KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:10:07 2014 Check: 00 .. Name: ENSP00000465759/1-1230 Len: 1307 Check: 6002 Weight: 1.00 Name: ENSTTRP00000010750/1-1225 Len: 1307 Check: 660 Weight: 1.00 Name: ENSBTAP00000020034/1-1221 Len: 1307 Check: 5805 Weight: 1.00 Name: bmy_06635T0/1-991 Len: 1307 Check: 5424 Weight: 1.00 Name: BACU006546/1-1130 Len: 1307 Check: 1234 Weight: 1.00 // 1 50 ENSP00000465759/1-1230 MSALCWGRGA AGLKRALRPC GRPGLPGKEG ---------- ---------- ENSTTRP00000010750/1-1225 MSAVRWGRGA AGFGRALWPA GTPGLLAEEX ---------- ---------- ENSBTAP00000020034/1-1221 MSALRCGRRA AGLRRALWPK GHPCFLAEEG ---------- ---------- bmy_06635T0/1-991 MSAVRWGRGA AGFGRALWPA GPPGLLAEEA ---------- ---------- BACU006546/1-1130 MSAVRWGRGA AGCGRALWPV GPPGLLAEEG HAGGLSAVRW GRGAAGFGRA 51 100 ENSP00000465759/1-1230 ---------- ----TAGGVC GPRRSSSASP QEQDQDRRKD WGHVELLEVL ENSTTRP00000010750/1-1225 ---------- --XXXXXXXX XXXXXXXXXX XX--XXXXXX XXXXXXXXXL ENSBTAP00000020034/1-1221 ---------- ----TLGGVW GRKRSLSASA CE--QDRRKG CGHAELLEVL bmy_06635T0/1-991 -------SLV SPAGALGGVW GRNRSSTASP CE--QDRRKD WGHAELLE-- BACU006546/1-1130 LWPAGPPGLL AEEGALGGVW GRKRSSTASP CE--QDRRKD WGHAELLEVL 101 150 ENSP00000465759/1-1230 QARVRQLQAE SVSEVVVNRV DVARLPECGS GDGSLQPPRK VQMGAKDATP ENSTTRP00000010750/1-1225 KARVRQLQAE GMAEVTVKRV Q-----EGGR GAGGAQPPRQ APAGAKGAAP ENSBTAP00000020034/1-1221 EARVRQLQAE GTAEEVMVK- --RVAMAQAP EAGGIWPPRQ APVGAEGAAP bmy_06635T0/1-991 ---------- ---------- ---------- ---GPHP--- ---------- BACU006546/1-1130 KARVRQLQAE GWAEVTVKRV AKRVAVARAP EAGGAQPPRQ AQAGAEGAAP 151 200 ENSP00000465759/1-1230 VP-CGRWAKI LEKDKRTQQM RMQRLKAKLQ MPFQSGEFKA LTRRLQVEPR ENSTTRP00000010750/1-1225 PPQSSRWAQN LDSDQQXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000020034/1-1221 VL-SSHWVQK LDKDQQLIEK RLQQLEGKLP KIVEKSTWE- --KRLRMEPR bmy_06635T0/1-991 ---------- ---------- ---------- ---------- ---------- BACU006546/1-1130 ML-SSRWAQK LDDDQRLMER RKQRLEGKLQ KHVE------ ---------- 201 250 ENSP00000465759/1-1230 LLSKQMAGCL EDCTRQAPES PWEEQLARLL QEAPGKLSLD VEQAPSGQHS ENSTTRP00000010750/1-1225 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000020034/1-1221 