KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:10:21 2014 Check: 00 .. Name: ENSP00000252597/1-703 Len: 908 Check: 5057 Weight: 1.00 Name: ENSBTAP00000020104/1-698 Len: 908 Check: 3997 Weight: 1.00 Name: ENSTTRP00000002936/1-704 Len: 908 Check: 6957 Weight: 1.00 Name: bmy_02585T0/1-395 Len: 908 Check: 1264 Weight: 1.00 Name: BACU016695/1-906 Len: 908 Check: 9985 Weight: 1.00 // 1 50 ENSP00000252597/1-703 MSARATRPRS RRGRH-APPG ELDPVAESSE EVEAASGSSK PSFAPPPVSS ENSBTAP00000020104/1-698 MSARATRPRS RRGRH-ALPG ELDPVAESSE EAEAASGSSE PGPVASQDST ENSTTRP00000002936/1-704 MSARATRPRS RRGRHAALPG ELDPVAESSE EAEAASGSSE PGPVPSQDSC bmy_02585T0/1-395 MSARATRPRS RRGRH-ALPG ELDPVAESSE EAEAASGSSE PGPVPSQDSC BACU016695/1-906 MSARATRPRS RRGRH-ALPG ELDPVAESSE EAEAASGSSE PGPVPSQDSC 51 100 ENSP00000252597/1-703 GLEQLGPMEE VSGQGLGSRT DKKMDGGSGR ELASAPEVPH KPAVEAHQAP ENSBTAP00000020104/1-698 KLELLGPEVE VKGQGLESRT DKEVDGDSSR GPAPAPEG-- RPREETHQAP ENSTTRP00000002936/1-704 KPEPLGPEAE AKGQGLESRT DKEVDGDSSR GPAPAPEGPY EPAQEAHQAP bmy_02585T0/1-395 KPEPLGPETE AKGQGLESRT DKEVDGDSSR GPAPAPEGPY EPAQEAHQAP BACU016695/1-906 KPEPLGPETE AKGQGLESRT DKGVDGDSSR GPAPAPEGPY EPAQEAHQAP 101 150 ENSP00000252597/1-703 EAALQYKETV PPGNGAPDVF QTLQHTLSSL EAAAAAWRHQ PPSHSGPMEF ENSBTAP00000020104/1-698 EAAPQDGEGV PSG---PDIF QTLQQALSSL EAAAAAWRHR PPNCPGPVEA ENSTTRP00000002936/1-704 EAAPRDRENV PSGPRAPDVF QTLQQALSSL EAAVAAWRHQ PPRCPGPLEA bmy_02585T0/1-395 EAASWDRENV PSGPRAPDVF QTLQQALSSL EAAAAAWRHQ PPRCPGPLEA BACU016695/1-906 EAASWDRENV PSGPRAPDVF QTLQQALSSL EAAAAAWRHQ PPRCPGPLEA 151 200 ENSP00000252597/1-703 EGTSEGGAGS LGKQEGAGSC QREAARLAER NAWLRLALSS REDELVRTQA ENSBTAP00000020104/1-698 KDGSEGAPKP CLEQGGAGSC QREAARLAER NAWLRLALGS REDELIRTQK ENSTTRP00000002936/1-704 KDRSEGGPKP CLEQEQAGSC QRDAARLTER NAWLRLALSS REDELIRTQN bmy_02585T0/1-395 KDRSEGGPKP CLEQEQAGSC QRDAARLTER NAWLRLALGS REDELIRTQN BACU016695/1-906 KDRSEGGPKP CLEQEQAGSC QRDAARLTER NAWLRLALGS REDELIRTQN 201 250 ENSP00000252597/1-703 SLEAIRAEKE TLQKEVQELQ DSLLRLEPCP HLSHNQAGGS GSGSSSSEAD ENSBTAP00000020104/1-698 FLQAFQAEKE MLQREVQELQ DSLLRLEPFS PPSCDQAGGS GSGSSSSGAD ENSTTRP00000002936/1-704 SLKAFQAEKE MLQREVQELQ DSLLRLRPFP PPSCDQAGGS GSGSSSSGVD bmy_02585T0/1-395 SLKAFQAEKE MLQREVQELQ DSLLRLKPFP PPSCDQAGGS GSGSSSSGAD BACU016695/1-906 SLKAFQAEKE MLQREVQELQ DSLLRLKPFP PPSCDQVGGS GSGSSSSGAD 251 300 ENSP00000252597/1-703 REPWETQDSF SLAHPLLRRL RSHSSTQILG SLPNQPLSPE MHIMEAQMEQ ENSBTAP00000020104/1-698 GETWGSQDPF SRAHPLLRRL QSDSSTQMLG SLPTQPLAPE MHIMEAQMEK ENSTTRP00000002936/1-704 