTTRP00000011802/1-1361 XXXXXXXXXX XXXXXXPGLV APSPKTSCRH FPLLVSSSLL RVDLFNGLLG
ENSP00000296474/1-1400 RRGLDFFQSP SFCPNPPGLE ALSPNTSCRH FPLLVSSSFS RVDLFNGLLG
ENSBTAP00000020028/1-1396 RRGLDFFQLP SFCPDAPGLG ASSPNISCRH FPLLVSGNLL RVDLFNGLLG
bmy_06026T0/1-950 RRGLDFFQLP SFCPDP---- -----VSRKK GPSL------ ----------
BACU002385/1-1380 RRGLDFFQLP SFCPDPPGLV APSPKTSCRH FPLLVSSSLL RVDLFNGLLG
451 500
ENSTTRP00000011802/1-1361 PAQVTALHVT RLNNVTVAHM GTADGRILQV ELARSLNYLL YVSNFSLGSN
ENSP00000296474/1-1400 PVQVTALYVT RLDNVTVAHM GTMDGRILQV ELVRSLNYLL YVSNFSLGDS
ENSBTAP00000020028/1-1396 PVEVTALYVT RLDNVTVAHM GTADGRILQV ELARSLNYLL YVSNFSLGSN
bmy_06026T0/1-950 ---------- ---------- ---------V ELARSLNYLL YVSNFSLGSN
BACU002385/1-1380 PAQVTALHVT RLDNVTVAHM GTADGRILQV ELARSLNYLL YVSNFSLGSN
501 550
ENSTTRP00000011802/1-1361 GQPVHRDVSR LGDHLLFASG DQVFQVPIQG PGCR------ ------RFMG
ENSP00000296474/1-1400 GQPVQRDVSR LGDHLLFASG DQVFQVPIQG PGCRHFLTCG RCLRAWHFMG
ENSBTAP00000020028/1-1396 GQPVHRDVRR LGDHLLFASG DQVFQVPIRG PGCRHFLTCG RCLRAQRFMG
bmy_06026T0/1-950 GQPVHRDVSR LGDHLLFASG DQV---PIQG PGCRHFLTCG RCLRAQRFMG
BACU002385/1-1380 GQPVHRDVSR LGDHLLFASG DQVFQVPIQG PGCRHFLTCG RCLRAQRFMG
551 600
ENSTTRP00000011802/1-1361 CGWGA----- ---------- ------LIAF SPHSGPLRGS TRLTLCGSNF
ENSP00000296474/1-1400 CGWCGNMCGQ QKECPGSWQQ DHCPPKLTEF HPHSGPLRGS TRLTLCGSNF
ENSBTAP00000020028/1-1396 CGWCGGMCGR QKECPGSWQQ DYCPPVLTEF YPRSGPLRGS TRLTLCGSNF
bmy_06026T0/1-950 CGWCGGMCGR QKECPGSWQQ DHCPPELTK- ---------- ---------V
BACU002385/1-1380 CGWCGGMCGR QKECPGSWQQ DHCPPELTKF SPHTGPLRGS TRLTLCGSNF
601 650
ENSTTRP00000011802/1-1361 YLHPPGLVPE GTHQVTVGQS PCRLLLKGNS NLXXXXXXXX XXXXXXXXXX
ENSP00000296474/1-1400 YLHPSGLVPE GTHQVTVGQS PCRPLPKDSS KLRPVPRKDF VEEFECELEP
ENSBTAP00000020028/1-1396 YLYPSGLVPE GTHQVTVGRS PCRLLPKGNS DLSRLPRKDF IEDFECELEP
bmy_06026T0/1-950 WLAWQG---T GTHQVTVGQS PCRLLLKGNS NLSQVPRKDF VEELECELEP
BACU002385/1-1380 YLHPPGLVPE GTHQVTVGQS PCRLLLKGNS NLSQVPRKDF VEELECELEP
651 700
ENSTTRP00000011802/1-1361 XXXXXXGPAN VSLTVTNMPL GKHFRVDGTS MLRGFSFMEP VLTAVQPLFG