LLSRKLAGQL QQWERKRPQS PWEEQLARLL QEAPKKLSRE ADEG-----S bmy_06635T0/1-991 ---------- ---------- ---------- ---------- ---------- BACU006546/1-1130 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000465759/1-1230 QAQLSGQQQR LLAFFKCCLL TDQLPLAHHL LVVHHGQRQK RKLLTLDMYN ENSTTRP00000010750/1-1225 XXXXXXXXXX XXXXXXXXXX XXXXXLAHHV LVTHHSKSQQ QRLLTLSMYN ENSBTAP00000020034/1-1221 ESRLEGQRQK LLAFLECCLL TGHLPLAHHV LVAQHSRAPQ QQLLTLPMYN bmy_06635T0/1-991 ---------- ---------- ---------- ---------- ---------- BACU006546/1-1130 ---------- -----KCCLL TGNLPLAHHV LVTHHSKSQQ QRLLTLSMYN 301 350 ENSP00000465759/1-1230 AVMLGWARQG AFKELVYVLF MVKDAGLTPD LLSYAAALQC MGRQDQDAGT ENSTTRP00000010750/1-1225 MVMLGWARQG SFKELTYVFF MLKDAGLAPD LQSYAAALQC MGRLDQDAGT ENSBTAP00000020034/1-1221 TVMLGWARQG SFKELMYVFF MLKDAGLAPD LLSYAAALQC MGRLDQDAGT bmy_06635T0/1-991 ----AWFPQG SFKELTYVFF MLKDAGLAPD LRSYAAALQC MGRLDQDAGT BACU006546/1-1130 MVMLGWARQG SFKELTYVFF MLKDAGLAPD LRSYAAALLC VGRLDQAAGA 351 400 ENSP00000465759/1-1230 IERCLEQMSQ EGLKLQALFT AVLLSEEDRA TVLKAVHKVK PTFSLPPQLP ENSTTRP00000010750/1-1225 IRRCLKQMAQ DGLQLQGLFT AVPLSAEERA ELLRAVRKAK PAFTPPRPPV ENSBTAP00000020034/1-1221 IRRCLKQMEQ DGLSLQGLFS AVPLSTEERE ELLRAVRKAR PAFSPQPPPP bmy_06635T0/1-991 IRRCLKQMAQ DGLQLQGLFT AVPLSAEERA ELLRAVRKAK PAFTPPRPPV BACU006546/1-1130 ARRCLKQMAQ DGLQLQGLLT AVPLSAEERA ELLRA----- ---------- 401 450 ENSP00000465759/1-1230 PP--VNTSKL LRDVYAKDGR VSYPKLHLPL KTLQCLFEKQ LHMELASRVC ENSTTRP00000010750/1-1225 PPPQVNTSPL LREIYAKDPA VSYPRLHLSL KELQGLFQQQ LRVEMATTIT ENSBTAP00000020034/1-1221 PPPQVNTSPL LQEIYAKDPS VSYPKLHLSL KELQGLFRQQ LGVEMATTVT bmy_06635T0/1-991 PPPQVNTSPL LREIYAKDPT VSYPRLHLSL KELQGLFRQQ LRVEMATTVT BACU006546/1-1130 ----VNTSPL LREIYAKDPT VSYPRLHLSL KELQGLFRQQ LRVEMATTVT 451 500 ENSP00000465759/1-1230 VVSVEKPTLP SKEVKHARKT LKTLRDQWEK ALCRALRETK NRLEREVYEG ENSTTRP00000010750/1-1225 VESVEKVPLL TKEVLHARKT LAGLRTRWRT ALYRELQETK ESEAHAAREG ENSBTAP00000020034/1-1221 VESVEKAPLL TEEVLQARKT LAALRAEWES VLSLELQETK ESEARAAAEG bmy_06635T0/1-991 VGSVEKVPLL TKEVLHARKT LAGLRTRWRT ALYRELQETK ESEAHAAREG BACU006546/1-1130 MESVEKVPLL TKEVLHARKT LAGLRTRWRT ALYRELQETK ESEAHAAREG 501 550 