KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:10:12 2014 Check: 00 .. Name: BACU006508/1-306 Len: 346 Check: 5085 Weight: 1.00 Name: bmy_06681T0/1-289 Len: 346 Check: 9505 Weight: 1.00 Name: ENSP00000221566/1-313 Len: 346 Check: 4813 Weight: 1.00 Name: ENSTTRP00000007708/1-313 Len: 346 Check: 6054 Weight: 1.00 Name: ENSBTAP00000020081/1-313 Len: 346 Check: 6134 Weight: 1.00 // 1 50 BACU006508/1-306 MDNKKRLAYS IIRFLHDQLQ HGELSSDAQE SLEVR----- ---GPELPPP bmy_06681T0/1-289 MDNKKRLAYA IIRFLHDQLR HGELSSDAQE SLEVAIQCLE TAFGVTVEDS ENSP00000221566/1-313 MDNKKRLAYA IIQFLHDQLR HGGLSSDAQE SLEVAIQCLE TAFGVTVEDS ENSTTRP00000007708/1-313 MDNKKRLAYA IIRFLHDQLR HGELSSDAQE SLEVAIQCLE TAFGVTVEDS ENSBTAP00000020081/1-313 MDNKKRLAYA IIRFLHDQLR HGELSSDAQE SLEVAIQCLE TAFGVTVEDS 51 100 BACU006508/1-306 GLSCPRASPG WVGSGGGFWV WGRRSAVSRC PSKSSSWLWG QEIPPDLRSP bmy_06681T0/1-289 DLALPQTLPE IFGAAAA--- ---------- ---------G REIPPDLRSP ENSP00000221566/1-313 DLALPQTLPE IFEAAAT--- ---------- ---------G KEMPQDLRSP ENSTTRP00000007708/1-313 DLALPQTLPE IFEAAAA--- ---------- ---------G REIPPDLRSP ENSBTAP00000020081/1-313 DLALPQTLPE IFEAAAA--- ---------- ---------G KELPPDLRSP 101 150 BACU006508/1-306 QRTPPSEEDS AEAERLKTEG NEQMKVENFE AAVHFYGKAI ELNPANAVYF bmy_06681T0/1-289 QRTPPSEEDS AEAERLKTEG NEQMKVENFE AAVHFYGKAI ELNPANAVYF ENSP00000221566/1-313 ARTPPSEEDS AEAERLKTEG NEQMKVENFE AAVHFYGKAI ELNPANAVYF ENSTTRP00000007708/1-313 QRTPPSEEDS AEAERLKTEG NEQMKVENFE AAVHFYGKAI ELNPANAVYF ENSBTAP00000020081/1-313 QETPPSEEDS AEAERLKTEG NEQMKVENFE AAVHFYGKAI ELNPANAVYF 151 200 BACU006508/1-306 CNRAAAHSKL GNYAGAVQDC ERAICIDPSY SKAYGRMGLA LSSLNKHTEA bmy_06681T0/1-289 CN-------- ---------- ---------- -------SLA LSSLNKHTEA ENSP00000221566/1-313 CNRAAAYSKL GNYAGAVQDC ERAICIDPAY SKAYGRMGLA LSSLNKHVEA ENSTTRP00000007708/1-313 CNRAAAHSKL GNYAGAVQDC ERAICIDPSY SKAYGRMGLA LSSLNKHTEA ENSBTAP00000020081/1-313 CNRAAAYSKL GNYAGAVQDC ERAICIDPSY SKAYGRMGLA LSSLNKHTEA 201 250 BACU006508/1-306 VAYYRKALEL DPDNETYKSN LKVAELRLRE APSP------ ---------- bmy_06681T0/1-289 VAYYRKALEL DPDNETYKSN LKVAELRLRE APSPTGGVGS FDIAGLLNNP ENSP00000221566/1-313 VAYYKKALEL DPDNETYKSN LKIAELKLRE APSPTGGVGS FDIAGLLNNP ENSTTRP00000007708/1-313 VAYYRKALEL DPDNETYKSN LKVAELRLRE APSPTGGVGS FDIAGLLNNP ENSBTAP00000020081/1-313 VAYYRKALEL DPDNETYKSN LKVAELRLRE APSPTGGVGS FDIAGLLNNP 251 300 BACU006508/1-306 -----ASNLM NNPQVQQL-- ---------M SGMISGGHNP LGTPGTNPSQ bmy_06681T0/1-289 SFMSMRGRAR RGSEGGGLSR LRVKGSLCSM SGMISGGHNP LGTPGTNPSQ ENSP00000221566/1-313 GFMSMASNLM NNPQIQQL-- ---------M SGMISGGNNP LGTPGTSPSQ ENSTTRP00000007708/1-313 SFMSMASNLM NNPQVQQL-- ---------M SGMISGGHNP LGTPGTNPSQ ENSBTAP00000020081/1-313 SFMSMASNLM NNPQVQQL-- ---------M SGMISGGHNP LGTPGTSPSQ 301 350 BACU006508/1-306 NDLASLIQAG QQFAQQMQQQ NPELIEQLRS QIRSRTPSAS SDDPRE bmy_06681T0/1-289 NDLASLIQAG QQFAQQMQQQ NPELIEQLRS QIRSRTPSAS GDGPQE ENSP00000221566/1-313 NDLASLIQAG QQFAQQMQQQ NPELIEQLRS QIRSRTPSAS NDDQQE ENSTTRP00000007708/1-313 NDLASLIQAG QQFAQQMQQQ NPELIEQLRS QIRSRTPSAS SDDPRE ENSBTAP00000020081/1-313 NDLASLIQAG QQFAQQMQQQ NPELIEQLRS QIRSRTPSAS NDDQQE