KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:10:05 2014 Check: 00 .. Name: ENSTTRP00000011802/1-1361 Len: 1407 Check: 6717 Weight: 1.00 Name: ENSP00000296474/1-1400 Len: 1407 Check: 4048 Weight: 1.00 Name: ENSBTAP00000020028/1-1396 Len: 1407 Check: 6472 Weight: 1.00 Name: bmy_06026T0/1-950 Len: 1407 Check: 1489 Weight: 1.00 Name: BACU002385/1-1380 Len: 1407 Check: 7004 Weight: 1.00 // 1 50 ENSTTRP00000011802/1-1361 MELHPPPLQP FLLLLLL--- ---PAVPETG GSWQCPRXXX XXXXXXXXXX ENSP00000296474/1-1400 MELLPPLPQS FLLLLLL--- ---PAKPAAG EDWQCPRTPY AASRDFDVKY ENSBTAP00000020028/1-1396 MELHPPLFQP FLLLLLL--L PTLPAVPETG GSWQCPRIPY AASRDFAVEY bmy_06026T0/1-950 MELHPPPLQP FLLLLLL-PL PELPAVPETG GSWQCPRIPY AASRDFDVEY BACU002385/1-1380 MELHPPPLQP FLLLLLLLPL PQLPAVPETG GSWQCPRIPY AASRDFDVEY 51 100 ENSTTRP00000011802/1-1361 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000296474/1-1400 VVPSFSAGGL VQAMVTYEGD RNESAVFVAI RNRLHVLGPD LKSVQSLATG ENSBTAP00000020028/1-1396 SVPSFSPGGP VQAVATYEGG REGSAVFVAT RNRLHVLGPD LQPVESLATG bmy_06026T0/1-950 LVPSFSAGRP VQAVATYEGG REGSAVFVAT RNRLHVLGPD LQPVESLATG BACU002385/1-1380 LVPSFSAGRP VQAVATYEGG REGRAVFVAT RNRLHVLGPD LQPVESLATG 101 150 ENSTTRP00000011802/1-1361 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000296474/1-1400 PAGDPGCQTC AACGPGPHGP PGDTDTKVLV LDPALPALVS CGSSLQGRCF ENSBTAP00000020028/1-1396 PAGAPGCQTC AACGPGPHGP PGDTDTQVLV LEPALPALIS CGSSLRGRCF bmy_06026T0/1-950 PAGAPGCQTC AACGPGPHGP PGDTDAQVLV LEPVLPALIS CGSSLRGRCF BACU002385/1-1380 PAGAPGCQTC AACGPGPHGP PGDTDAQVLV LEPVLPALIS CGSSLRGRCF 151 200 ENSTTRP00000011802/1-1361 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000296474/1-1400 LHDLEPQGTA VHLAAPACLF SAHHNRPDDC PDCVASPLGT RVTVVEQGQA ENSBTAP00000020028/1-1396 LHELEPGGTA LHLAPPVCLF S-EHNRPEDC PDCVASPLGT LVTVVEQGQA bmy_06026T0/1-950 LHEIEPGGTA LHLAPPVCLF SAHHNHPEDC PDCVASPLGT LVTVVEQGHA BACU002385/1-1380 LHEIEPGGTA LHLAPPVCLF SAHHNHPEDC PDCVASPLGT LVTVVEQGHA 201 250 ENSTTRP00000011802/1-1361 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000296474/1-1400 SYFYVASSLD AAVAASFSPR SVSIRRLKAD ASGFAPGFVA LSVLPKHLVS ENSBTAP00000020028/1-1396 SYLYVASSLD SAVAASFSPL SVSIRRLKAD GSGFAAGFAA LSVLPQHLDS bmy_06026T0/1-950 SYFYVASSLD SAVAASFSPR SVSIRRLKAD ASGFAPGFAA LSVVPEHLAS BACU002385/1-1380 SYFYVASSLD SAVAASFSPR SVSIRRLKAD