KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:10:23 2014 Check: 00 .. Name: ENSP00000378072/1-532 Len: 578 Check: 3205 Weight: 1.00 Name: BACU018042/1-471 Len: 578 Check: 3266 Weight: 1.00 Name: bmy_05851T0/1-513 Len: 578 Check: 8234 Weight: 1.00 Name: ENSBTAP00000020115/1-519 Len: 578 Check: 9365 Weight: 1.00 Name: ENSTTRP00000010176/1-476 Len: 578 Check: 6948 Weight: 1.00 // 1 50 ENSP00000378072/1-532 MEEQVFKGDP DTPHSISFSG SGFLSFYQAG A--VDALRDL APRMLETAHR BACU018042/1-471 MEEQVFKGDP DTPHSISFSG SGFLSFYQAG A--VDAFRDL APRMLETAHR bmy_05851T0/1-513 MALGTFASEV RVVLLLAKAN NAFRTEKENG LGELHGFPGN ATPLANASTE ENSBTAP00000020115/1-519 MEEQVFKGDP DTPHSISFSG SGFLSFYQAG V--VDALRDL APRMLETAHR ENSTTRP00000010176/1-476 MEEQVFKGDP DTPHSISFSG SGFLSFYQAG V--VDAFRDL APRLLETAHR 51 100 ENSP00000378072/1-532 FAGTSAGAVI AALAICGI-- ----EMDEYL RVLNVGVAEV KKSFLGPLSP BACU018042/1-471 FAGTSAGAVI AALAICGI-- ----EMDEYL RVLNVGVAEV KKSFLGPLSP bmy_05851T0/1-513 AAEPPDSPVP TAPAGGGAGP QREGPHDEYL RVLNVGVAEV KKSFLGPLSP ENSBTAP00000020115/1-519 FAGTSAGAVV AALVICGI-- ----EMDEYL RVLNVGVAEV KKSFLGPLSP ENSTTRP00000010176/1-476 FAGTSAGAVI AALAVCGI-- ----EMDEYL RVLSVGVAEV KKSFLGPLSP 101 150 ENSP00000378072/1-532 SCKMVQMMRQ FLYRVLPEDS YKVTTGKLHV SLTRLTDGEN VVVSEFTSKE BACU018042/1-471 SCKLVQMMRQ FLYRVLPEDS YKVATGKLHV SLTRFTDGES VVVSEYTSKE bmy_05851T0/1-513 SCKLVQMMRQ FLYRVLPEDS YKVATGKLHV SLTRFTDGES VV-------- ENSBTAP00000020115/1-519 SCKMVQMMRQ FLYRVLPEDS YKVTTGKLHV ALTRFTDGES VVVSEYTSKE ENSTTRP00000010176/1-476 SCKVVQMMRQ FLYRVLPEDS YKVATGKLHV SLTRFTDGES VVVSEYTS-E 151 200 ENSP00000378072/1-532 ELIE------ ---ALYCSCF VPVYCGLIPP TYRGVRYIDG GFTGMQPCAF BACU018042/1-471 ELIEARGRDL GIRALYCSCF VPVYCGLIPP TYRGVRYIDG GFSGMQPCSF bmy_05851T0/1-513 ---------- ---ALYCSCF VPVYCGLIPP TYRGVRYIDG GFSGMQPCSF ENSBTAP00000020115/1-519 ELIE------ ---ALYCSCF VPVYCGLIPP TYRGVRYIDG GFTGMQPCSF ENSTTRP00000010176/1-476 ELIEA----- ---ALYCSCF VPVYCGLIPP TYRGVRYIDG AFSGMQPCSF 201 250 ENSP00000378072/1-532 WTDAITISTF SGQQDICPRD CPAIFHDFRM FNCSFQFSLE NIARMTHALF BACU018042/1-471 WTDSITISTF SGQQDICPRD CPAIFCDFRM FNCSFQFSLE NIARMTHALF bmy_05851T0/1-513 WTDSITISTF SGQQDICPRD CPAIFCDFRM FNCSFQFSLE NIARMTHALF ENSBTAP00000020115/1-519 WTDSITISTF TGQQDICPRD CPAIFHDFRM FNCSFQFSLE NIARMTHALF ENSTTRP00000010176/1-476 WTDSITISTF SGQQDICPRD CPANICDFRI FNCSFQFSLE NITRMIHALF 251 300 ENSP00000378072/1-532 PPDLV----- ---------- -ILHDYYYRG YEDAVLYLRR L-------NA BACU018042/1-471 PPDLVARDRR DLGGGQGEPE RILHNYYYRG YEDAVSYLRR LTAVDIFTDA bmy_05851T0/1-513 PPDLV----- ---------- -ILHNYYYRG YEDAVSYLRR L-------NA ENSBTAP00000020115/1-519 PPDLM----- ---------- -ILHNYYYRG YEDAVLYLRR L-------NA ENSTTRP00000010176/1-476 PPDLV----- ---------- -ILHDYYYRG YEDAVSYLRR L-------NA 301 350 ENSP00000378072/1-532 VYLNSSSKRV IFPRVEVYCQ IELALGNECP ERSQPSLRAR QASLEGATQP BACU018042/1-471 AYLNSPSKRV IFPWVEVYCQ LERALGNECP ENCQPSLQTE RASPEESRQL bmy_05851T0/1-513 AYLNSPSKRV IFPWVEVYCQ IERALGNECP ENCQPSLQTE WASPEESRQL ENSBTAP00000020115/1-519 AYLNSPSKRV IFPRVEVYCQ IELALGNQCP ERCQPSLQRQ PASPEESRQL ENSTTRP00000010176/1-476 AYLNSPSKRV IFPWVEVYCQ IERALGNECP ERCQPSLQTE RASPEESRQL 351 400 ENSP00000378072/1-532 HKEWVPKGDG RGSHGPPVSQ PVQTLEFTC- --ES-PVSAP VSPLEQPPAQ BACU018042/1-471 HTQWAPKRER KGGRGPPLSP PVQTSESTSG TTDWITIQIP T--------- bmy_05851T0/1-513 HTQWAPKGER KGGRGPPLSP PVQTPESTC- --EW-PVESP VS----PPAS ENSBTAP00000020115/1-519 HTQRAPKEDG RGGRCPPLSP PMPAPESTC- --DW-PVEPP VL----SPAS ENSTTRP00000010176/1-476 HTQWAPKGER KGGRDPPLSP PVQTPESTC- --EW-PVASP VL----PPAS 401 450 ENSP00000378072/1-532 PLASSTPLSL SGMPPVSFPA VHKPPSSTPG SSLPTPPPGL SPLSPQQQVQ BACU018042/1-471 ---------- --------PP VIYVIQDV-- -------PG- ---------- bmy_05851T0/1-513 PLASSPSHPP TDLPPVSLPA VHFLPSST-- -------PGL SPVSPSQQVQ ENSBTAP00000020115/1-519 PPASSPSRSP TDLPPASLPA VSSLPSST-- -------PGL SPVPPSQQIQ ENSTTRP00000010176/1-476 PLASSPSHSP TDLPPVALPA VHFLPSST-- -------PGL SPVSPSQQVQ 451 500 ENSP00000378072/1-532 PSGSPARSLH SQAPTSPRPS LGPSTVGAPQ TLPRSSLSAF PAQPPVEELG BACU018042/1-471 ---------- -AFRCGDIAN IAPMFLFSST CTATCGGTGP RTAPR----- bmy_05851T0/1-513 LTGSPPRSPP PQSSMSSRTS LGPSTVGTSP TLPQCSSSAS PAQPPVEELG ENSBTAP00000020115/1-519 PTGSPPKSPP PQATASPRPP LGPCSVGAPP ALPRYSSSAS PAQPPVEELG ENSTTRP00000010176/1-476 LTGSPPRSPP PQSSMSSRTS LGPSAVGTSP TLPQCSSSAS PAQPPVEELG 501 550 ENSP00000378072/1-532 QEQPQAVALL VSSKPKSAVP LVHVKETVSK PYVTESPAED SNWVNKVFKK BACU018042/1-471 ---------- ---------- ---------- ----ERTAED SNWVSKVFKK bmy_05851T0/1-513 PEQPQ--APF ASSNSKSTVP LANVKETMSK PYAMERTAED SSWVSKVFKK ENSBTAP00000020115/1-519 PEQPQ--VPF ASSNSKSTVP LANVKETASK PHAVERPAEE SNWVSKVFKK ENSTTRP00000010176/1-476 PEQPQAAAPC ASSNSKHTVP LANVKETMSK PYA------- ---------- 551 600 ENSP00000378072/1-532 NKQKTSGTRK GFPRHSGSKK PSSKVQ-- BACU018042/1-471 NKQKTSDTRK VFPRHPQSKT PGSKMQ-- bmy_05851T0/1-513 NKQKTSDTRK GFPRHPQSKT PGSKMQ-- ENSBTAP00000020115/1-519 NKQKTSGTRK GCLRHPRSKK TGSKVQKL ENSTTRP00000010176/1-476 ---------- ---------- --------