ENSP00000465759/1-1230 RFSLYPFLCL LDEREVVRML ---------- ---------- ---------- ENSTTRP00000010750/1-1225 RLSLFPYLCL LSEKEVVRML ---------- ---------- ---------- ENSBTAP00000020034/1-1221 RPSLFPYLCL LSEKELVGLL ---------- ---------- ---------- bmy_06635T0/1-991 RLSLFPYLCL LSEKEIVGML LQVRTGPGGG AAVGVPVGST WSAGLMALAA BACU006546/1-1130 RLSLFPYLCL LSEKEIVGML ---------- ---------- ---------- 551 600 ENSP00000465759/1-1230 LQVLQALPAQ GESFTTLARE LSARTFSRHV VQRQRVSGQV QALQNHYRKY ENSTTRP00000010750/1-1225 LQTLQALPAQ GESLLFLAHE LGLRVF---- -KRKQLRNEV QELEQRYSKY ENSBTAP00000020034/1-1221 LQTLQALPSH GESLFFLAHE LGVRVL---- -KRKRLRNQV EELEQRYFEY bmy_06635T0/1-991 LQTLQALPAQ GESLLFLAHE LGLRVF---- -KRKQLRNEV QELEQRYSKY BACU006546/1-1130 LQTLQALPAQ GESLLFLAHE LGLRVF---- -KRKQLRNEV QELEQRYSKY 601 650 ENSP00000465759/1-1230 LCLLASDAEV PEPCLPRQYW EELGAPEALR EQPWPLPVQM ELGKLLAEML ENSTTRP00000010750/1-1225 LHLLASDTQV AEPCLPRQHW EALGVPEAPH EQPWPMSVVV QLGKQLAEVL ENSBTAP00000020034/1-1221 LHLLASDTQV AEPCLPRQHW EALGVPEAPP EQPWPVSVLV QLGKQLAEVL bmy_06635T0/1-991 LHLLASDTQV AEPCLPRQHW EALGVPEAPH EQPWPMSVVV QLGKQLAEVL BACU006546/1-1130 LHLLASDTQV AEPCLPRQHW EALGVPEAPH EQPWPMSVVV QLGKQLAEVL 651 700 ENSP00000465759/1-1230 VQATQMPCSL DKPHRSSRLV PVLYHVYSFR NVQQIGILKP HPAYVQLLEK ENSTTRP00000010750/1-1225 VRAAQMPSSL AAPRSPGTLI PVLYHVYSFR SSAXXXXXXX XXXXXXXXXX ENSBTAP00000020034/1-1221 VRAVQMPSSL AAPRGPSTLI PVLYHVYSFR SFRQIGILKP HPAFTQLQET bmy_06635T0/1-991 VRAAQMPSSL AAPRSPGTLI PVLYHVYSFR SFRQIGILKP HPAFTQLLET BACU006546/1-1130 VRAAQMPSSL AAPRSPGTLI PVLYHVYSFR SFRQIGILKP HPAFTQLLET 701 750 ENSP00000465759/1-1230 AAEPTLTFEA VDVPMLCPPL PWTSPHSGAF LLSPTKLMRT VEGATQHQEL ENSTTRP00000010750/1-1225 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000020034/1-1221 AAERTLIFES TEVPMLCPPL PWTSPHSGAF LLSPTKMMRS LEGTQQHQLL bmy_06635T0/1-991 AAERTLTFES TDVPMLCPPL PWTSPHSGAF LLSPTKMMRS VEGSQQHQLL BACU006546/1-1130 AAERTLTFES TDVPML---- ---------- ---PTKMMRS VEGSQQHQLL 751 800 ENSP00000465759/1-1230 LETCPPTALH GALDALTQLG N--CAWRVNG RVLDLVLQLF QAKGCPQLGV ENSTTRP00000010750/1-1225 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXLVLQLF ADKGCPRLSV ENSBTAP00000020034/1-1221 LERCPPAELH