KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 4 Type: P Thu May 15 17:10:15 2014 Check: 00 ..
Name: bmy_14985T0/1-245 Len: 288 Check: 3193 Weight: 1.00
Name: ENSP00000362704/1-200 Len: 288 Check: 7750 Weight: 1.00
Name: ENSBTAP00000020099/1-200 Len: 288 Check: 9672 Weight: 1.00
Name: ENSTTRP00000009218/1-241 Len: 288 Check: 1000 Weight: 1.00
//
1 50
bmy_14985T0/1-245 MQITSCELSF HPFRSRIEGC CGGRREPPTE ASLQTPNLQG LRPSQHPMED
ENSP00000362704/1-200 ---------- ---------- ---------- ---------- -------MDD
ENSBTAP00000020099/1-200 ---------- ---------- ---------- ---------- -------MED
ENSTTRP00000009218/1-241 ---------- ---------- ---------- ---------- -------MED
51 100
bmy_14985T0/1-245 KKKKRSPKPC LTQPAQPPGT LRRVPVPTSH SGSLALGLPH LPSPKQRAKF
ENSP00000362704/1-200 KKKKRSPKPC LAQPAQAPGT LRRVPVPTSH SGSLALGLPH LPSPKQRAKF
ENSBTAP00000020099/1-200 KKKKRSPKPC LTQPAQPPGT LRRVPVPTSH SGSLALGLPH LPSPKQRTKF
ENSTTRP00000009218/1-241 KKKKRSPKPC LTQPAQPPGT LRRVPVPTSH SGSLALGLPH LPSPKQRAKF
101 150
bmy_14985T0/1-245 KRVGKEKCRP VLAGGGGGSA GTPLQHSFLT EVTDVYEMEG GLLNLLNDFH
ENSP00000362704/1-200 KRVGKEKCRP VLAGGGSGSA GTPLQHSFLT EVTDVYEMEG GLLNLLNDFH
ENSBTAP00000020099/1-200 KRVGKEKCRP VLAGGAGGSA GTPLQHSFLT EVTDVYEMEG GLLNLLNDFH
ENSTTRP00000009218/1-241 KRVSKEKCRP VLAGGGGGSA GTPLQHSFLT EVTDVYEMEG GLLNLLNDFH
151 200
bmy_14985T0/1-245 SGRLQAFGKE CSFEQLEHVR EMQEKLARLH FSLDVCGEEE EEEEEEEDGV
ENSP00000362704/1-200 SGRLQAFGKE CSFEQLEHVR EMQEKLARLH FSLDVCGE-E EDDEEEEDGV
ENSBTAP00000020099/1-200 SGRLQAFGKE CSFEQLEHVR EMQEKLARLH FSLDVCGE-E EDEEEEDDGV
ENSTTRP00000009218/1-241 SGRLQAFGKE CSFEQLEHVR EMQEKLARLH FSLDVCGEEE EEEEEEEDGV
201 250
bmy_14985T0/1-245 TEGLPEEQKK TMADRNLDQL LSNVG----- ---------- ----------
ENSP00000362704/1-200 TEGLPEEQKK TMADRNLDQL LSNLEDLSNS I--------- ----------
ENSBTAP00000020099/1-200 TDGLPEEQKK TMADRNLDQL LSNLEDLSNS I--------- ----------
ENSTTRP00000009218/1-241 TEGLPEEQKK TMADRNLDQL LSNLEDLSNS MYPFKGTQCV SVPEIKSASA
251 300
bmy_14985T0/1-245 -----QGWVL QFLGAPEGVW RGTCF----- --------
ENSP00000362704/1-200 -----QKLHL AENAEPEEQS AA-------- --------
ENSBTAP00000020099/1-200 -----QKLHL AENAEPEEPS AV-------- --------
ENSTTRP00000009218/1-241 SPTLQESLQI TNILTPFSPR ISHKFPLPRR VQKEFPKY