ASGFAPGFAA LSVVPEHLAS 251 300 ENSTTRP00000011802/1-1361 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000296474/1-1400 YSIEYVHSFH TGAFVYFLTV QPASVTDDPS ALHTRLARLS ATEPELGDYR ENSBTAP00000020028/1-1396 YRIEYVYSFH AGAFVYFLTV QPADVAAAPG TLHTRLARLS AVETDLGDYR bmy_06026T0/1-950 YRIEYVYSFR AGAFVYFLTV QPANVVDAPG TLHTRLARLS AVETDLADYR BACU002385/1-1380 YRIEYVYSFR AGAFVYFLTV QPANVVDAPG ALHTRLARLS AVETDLADYR 301 350 ENSTTRP00000011802/1-1361 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000296474/1-1400 ELVLDCRFAP KRRRRGAPEG GQPYPVLRVA HSAPVGAQLA TELSIAEGQE ENSBTAP00000020028/1-1396 ELVLHCHFAP KRRRRAAHEG GQPYPVLRAA HAAPVGGHLA AELSIPEGQE bmy_06026T0/1-950 ELVLDCRFAP KRRRRAAHKG AQPYPVLRAA HAAPVGGRLA TELSIAEGQE BACU002385/1-1380 ELVLDCRFAP KRRRRAAHEG AQPYPVLRAA HAAPVGGRLA TELSIAEGQE 351 400 ENSTTRP00000011802/1-1361 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000296474/1-1400 VLFGVFVTGK DGGPGVGPNS VVCAFPIDLL DTLIDEGVER CCESPVHPGL ENSBTAP00000020028/1-1396 VLFGVFSASR DSSPGADPNS VVCAFPVHLL DTLIEKGVEH CCEPPVPPGL bmy_06026T0/1-950 VLFGVFSASR DSXPGVDPNS VVCAFPVDLL DTLIEQGVER CCEPPVHPGL BACU002385/1-1380 VLFGVFWASR DSGPGVDPNS VVCAFPVGLL DTLIEQGVER CCEPPVHPGL 401 450 ENSTTRP00000011802/1-1361 XXXXXXXXXX XXXXXXPGLV APSPKTSCRH FPLLVSSSLL RVDLFNGLLG ENSP00000296474/1-1400 RRGLDFFQSP SFCPNPPGLE ALSPNTSCRH FPLLVSSSFS RVDLFNGLLG ENSBTAP00000020028/1-1396 RRGLDFFQLP SFCPDAPGLG ASSPNISCRH FPLLVSGNLL RVDLFNGLLG bmy_06026T0/1-950 RRGLDFFQLP SFCPDP---- -----VSRKK GPSL------ ---------- BACU002385/1-1380 RRGLDFFQLP SFCPDPPGLV APSPKTSCRH FPLLVSSSLL RVDLFNGLLG 451 500 ENSTTRP00000011802/1-1361 PAQVTALHVT RLNNVTVAHM GTADGRILQV ELARSLNYLL YVSNFSLGSN ENSP00000296474/1-1400 PVQVTALYVT RLDNVTVAHM GTMDGRILQV ELVRSLNYLL YVSNFSLGDS ENSBTAP00000020028/1-1396 PVEVTALYVT RLDNVTVAHM GTADGRILQV ELARSLNYLL YVSNFSLGSN bmy_06026T0/1-950 ---------- ---------- ---------V ELARSLNYLL YVSNFSLGSN BACU002385/1-1380 PAQVTALHVT RLDNVTVAHM GTADGRILQV ELARSLNYLL YVSNFSLGSN 501 550 ENSTTRP00000011802/1-1361 GQPVHRDVSR LGDHLLFASG DQVFQVPIQG PGCR------ ------RFMG ENSP00000296474/1-1400 GQPVQRDVSR LGDHLLFASG DQVFQVPIQG PGCRHFLTCG RCLRAWHFMG ENSBTAP00000020028/1-1396 GQPVHRDVRR LGDHLLFASG DQVFQVPIRG PGCRHFLTCG RCLRAQRFMG bmy_06026T0/1-950 GQPVHRDVSR LGDHLLFASG DQV---PIQG PGCRHFLTCG RCLRAQRFMG BACU002385/1-1380 