GALDALTQLG N--CAWRVNG RVLDLVLDLF RDKGCPRLGV bmy_06635T0/1-991 LERCPPAELH GALDALTQLG N--CAWRVNG RVLDLVLELF TDKGCPRLGV BACU006546/1-1130 LERCPPAELH GALDALTQLG N--CAWRVNG RILDLVLELF TDKGCPRLGV 801 850 ENSP00000465759/1-1230 PAPPSEAPQP PEAH------ LPHSAAPARK AELRRELAHC QKVAREMHSL ENSTTRP00000010750/1-1225 PAPPSEAPRP PEGR------ LLPEVSPAEK AEMRRELARR LKVAREMQSL ENSBTAP00000020034/1-1221 PAPPTEAPRP PEGRQTPKGC LLPEASPADK AEMRRELARR LKVAREMQSL bmy_06635T0/1-991 PAPPSEAPRP PEGRQAPKGC LLPEVSPAEK AEMRRELARR LKVAREMQSL BACU006546/1-1130 PAPPSEAPRP PEGRQAPKGC LLPEVSPAEK AEMRRELARR LKVAREMQSL 851 900 ENSP00000465759/1-1230 RAEALYRLSL AQHLRDRVFW LPHNMDFRGR TYPCPPHFNH LGSDVARALL ENSTTRP00000010750/1-1225 RADALYRLSL ARHLRHRVFW LPHNMDFRGR TYPCSPHFNH LGSDLARALL ENSBTAP00000020034/1-1221 RADALYRLSL AQHLRNHVFW LPHNMDFRGR TYPCSPHFNH LGSDLARALL bmy_06635T0/1-991 RADALYRLSL AQHLRHRVFW LPHNMDFRGR TYPCSPHFNH LGSDLARALL BACU006546/1-1130 RADALYRLSL AQHLRHRVFW LPHNMDFRGR TYPCSPHFNH LGSDLARALL 901 950 ENSP00000465759/1-1230 EFAQGRPLGP HGLDWLKIHL VNLTGLKKRE PLRKRLAFAE EVMDDILDSA ENSTTRP00000010750/1-1225 EFAQGRPLGP HGLNWLKIHL VNLTGLKKRE SLQARRDYAD ELMEDILDSA ENSBTAP00000020034/1-1221 EFAQGRPLGP HGLDWLKIHL INLTGLKKRE SLQTRRDYAD AVMEDILDSA bmy_06635T0/1-991 EFAQGRPLGP HGLNWLKIHL VNLTGFKKRE SLQARRDYAD ELMEDILDSA BACU006546/1-1130 EFAQGRPLGP HGLDWLKIHL VNLTGLKKRE SLQARRDYAD ELMEDILDSA 951 1000 ENSP00000465759/1-1230 DQPLTGRKWW MGAEEPWQTL ACCMEVANAV RASDPAAYVS HLPVHQDGSC ENSTTRP00000010750/1-1225 DRPMTGRKWW MEADEPWQAL ACCMEVARAV RAPDPAAYVS HFPVHQDGSC ENSBTAP00000020034/1-1221 ERPMTGRKWW MEADEPWQTL ACCMEIAQVV HSPDPTTYIS HFPVHQDGSC bmy_06635T0/1-991 DQPMTGRKWW MEADEPWQAL ACCMEVAQAV RAPDPTAYVS HFPVHQDGSC BACU006546/1-1130 DRPMTGRKWW MEADEPWQTL ACCMEVAQAV RAPDPTVYVS HFPVHQDGSC 1001 1050 ENSP00000465759/1-1230 NGLQHYAALG RDSVGAASVN LEPSDVPQDV YSGVAAQVEV FRRQDAQRGM ENSTTRP00000010750/1-1225 NGLQHYAALG RDSVGAASVN LXXXXXXXXX XXXXXXXVEV FRRQDAEQGV ENSBTAP00000020034/1-1221 NGLQHYAALG RDSTGATSVN LSPSDLPQDV YSEVAAQVEV FRRQDAKQGV bmy_06635T0/1-991 NGLQHYAALG RDSVGAASVN LLPLDLPQDV YSEVAAQVEV FRRQDAEQGV BACU006546/1-1130 NGLQHYAALG RDSVGAASVN LLPLDLPQDV YSEVAAQVEV FRRQDAEQGV 