KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 4 Type: P Thu May 15 17:10:21 2014 Check: 00 ..
Name: ENSP00000361721/1-184 Len: 186 Check: 264 Weight: 1.00
Name: ENSBTAP00000020109/1-185 Len: 186 Check: 3691 Weight: 1.00
Name: bmy_19251T0/1-181 Len: 186 Check: 8603 Weight: 1.00
Name: BACU000387/1-53 Len: 186 Check: 984 Weight: 1.00
//
1 50
ENSP00000361721/1-184 MADHLMLAEG YRLVQRPPSA AAAHGPHALR TLPPYAGPGL DSGLRPRGAP
ENSBTAP00000020109/1-185 MADHLMLAEG YSLVPRPPPA APAHGPHALR TLQPYSSPGL DSGLRPRGAP
bmy_19251T0/1-181 MADHLMLAEG YSRVPRPPPA APAHGPHALR TLQPYSGPGL DSGLRPR---
BACU000387/1-53 ---------- ---------- ---------- ---------- ----------
51 100
ENSP00000361721/1-184 LGPPPPRQPG ALAYGAFGPP SSFQPFPAVP PPAAGIAHLQ PVATPYPGRA
ENSBTAP00000020109/1-185 LGPPPP-PQG TVAYGAFGPS PTFQPFPAVP PPAAGNAHLQ PVATLYPGRA
bmy_19251T0/1-181 -GPPPP-PPG ALAYGAFGPP PAFQPFPAVP PPAAGSAHLQ PVATLYPGRA
BACU000387/1-53 ---------- ---------- ---------- ---------- ----------
101 150
ENSP00000361721/1-184 AAPPNAPGGP PGPQPAPSAA APP--PPAHA LGGMDAELID EEALTSLELE
ENSBTAP00000020109/1-185 TMPPGAPGGP SGPQPAPGAP APPLQPPAHA LGGMDAELID EEALTSLELE
bmy_19251T0/1-181 TAPPGAPGGP PGPQPVPGAP APPLPPPAHA LGGMDAELID EEALTSLELE
BACU000387/1-53 ---------- ---------- ---------- ---MDAELID EEALTSLELE
151 200
ENSP00000361721/1-184 LGLHRVRELP ELFLGQSEFD CFSDLGSAPP AGSVSC
ENSBTAP00000020109/1-185 LGLHRVRDLP ELFLGQSEFD CFSDLGSAPP AGSVSC
bmy_19251T0/1-181 LGLHRVRDLP ELFLGQSEFD CFSDLGSAQP AGSVSC
BACU000387/1-53 LGLHRVRDLP ELFLGQSEFD CFSDLGSAQP AGSVSC