KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:10:08 2014 Check: 00 .. Name: ENSP00000334650/1-384 Len: 451 Check: 6536 Weight: 1.00 Name: ENSBTAP00000020046/1-383 Len: 451 Check: 1994 Weight: 1.00 Name: ENSTTRP00000004968/1-377 Len: 451 Check: 314 Weight: 1.00 Name: bmy_08173T0/1-340 Len: 451 Check: 3338 Weight: 1.00 Name: BACU004687/1-380 Len: 451 Check: 5009 Weight: 1.00 // 1 50 ENSP00000334650/1-384 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000020046/1-383 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004968/1-377 ---------- ---------- ---------- ---------- ---------- bmy_08173T0/1-340 GARYLRNSQE LNAQGVPPAS QVLGGSSGTI HLALEPGHSR GTPPPPPGGT BACU004687/1-380 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000334650/1-384 ---------- -------MEV SGHPQARRCC PEALGKLFPG LCFLCFLVTY ENSBTAP00000020046/1-383 ---------- --PTAGRMEA AGLPQAKSCF WEALEKLFPR LCFLCSLVTY ENSTTRP00000004968/1-377 ---------- -------MEA AGPPQDRRCC WEALRKIFPR LCFHCSLVTY bmy_08173T0/1-340 SGLLPLPAAP VLPTPGRMEA AGPPQDRRCC WEALKKIFPR LCFHCSPVTY BACU004687/1-380 ---------- -------MEA AGPPQDRRCC WEALKKIFPR LCFHCSLVTY 101 150 ENSP00000334650/1-384 ALVGAVVFSA IEDGQVLVAA DDGEFEKFLE ELCRILNCSE TVVEDRKQDL ENSBTAP00000020046/1-383 ALVGAAVFSA IEGSQDL-RA EDPEFEEFLE KLCGILKCNS TVEEGRKRDL ENSTTRP00000004968/1-377 ALVGAALFSA IEGSQDL-GA DDPEFEEFLE KLCDILKCNR TVEEGRKRGL bmy_08173T0/1-340 ALVGAALFSA TEGSQDL-GA DDPEFEEFLE KLCDILKCNR TVEEGRKRDL BACU004687/1-380 ALVGAALFSA IEGSQDL-GA DDPEFEEFLE KLCDILKCNR TVEEGRKRDL 151 200 ENSP00000334650/1-384 QGHLQKVKPQ WFNRTTHWSF LSSLFFCCTV FSTVGYGYIY PVTRLGKYLC ENSBTAP00000020046/1-383 EKLLQKVKPQ WFSRSADWSF LSSLFFCCMV ISTVGYSHIY PVTRLGKYLC ENSTTRP00000004968/1-377 GKLLQKVKPQ WFSGSADRSF LSSLFFCCTV GKSRGYGNAC PVTRLGKHLC bmy_08173T0/1-340 GKLLQKVKPQ WFSG------ ---------- ---------- ----LGKYLC BACU004687/1-380 GKLLQKVKPQ WFSGSADWSF LSSLIFCCTF ISTVGCGNTY PVTRLGEYLC 201 250 ENSP00000334650/1-384 MLYALFGIPL MFLVLTDTGD ILATILSTSY NRFRKFPFFT RPLLSKWCPK ENSBTAP00000020046/1-383 MLYALFGIPL MFLVLSDTGD ILATILSTSY NQFRRFPFLP TP-LPKWCSG ENSTTRP00000004968/1-377 VLCALFGVPL MFLVLSDTGD ILATILSMSY HQFQKL-LSP SP-LPKWRSG bmy_08173T0/1-340 MLYALFGIPL MFLVLTDTGD ILATILAMSY HQFQKLPFLP PP-LPKWXSR BACU004687/1-380 MLCALLGIPV MFLVLTDTGD ILAAILAMSY HQFQKLPFLP PP-LPKWHSG 251 300 ENSP00000334650/1-384 SLFKKKPDPK PADEAVPQII ISAEELPGPK LGTCPSRPSC SMELFERSHA ENSBTAP00000020046/1-383 RPSKRRPDSC PADEDVPHVV IHDPELPAPK --PAPAAPSS NMELFERLLA ENSTTRP00000004968/1-377 PSCERRPDVN PVDEAIPRIA INDPELPGPK --PAPSIPSS NMELFERLLA bmy_08173T0/1-340 PPCKRGPDTN SVDEAIPRIA INDPELPGPK --PAPSIPSS NMELFERLLA BACU004687/1-380 PPCERRPDTN PVDRAIPRIA INDPELPGPK --PAPSIPSS NMELFERLLA 301 350 ENSP00000334650/1-384 LEKQNTLQLP PQAMERSNSC PELVLGRLSY SIISNLDEVG QQVERLDIPL ENSBTAP00000020046/1-383 REKDNTLQVP PQAMERSTSC PELGSGRLSS SIISNLDEVG RQVERLDVPL ENSTTRP00000004968/1-377 REKGNTRQVP PQAMEGSSSR PELVFGRLSY SIINNLDEAG RQEERLGIPL bmy_08173T0/1-340 QEKGNTLQVP PQAMERSSSC PELVSGRLSY SIINNLDXAG LQVERLDIPL BACU004687/1-380 QEKGNTLQVP PQAMERSSSC PELVSGRLSY SIINNLDEAG RQVERLDIAF 351 400 ENSP00000334650/1-384 PIIALIVFAY ISCAAAILPF WETQLDFENA FYFCFVTLTT IGFGDTVLEH ENSBTAP00000020046/1-383 PVIALVVFAY ISCAAAVLPI WEKQLNFENA FYFCFITLTT IGFGDIGLEH ENSTTRP00000004968/1-377 PIIALVVVAY VSCAAAILP- IEKQLNFENA FCFCFVTLTT VGFGDIAFEQ bmy_08173T0/1-340 PIIAL----- ---------- WSS------- ---------- ---------- BACU004687/1-380 PIIALVVFAY LSCAAAILPI WEKQVNFENA FYFCFVTLTT IGFEDIVLEH 401 450 ENSP00000334650/1-384 PNFFLFFSIY IIVGMEIVFI AFKLVQNRLI DIYKNVMLFF AKGKFYHLVK ENSBTAP00000020046/1-383 PHFFLFFSIY IIIGMEIVCI AFKLVQNRLI HLYKTLILFF ANGRFSSPV- ENSTTRP00000004968/1-377 PHF-LFFSIY IIVGMEIVCM AFKLVQNRLI HIYRNVVLFF ANGKCYNPVK bmy_08173T0/1-340 PTF------- ---------- PVQLPSSPS- ---------- --GRSS---- BACU004687/1-380 PHFFFFFSIY IIVGMEIVCM AFKLVQNRLI HIYKNVMLFF ANGKCYNPFK 451 500 ENSP00000334650/1-384 K ENSBTAP00000020046/1-383 - ENSTTRP00000004968/1-377 K bmy_08173T0/1-340 - BACU004687/1-380 K