1051 1100 ENSP00000465759/1-1230 RVAQVLEGFI TRKVVKQTVM TVVYGVTRYG GRLQIEKRLR ELSDFPQEFV ENSTTRP00000010750/1-1225 QVAQVLEGFI SRKVVKQTVM TVVYGVTRYG GRLQIEKRLR EIHDFPQDFV ENSBTAP00000020034/1-1221 RVAQVLEGFI SRKVVKQTVM TVVYGVTRYG GRLQIEKRLR ELEDFPQEFV bmy_06635T0/1-991 RVAQVLEGFI SRKVVKQTVM TVVYGVTRYG GRLQIEKRLR EIHDFPQDFV BACU006546/1-1130 RVAQVLEGFI SRKVVKQTVM TVVYGVTRYG GRLQIEKRLR EIHDFPQDFV 1101 1150 ENSP00000465759/1-1230 WEASHYLVRQ VFKSLQEMFS GTRAIQHWLT ESARLISHMG SVVEWVTPLG ENSTTRP00000010750/1-1225 WEASHYLVRQ VFNSLQEMFS GTRSIQRWLT ESARLISHTG SAVEWVTPLG ENSBTAP00000020034/1-1221 WEASHYLVRQ VFNSLQEMFS GTRSIQRWLT ESARLISLTG SAVEWITPLG bmy_06635T0/1-991 WEASHYLVRQ VFNSLQEMFS GTRSIQRWLT ESARLISHTG SAVEWVTPLG BACU006546/1-1130 WEASHYLVRQ VFNSLQEMFS GTRSIQRWLT ESARLISHTG SAVEWVTPLG 1151 1200 ENSP00000465759/1-1230 VPVIQPYRLD SKVKQIGGGI QSITYTHNGD ISRKPNTRKQ KNGFPPNFIH ENSTTRP00000010750/1-1225 IPIIQPYHRD SKVMQIKGGL QSLTFSSSVD TSQKPNTLKQ KNGFPPNFIH ENSBTAP00000020034/1-1221 VPIIQPYHRD SKVM-IKGGL QSLTFSSSVD TNQKPNTLKQ KNGFPPNFIH bmy_06635T0/1-991 IPIIQPYHRD SKVM-IKGGL QSLTFSSSVD TSQKPNTLKQ KNGFPPNFIH BACU006546/1-1130 IPVIQPYHRD SKVM------ ---------- ----PNTLKQ KNGFPPNFIH 1201 1250 ENSP00000465759/1-1230 SLDSSHMMLT ALHCYRKGLT FVSVHDCYWT HAADVSVMNQ VCREQFVRLH ENSTTRP00000010750/1-1225 SLDSSHMMLT ALHCYX--XX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000020034/1-1221 SLDSTHMMLT ALYCYRKGLT FVSVHDCFWT HAADVGVMNQ VCREQFVRLH bmy_06635T0/1-991 SLDSSHMMLT ALHCYR---- ---------- ---------- -CTR------ BACU006546/1-1130 SLDSSHMMLT ALHCYRKGLT FVSVHDCFWT HAADVAVMNQ VCREQFVRLH 1251 1300 ENSP00000465759/1-1230 SEPILQDLSR FLVKRFCSEP Q--KILEASQ LKETLQAVPK PGAFDLEQVK ENSTTRP00000010750/1-1225 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXTFNLEQVK ENSBTAP00000020034/1-1221 SQPILHDLSR FLIKRFCSDS RTSKSMWVSR LKDTLLSVPP TGTFDLDQVK bmy_06635T0/1-991 ---------- ------AGDP AVGAARW--- ---------- ---------- BACU006546/1-1130 SQPILHNLSR FLIKRFCSDP RTSKSIWVSR LMDTLLAEPK AGTFNLEQVK 1301 1350 ENSP00000465759/1-1230 RSTYFFS ENSTTRP00000010750/1-1225 HSRYLFS ENSBTAP00000020034/1-1221 RSTFFFS bmy_06635T0/1-991 ------- BACU006546/1-1130 HSTYFFS