ENSP00000296474/1-1400 LGTQAVGPTN VSLTVTNMPP GKHFRVDGTS VLRGFSFMEP VLIAVQPLFG
ENSBTAP00000020028/1-1396 LSTQVAGPAN VSLTVTNMPL GRHFRVEGTS MLGGFSFMEP VLTAVRPFFG
bmy_06026T0/1-950 LGTQEAGPAN ISLTVNNMPL GKHFRVDGTS MLRGFSFMEP MLTAVQPLFG
BACU002385/1-1380 LGTQEAGPAN VSLTVNNMPL GKHFRVDGTS MLRGFSFMEP MLTAVQPLFG
701 750
ENSTTRP00000011802/1-1361 PRAGGTCLTL EGQGLSVGTS RAVLVNGTEC LLKRVSEGQL LCTTPPGAAT
ENSP00000296474/1-1400 PRAGGTCLTL EGQSLSVGTS RAVLVNGTEC LLARVSEGQL LCATPPGATV
ENSBTAP00000020028/1-1396 PRAGGTCLTL EGRGLSIGTS QTVLVNGTEC PLKQVSEGQL LCTTPPGAAT
bmy_06026T0/1-950 PRAGGTCLTL EGQGLSVGTS RAVLVNGTEC LLKRVSEGQL LCTTPPGAAT
BACU002385/1-1380 PQAGGTCLTL EGQGLSVGTS RAVLVNGTEC LLKRVSEGQL LCTTPPGAAT
751 800
ENSTTRP00000011802/1-1361 ARVPIRLQVG GAEVPGSWNF HYQEDPIMLG ISPNCGYTGS HVTIHGQHLT
ENSP00000296474/1-1400 ASVPLSLQVG GAQVPGSWTF QYREDPVVLS ISPNCGYINS HITICGQHLT
ENSBTAP00000020028/1-1396 ASVPIRLQVG GAEVPGSWNF HYREDPIVLG ISPKCGYTGS HVTIRGQHLT
bmy_06026T0/1-950 ARVPIRLQVG GAEVPGSWNF HYQEDPIMLG ISPNCGYTGS HVTIHGQHLT
BACU002385/1-1380 ARVPIRLQVG GAEVPGSWNF HYQEDPIMLG ISPNCGYTGS HVTIHGQHLT
801 850
ENSTTRP00000011802/1-1361 SVWHLVLSFH DGRRAVENR- CEGQLPEQHW CRLPEYVVRG PQGWVTGNLS
ENSP00000296474/1-1400 SAWHLVLSFH DGLRAVESR- CERQLPEQQL CRLPEYVVRD PQGWVAGNLS
ENSBTAP00000020028/1-1396 SAWHLTLSFH DGVRAVENR- CEGQLPEQHR CRLPEYVVRG RRGWVTGNLS
bmy_06026T0/1-950 SVWHLVLSFH DGRKAVENRQ CEGQLPEQHW CRLPEYVVRG PQGWVTGNLS
BACU002385/1-1380 SVWHLVLSFH DGHRAVENR- CEGQLPEQHW CRLPEYVVRG PQGWVTGNLS
851 900
ENSTTRP00000011802/1-1361 AQGDGAAGFT LPGFRFLAPP HPPSMDLVAL KPEEHAVKFE YIGLGAVADC
ENSP00000296474/1-1400 ARGDGAAGFT LPGFRFLPPP HPPSANLVPL KPEEHAIKFE YIGLGAVADC
ENSBTAP00000020028/1-1396 VRGDGAPGYT LPGFRFLPPP HPPSKDLAPL KPEEHAIKFE YIGLGTVADC
bmy_06026T0/1-950 AQGDGAAGFT LPGFRFLPPP HPPSMDLVPL KPEEHAIKFE YIGLGAVADC
BACU002385/1-1380 AQGDGAAGFT LPGFRFLPPP HPPSMDLVPL KPEEHAIKFE YIGLGAVADC
901 950
ENSTTRP00000011802/1-1361 VDVNVTVGGE SCQHELRGDV IVCPLPPALQ LGKDGAPLQV CVDGGCHILG