GETWGTQDPF SLAHPLLRRL QSDSSTQMLG SLPTQLLAPE MHIMEAQMEH bmy_02585T0/1-395 GETWGTQDPF SLAHPLLRRL QSDSSTQMLG PLPTQLLAPE MHIMEAQMEH BACU016695/1-906 GETWGTQDPF SLAHPLLRRL QSDSSTQMLG PLLTQLLAPE MHIMEAQMEH 301 350 ENSP00000252597/1-703 LRGSIEKLKC FNRLLSAVLQ GYKGRCEGLS MQLGQREAEA TALHLALQY- ENSBTAP00000020104/1-698 LRGNIEKLKC FNRLLSAVLQ EYKGRCEGLS MQLGQQEAEA TALRLALQY- ENSTTRP00000002936/1-704 LQGNIEKLKC FNRLLSAVLQ EYKGRCEGLS MRLGQREAEA TALRLALQY- bmy_02585T0/1-395 LQGNIEKLKC FNRLLSAVLQ EYKGRCEGLS MRLGQREAEA TALRLALQY- BACU016695/1-906 LQGNIEKLKC FNRLLSAVLQ EYKGRCEGLS MRLGQREAEA TALRLALQYS 351 400 ENSP00000252597/1-703 ---------- ---SEHCEEA YRVLLALREA DSGAGDEAPM SDLQAAEKEA ENSBTAP00000020104/1-698 ---------- ---SEHCEEA YSALLTLREA DSGAGKEAFV DDLEAAEKEA ENSTTRP00000002936/1-704 ---------- ---SEHCEEA YGALLTLRKA DSGAGEEAFM DDLEAAEKEA bmy_02585T0/1-395 ---------- ---------- ---------- ---------- ---------- BACU016695/1-906 KMGVLERSEL VSHSEHCEEA YGALLTLRKA DSGAGEEAFM DNLEAAEKEA 401 450 ENSP00000252597/1-703 WRLLAQEEAA MDAGAQQNPQ PSPEGSSVDK PTPQEVAFQL RSYVQRLQER ENSBTAP00000020104/1-698 QRLLVQEKAA MDGVTLQDPY PSPEGSSVDK PTSQEVASQL QGYVQRLQER ENSTTRP00000002936/1-704 QRLLVQEEAA MDGGILQDPR PSPEGSSVDR PTPQEVAIQL QGYVQRLQER bmy_02585T0/1-395 ---------- ---------- ---------- ---------- ---------- BACU016695/1-906 QRLLVQEEAA MDGGILQDPR PSPEGSSVDR PTPQEVAIQL QGYVQRLQER 451 500 ENSP00000252597/1-703 RSLMKILSEP GPTLAPMPTV PRAEAMVQAI LGTQAGPALP RLEKTQIQQD ENSBTAP00000020104/1-698 RALVKIPSEP GSTWVPISTV PHAEAMVQAI LGTQPGPALP RLEKMQIQQD ENSTTRP00000002936/1-704 RALVKIPPEP GPTLAPMSAV PRAEAMVQAI LGTQPGPALP RLEKMQIQED bmy_02585T0/1-395 ---------- ---------- ---------- ---------- ---------- BACU016695/1-906 RALVKIPPEP GPTLAPMSTV PRAEAMVQAI LGTQPGPALP RLEKMQIQED 501 550 ENSP00000252597/1-703 LVAAREALAD LMLRLQLVRR EKRGLELREA ALRALGPAHV LLLEQLRWER ENSBTAP00000020104/1-698 LAATRETLED LMLQLQLVRR EKRALELREA ALRAQGPAHV LLLEQLRWER ENSTTRP00000002936/1-704 LVATRETLAD LMLRLQLVRR EKRALELREA ALRAQGPAHV LLLEQLRWER bmy_02585T0/1-395 ---------- ---------- ---------- --RSVHPAH- ---------- BACU016695/1-906 LVATRETLAD LMLRLQLVRR EKRALELREA ALRAQGPAHV LLLEQLRWER 551 600 ENSP00000252597/1-703 AELQAGGANS SGGHSSGGGS SGDEEEWY-Q GLPAVPGGTS GIDGGQVGRA ENSBTAP00000020104/1-698 AQLRTGEANS SGGDSSGGGS TGDEEEWP-Q GPPAVPGGSR GIDGGQVSKM ENSTTRP00000002936/1-704 AKLWTGGANS SGGDSSGGGS SGDEEEWS-Q XXXXXXXXSR TVDGGQVSKV bmy_02585T0/1-395 ---------- ---------- --DITDWAGN GCP------- ---------- BACU016695/1-906 AKLRTGGANS SGGDSSGGGS SGDEEEWS-Q GPPAVPGGSR GVDGGQVSKV 601 650 ENSP00000252597/1-703 WDPEKLAQEL AASLTRTLDL QEQLQSLRRE LEQVAQKGRA RRSQSAELNR ENSBTAP00000020104/1-698 QDPEELTQEL SASLTRALGL REQLQSLREE LEEVARKGRA RRAQSAELNS ENSTTRP00000002936/1-704 QNPEELAQEL SASLTRALGL REQLQSLREE LEEVAQKGRA RRAQSTELNS bmy_02585T0/1-395 ---------- ---------- ---------- -QRIAPIPRE R--------- BACU016695/1-906 QNPEELAQEL SASLTRALGL REQLQSLREE LEEVAQKGRA RRAQSTELNS 651 700 ENSP00000252597/1-703 DLCKAHSAL- ---------- ---------- ------VLAF RGA------- ENSBTAP00000020104/1-698 DLCKAHSTL- ---------- ---------- ------VMAF RGA------- ENSTTRP00000002936/1-704 DLCKAHSAL- ---------- ---------- ------VMAF RGA------- bmy_02585T0/1-395 ---------- ---------- ---------- ---------- ---------- BACU016695/1-906 DLCKAHSDAE PGDEERPGLQ VDCVVCGDKS SGKHYGVFTC EGCKSFFKRS 701 750 ENSP00000252597/1-703 ---------- ---------H RKQEEQRRKL ---------- ---------- ENSBTAP00000020104/1-698 ---------- ---------H RKQEEQRRKL ---------- ---------- ENSTTRP00000002936/1-704 ---------- ---------H RKQEEQRRKL ---------- ---------- bmy_02585T0/1-395 ---------- ---------- ---QSPRRKV ---------- ---------- BACU016695/1-906 IRRNLSYTCR SNRDCQIDQH HRNQCQYCRL KKCFRVALLR LSWSELFVLN 751 800 ENSP00000252597/1-703 ---------- ---------- ------EQQM ALME-----A QQAEEVAVLE ENSBTAP00000020104/1-698 ---------- ---------- ------EQQM TLME-----A RQAEELAVLE ENSTTRP00000002936/1-704 ---------- ---------- ------EQQL ALME-----A RQAEELAVLE bmy_02585T0/1-395 ---------- ---------- ------LSLT TEIN-----L RQF------- BACU016695/1-906 AAQAALPLHT APLLAAAGLH AAPMAAERAV AFMDQVRAFQ EQVDKLGRLQ 801 850 ENSP00000252597/1-703 ATARALG--- ---------- ---------- ---------- ---KPRPPLP ENSBTAP00000020104/1-698 ATARALE--- ---------- ---------- ---------- ---RSRLPCP ENSTTRP00000002936/1-704 ATARALG--- ---------- ---------- ---------- ---RPRPPCL bmy_02585T0/1-395 ---------- ---------- ---------- ---------- ---------- BACU016695/1-906 VDSAEYGCLK AIALFTPDAC GLSDPAHVES LQEKAQVALT EYVRAQYPSQ 851 900 ENSP00000252597/1-703 PPQLGDTFL- ---------- ---------- ---------- ---------- ENSBTAP00000020104/1-698 PSRPGETFL- ---------- ---------- ---------- ---------- ENSTTRP00000002936/1-704 PPRSGGTFL- ---------- ---------- ---------- ---------- bmy_02585T0/1-395 ---------- ---------- ---------- ---------- ---------- BACU016695/1-906 PQRFGRLLLR LPALRAVPAS LISQLFFMRL VGKTPIETLI RDMLLSGSTF 901 950 ENSP00000252597/1-703 -------- ENSBTAP00000020104/1-698 -------- ENSTTRP00000002936/1-704 -------- bmy_02585T0/1-395 -------- BACU016695/1-906 NWPYGSGQ