GQPVHRDVSR LGDHLLFASG DQVFQVPIQG PGCRHFLTCG RCLRAQRFMG 551 600 ENSTTRP00000011802/1-1361 CGWGA----- ---------- ------LIAF SPHSGPLRGS TRLTLCGSNF ENSP00000296474/1-1400 CGWCGNMCGQ QKECPGSWQQ DHCPPKLTEF HPHSGPLRGS TRLTLCGSNF ENSBTAP00000020028/1-1396 CGWCGGMCGR QKECPGSWQQ DYCPPVLTEF YPRSGPLRGS TRLTLCGSNF bmy_06026T0/1-950 CGWCGGMCGR QKECPGSWQQ DHCPPELTK- ---------- ---------V BACU002385/1-1380 CGWCGGMCGR QKECPGSWQQ DHCPPELTKF SPHTGPLRGS TRLTLCGSNF 601 650 ENSTTRP00000011802/1-1361 YLHPPGLVPE GTHQVTVGQS PCRLLLKGNS NLXXXXXXXX XXXXXXXXXX ENSP00000296474/1-1400 YLHPSGLVPE GTHQVTVGQS PCRPLPKDSS KLRPVPRKDF VEEFECELEP ENSBTAP00000020028/1-1396 YLYPSGLVPE GTHQVTVGRS PCRLLPKGNS DLSRLPRKDF IEDFECELEP bmy_06026T0/1-950 WLAWQG---T GTHQVTVGQS PCRLLLKGNS NLSQVPRKDF VEELECELEP BACU002385/1-1380 YLHPPGLVPE GTHQVTVGQS PCRLLLKGNS NLSQVPRKDF VEELECELEP 651 700 ENSTTRP00000011802/1-1361 XXXXXXGPAN VSLTVTNMPL GKHFRVDGTS MLRGFSFMEP VLTAVQPLFG ENSP00000296474/1-1400 LGTQAVGPTN VSLTVTNMPP GKHFRVDGTS VLRGFSFMEP VLIAVQPLFG ENSBTAP00000020028/1-1396 LSTQVAGPAN VSLTVTNMPL GRHFRVEGTS MLGGFSFMEP VLTAVRPFFG bmy_06026T0/1-950 LGTQEAGPAN ISLTVNNMPL GKHFRVDGTS MLRGFSFMEP MLTAVQPLFG BACU002385/1-1380 LGTQEAGPAN VSLTVNNMPL GKHFRVDGTS MLRGFSFMEP MLTAVQPLFG 701 750 ENSTTRP00000011802/1-1361 PRAGGTCLTL EGQGLSVGTS RAVLVNGTEC LLKRVSEGQL LCTTPPGAAT ENSP00000296474/1-1400 PRAGGTCLTL EGQSLSVGTS RAVLVNGTEC LLARVSEGQL LCATPPGATV ENSBTAP00000020028/1-1396 PRAGGTCLTL EGRGLSIGTS QTVLVNGTEC PLKQVSEGQL LCTTPPGAAT bmy_06026T0/1-950 PRAGGTCLTL EGQGLSVGTS RAVLVNGTEC LLKRVSEGQL LCTTPPGAAT BACU002385/1-1380 PQAGGTCLTL EGQGLSVGTS RAVLVNGTEC LLKRVSEGQL LCTTPPGAAT 751 800 ENSTTRP00000011802/1-1361 ARVPIRLQVG GAEVPGSWNF HYQEDPIMLG ISPNCGYTGS HVTIHGQHLT ENSP00000296474/1-1400 ASVPLSLQVG GAQVPGSWTF QYREDPVVLS ISPNCGYINS HITICGQHLT ENSBTAP00000020028/1-1396 ASVPIRLQVG GAEVPGSWNF HYREDPIVLG ISPKCGYTGS HVTIRGQHLT bmy_06026T0/1-950 ARVPIRLQVG GAEVPGSWNF HYQEDPIMLG ISPNCGYTGS HVTIHGQHLT BACU002385/1-1380 ARVPIRLQVG GAEVPGSWNF HYQEDPIMLG ISPNCGYTGS HVTIHGQHLT 801 850 ENSTTRP00000011802/1-1361 SVWHLVLSFH DGRRAVENR- CEGQLPEQHW CRLPEYVVRG PQGWVTGNLS ENSP00000296474/1-1400 SAWHLVLSFH DGLRAVESR- CERQLPEQQL CRLPEYVVRD PQGWVAGNLS ENSBTAP00000020028/1-1396 SAWHLTLSFH DGVRAVENR- CEGQLPEQHR CRLPEYVVRG RRGWVTGNLS bmy_06026T0/1-950 SVWHLVLSFH DGRKAVENRQ CEGQLPEQHW CRLPEYVVRG PQGWVTGNLS BACU002385/1-1380 SVWHLVLSFH DGHRAVENR- CEGQLPEQHW CRLPEYVVRG PQGWVTGNLS 851 900 ENSTTRP00000011802/1-1361 AQGDGAAGFT LPGFRFLAPP HPPSMDLVAL KPEEHAVKFE YIGLGAVADC ENSP00000296474/1-1400 ARGDGAAGFT LPGFRFLPPP HPPSANLVPL KPEEHAIKFE YIGLGAVADC ENSBTAP00000020028/1-1396 VRGDGAPGYT LPGFRFLPPP HPPSKDLAPL KPEEHAIKFE YIGLGTVADC bmy_06026T0/1-950 AQGDGAAGFT LPGFRFLPPP HPPSMDLVPL KPEEHAIKFE YIGLGAVADC BACU002385/1-1380 AQGDGAAGFT LPGFRFLPPP HPPSMDLVPL KPEEHAIKFE YIGLGAVADC 901 950 ENSTTRP00000011802/1-1361 VDVNVTVGGE SCQHELRGDV IVCPLPPALQ LGKDGAPLQV CVDGGCHILG ENSP00000296474/1-1400 VGINVTVGGE SCQHEFRGDM VVCPLPPSLQ LGQDGAPLQV CVDGECHILG ENSBTAP00000020028/1-1396 VAVNVTVSGK SCQHELRGDV VVCPLPPSLQ LGKDGAPLQV CVDGRCYTLG bmy_06026T0/1-950 VDVNVTVGGE SCQHELRGDV IVCPLPPSLQ LGKDGAPLQV CVDGGCHILG BACU002385/1-1380 VDVNVTVGGE SCQHELRGDV IVCPLPPSLQ LGKDGAPLQV CVDDGCHILG 951 1000 ENSTTRP00000011802/1-1361 KVVRPGLEGV PQSTLLGVLL ALLLLVAVLA TILVFSYHQ- RKQLVLSPNL ENSP00000296474/1-1400 RVVRPGPDGV PQSTLLGILL PLLLLVAALA TALVFSYWWR RKQLVLPPNL ENSBTAP00000020028/1-1396 KVVRPGLEGV PQSTLLGVLL ALLLLVAVLA AILVFSYRW- RKQLVLSSNL bmy_06026T0/1-950 KVVRPGLEGV PQSTLLGVLL ALLLLVAVLA TILVFSYHQ- RKQL------ BACU002385/1-1380 KVVRPGLEGV PQSTLLGVLL ALLLLVAVLA TILVFSYHQ- RKQLVLSPNL 1001 1050 ENSTTRP00000011802/1-1361 DDLASLDRTT GAMPLPLLRS SSDYRNGLAA PAIDSRDSTT QVHRTSFSGN ENSP00000296474/1-1400 NDLASLDQTA GATPLPILYS GSDYRSGLAL PAIDGLDSTT CVHGASFSDS ENSBTAP00000020028/1-1396 EDLASLDRTP GAMPLPLLRS GSDYRNGLA- PPITGQDSST QVHRISSSDS bmy_06026T0/1-950 ---------- ---------- ---------- ---------- ---------- BACU002385/1-1380 DDLASLDRTT GAMPLPLLRS SSDYRNGLAA PAIDGWDSTT QVHRASFSGN 1051 1100 ENSTTRP00000011802/1-1361 GDGSHVPLLR KESIQLGDLN SALLAEVKDV LIPHEWVVTH TDRVIGKVTF ENSP00000296474/1-1400 EDESCVPLLR KESIQLRDLD SALLAEVKDV LIPHERVVTH SDRVIGKGHF ENSBTAP00000020028/1-1396 GDGSRVPLLR KGSIQLGDLD SVLLSEVKDV LIPHERVVTH ADRVIGKGHF bmy_06026T0/1-950 ---------- ---------- ------VSDS LFPEAW---- ---------- BACU002385/1-1380 GDGSHVPLLR KGSIQLGDLN SALLAEVKEV LIPHERVVTH TDRVIGKGHF 1101 1150 ENSTTRP00000011802/1-1361 GVVYHGKYDE QI---IHCAI NPLSRITEVQ EVEAFLREGL LMRSLHHPNV ENSP00000296474/1-1400 GVVYHGEYID QAQNRIQCAI KSLSRITEMQ QVEAFLREGL LMRGLNHPNV ENSBTAP00000020028/1-1396 GVVYHGEYKD EAQNRIHCA- ----SITEVQ EVEAFLREGL LMRRLHHPNV bmy_06026T0/1-950 ---------- ---------- QQLCFISACR VVQ------- ---------- BACU002385/1-1380 GVVYHGEYTD EAQDQIHCAI KSLSRITEVQ EVEAFLREGL LMRSLHHPNV 1151 1200 ENSTTRP00000011802/1-1361 MALIGIVLPP EGLPRVLLPY MRHGDLLQFI RSPQRSPTVK DLISFGLQVA ENSP00000296474/1-1400 LALIGIMLPP EGLPHVLLPY MCHGDLLQFI RSPQRNPTVK DLISFGLQVA ENSBTAP00000020028/1-1396 LALIGIVLPP EGLPRVLLPY MRHGDLLQFI RSPQRNPTVK DLISFGLQVA bmy_06026T0/1-950 ---------- ---------- ---------- ---------- ---------- BACU002385/1-1380 MALIGIMLPP EGLPRVLLPY MRHGDLLQFI RSPQRSPTVK DLISFGLQVA 1201 1250 ENSTTRP00000011802/1-1361 RGMAYLAEQK FVHRDLAARN CMLDESFTVK VADFGLARDV LDKEYYSVQQ ENSP00000296474/1-1400 RSMEYLAEQK FVHRDLAARN CMLDESFTVK VADFGLARDI LDREYYSVQQ ENSBTAP00000020028/1-1396 HGMEYLAEQK FVHRDLAARN CMLDESFTVK VADFGLARDV LDKEYYSVQQ bmy_06026T0/1-950 ---------- -LHKQHACLS C--------- ---------- ---------- BACU002385/1-1380 RGMAYLAEQK FVHRDLAARN CMLDESFTVK VADFGLARDV LDKEYYSVQQ 1251 1300 ENSTTRP00000011802/1-1361 RRHARLPVKW MALESLQTYR FTTKSDVWSF GVLLWELLTR GAPPYPHIDP ENSP00000296474/1-1400 HRHARLPVKW MALESLQTYR FTTKSDVWSF GVLLWELLTR GAPPYRHIDP ENSBTAP00000020028/1-1396 HRHARLPVKW MALESLQTYR FTTKSDVWSY GVLLWELLTR GAPPYPHIDP bmy_06026T0/1-950 ---------- ---------- ----AEVFE- ---------- ---------- BACU002385/1-1380 RRHARLPVKW MALESLQTYR FTTKSDVWSF GVLLWELLTR GAPPYPHIDP 1301 1350 ENSTTRP00000011802/1-1361 FDLMHFLAQG RRLPQPEYCP DSLYAVMQHC WAADPAARPT FGALAGDVER ENSP00000296474/1-1400 FDLTHFLAQG RRLPQPEYCP DSLYQVMQQC WEADPAVRPT FRVLVGEVEQ ENSBTAP00000020028/1-1396 FDLTHFLAQG RRLPQPEYCP DSLYTVMQHC WAADPMARPT FGELAGEVAL bmy_06026T0/1-950 ---------- ---------- ---------- ---------- ---------- BACU002385/1-1380 FDLMHFLAQG RRLPQPEYCP DSLYAVMQHC WAADPAARPT FGALAGDVEC 1351 1400 ENSTTRP00000011802/1-1361 LVAALRGDHY VQLPVAYVNV GPGAPDKAEM PLE-SPSPPV HRSIG-ARPL ENSP00000296474/1-1400 IVSALLGDHY VQLPATYMNL GPSTSHEMNV RPEQPQFSPM PGNVRRPRPL ENSBTAP00000020028/1-1396 VVAALRGDHY VQLPVAYVNV GPGAPDKAIM PLEQSPSPTV HRSPGRPRPL bmy_06026T0/1-950 ---------- ---------- ---------- ---------- ---------- BACU002385/1-1380 LVATLRGDHY VQLPVAYVNV GPGASDKADM PL-------- ---------- 1401 1450 ENSTTRP00000011802/1-1361 SEPPKST ENSP00000296474/1-1400 SEPPRPT ENSBTAP00000020028/1-1396 SEPLRPT bmy_06026T0/1-950 ------- BACU002385/1-1380 -------