ENSP00000296474/1-1400 VGINVTVGGE SCQHEFRGDM VVCPLPPSLQ LGQDGAPLQV CVDGECHILG
ENSBTAP00000020028/1-1396 VAVNVTVSGK SCQHELRGDV VVCPLPPSLQ LGKDGAPLQV CVDGRCYTLG
bmy_06026T0/1-950 VDVNVTVGGE SCQHELRGDV IVCPLPPSLQ LGKDGAPLQV CVDGGCHILG
BACU002385/1-1380 VDVNVTVGGE SCQHELRGDV IVCPLPPSLQ LGKDGAPLQV CVDDGCHILG
951 1000
ENSTTRP00000011802/1-1361 KVVRPGLEGV PQSTLLGVLL ALLLLVAVLA TILVFSYHQ- RKQLVLSPNL
ENSP00000296474/1-1400 RVVRPGPDGV PQSTLLGILL PLLLLVAALA TALVFSYWWR RKQLVLPPNL
ENSBTAP00000020028/1-1396 KVVRPGLEGV PQSTLLGVLL ALLLLVAVLA AILVFSYRW- RKQLVLSSNL
bmy_06026T0/1-950 KVVRPGLEGV PQSTLLGVLL ALLLLVAVLA TILVFSYHQ- RKQL------
BACU002385/1-1380 KVVRPGLEGV PQSTLLGVLL ALLLLVAVLA TILVFSYHQ- RKQLVLSPNL
1001 1050
ENSTTRP00000011802/1-1361 DDLASLDRTT GAMPLPLLRS SSDYRNGLAA PAIDSRDSTT QVHRTSFSGN
ENSP00000296474/1-1400 NDLASLDQTA GATPLPILYS GSDYRSGLAL PAIDGLDSTT CVHGASFSDS
ENSBTAP00000020028/1-1396 EDLASLDRTP GAMPLPLLRS GSDYRNGLA- PPITGQDSST QVHRISSSDS
bmy_06026T0/1-950 ---------- ---------- ---------- ---------- ----------
BACU002385/1-1380 DDLASLDRTT GAMPLPLLRS SSDYRNGLAA PAIDGWDSTT QVHRASFSGN
1051 1100
ENSTTRP00000011802/1-1361 GDGSHVPLLR KESIQLGDLN SALLAEVKDV LIPHEWVVTH TDRVIGKVTF
ENSP00000296474/1-1400 EDESCVPLLR KESIQLRDLD SALLAEVKDV LIPHERVVTH SDRVIGKGHF
ENSBTAP00000020028/1-1396 GDGSRVPLLR KGSIQLGDLD SVLLSEVKDV LIPHERVVTH ADRVIGKGHF
bmy_06026T0/1-950 ---------- ---------- ------VSDS LFPEAW---- ----------
BACU002385/1-1380 GDGSHVPLLR KGSIQLGDLN SALLAEVKEV LIPHERVVTH TDRVIGKGHF
1101 1150
ENSTTRP00000011802/1-1361 GVVYHGKYDE QI---IHCAI NPLSRITEVQ EVEAFLREGL LMRSLHHPNV
ENSP00000296474/1-1400 GVVYHGEYID QAQNRIQCAI KSLSRITEMQ QVEAFLREGL LMRGLNHPNV
ENSBTAP00000020028/1-1396 GVVYHGEYKD EAQNRIHCA- ----SITEVQ EVEAFLREGL LMRRLHHPNV
bmy_06026T0/1-950 ---------- ---------- QQLCFISACR VVQ------- ----------
BACU002385/1-1380 GVVYHGEYTD EAQDQIHCAI KSLSRITEVQ EVEAFLREGL LMRSLHHPNV
1151 1200
ENSTTRP00000011802/1-1361 MALIGIVLPP EGLPRVLLPY MRHGDLLQFI RSPQRSPTVK DLISFGLQVA
ENSP00000296474/1-1400 LALIGIMLPP EGLPHVLLPY MCHGDLLQFI RSPQRNPTVK DLISFGLQVA
ENSBTAP00000020028/1-1396 LALIGIVLPP EGLPRVLLPY MRHGDLLQFI RSPQRNPTVK DLISFGLQVA
bmy_06026T0/1-950 ---------- ---------- ---------- ---------- ----------
BACU002385/1-1380 MALIGIMLPP EGLPRVLLPY MRHGDLLQFI RSPQRSPTVK DLISFGLQVA
1201 1250
ENSTTRP00000011802/1-1361 RGMAYLAEQK FVHRDLAARN CMLDESFTVK VADFGLARDV LDKEYYSVQQ
ENSP00000296474/1-1400 RSMEYLAEQK FVHRDLAARN CMLDESFTVK VADFGLARDI LDREYYSVQQ
ENSBTAP00000020028/1-1396 HGMEYLAEQK FVHRDLAARN CMLDESFTVK VADFGLARDV LDKEYYSVQQ
bmy_06026T0/1-950 ---------- -LHKQHACLS C--------- ---------- ----------
BACU002385/1-1380 RGMAYLAEQK FVHRDLAARN CMLDESFTVK VADFGLARDV LDKEYYSVQQ
1251 1300
ENSTTRP00000011802/1-1361 RRHARLPVKW MALESLQTYR FTTKSDVWSF GVLLWELLTR GAPPYPHIDP
ENSP00000296474/1-1400 HRHARLPVKW MALESLQTYR FTTKSDVWSF GVLLWELLTR GAPPYRHIDP
ENSBTAP00000020028/1-1396 HRHARLPVKW MALESLQTYR FTTKSDVWSY GVLLWELLTR GAPPYPHIDP
bmy_06026T0/1-950 ---------- ---------- ----AEVFE- ---------- ----------
BACU002385/1-1380 RRHARLPVKW MALESLQTYR FTTKSDVWSF GVLLWELLTR GAPPYPHIDP
1301 1350
ENSTTRP00000011802/1-1361 FDLMHFLAQG RRLPQPEYCP DSLYAVMQHC WAADPAARPT FGALAGDVER
ENSP00000296474/1-1400 FDLTHFLAQG RRLPQPEYCP DSLYQVMQQC WEADPAVRPT FRVLVGEVEQ
ENSBTAP00000020028/1-1396 FDLTHFLAQG RRLPQPEYCP DSLYTVMQHC WAADPMARPT FGELAGEVAL
bmy_06026T0/1-950 ---------- ---------- ---------- ---------- ----------
BACU002385/1-1380 FDLMHFLAQG RRLPQPEYCP DSLYAVMQHC WAADPAARPT FGALAGDVEC
1351 1400
ENSTTRP00000011802/1-1361 LVAALRGDHY VQLPVAYVNV GPGAPDKAEM PLE-SPSPPV HRSIG-ARPL
ENSP00000296474/1-1400 IVSALLGDHY VQLPATYMNL GPSTSHEMNV RPEQPQFSPM PGNVRRPRPL
ENSBTAP00000020028/1-1396 VVAALRGDHY VQLPVAYVNV GPGAPDKAIM PLEQSPSPTV HRSPGRPRPL
bmy_06026T0/1-950 ---------- ---------- ---------- ---------- ----------
BACU002385/1-1380 LVATLRGDHY VQLPVAYVNV GPGASDKADM PL-------- ----------
1401 1450
ENSTTRP00000011802/1-1361 SEPPKST
ENSP00000296474/1-1400 SEPPRPT
ENSBTAP00000020028/1-1396 SEPLRPT
bmy_06026T0/1-950 -------
BACU002385/1-1380 -------