KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:10:24 2014 Check: 00 .. Name: ENSTTRP00000010998/1-1291 Len: 1601 Check: 3441 Weight: 1.00 Name: ENSP00000292055/1-1263 Len: 1601 Check: 9797 Weight: 1.00 Name: ENSBTAP00000020116/1-1304 Len: 1601 Check: 7811 Weight: 1.00 Name: bmy_18238T0/1-1294 Len: 1601 Check: 666 Weight: 1.00 Name: BACU017298/1-1187 Len: 1601 Check: 8858 Weight: 1.00 // 1 50 ENSTTRP00000010998/1-1291 MAAAAAASGA GGAAGAGAGG AGPAGRLLPP PASGPPAAPA AVPPAAGPPR ENSP00000292055/1-1263 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000020116/1-1304 ---------- ---------- ---------- ---------- ---------- bmy_18238T0/1-1294 ---------- ---------- ---------- ---------- ---------- BACU017298/1-1187 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000010998/1-1291 PSAPASRGPV PARIGCYEID RTIGKGNFAV VKRATHLVTQ GQVAIKIIDK ENSP00000292055/1-1263 ---------M PARIGYYEID RTIGKGNFAV VKRATHLVTK AKVAIKIIDK ENSBTAP00000020116/1-1304 ---------F MLKLYIYSIE RSPKDFFRII IKKALHIILC TKVAIKIIDK bmy_18238T0/1-1294 ---------- ---------- ---------- ---------- ---------- BACU017298/1-1187 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000010998/1-1291 TQLDEENLKK IFREVQIMKM LCHPHIIRLY QVMETERMIY LVTEYASGGE ENSP00000292055/1-1263 TQLDEENLKK IFREVQIMKM LCHPHIIRLY QVMETERMIY LVTEYASGGE ENSBTAP00000020116/1-1304 TQLDEENLKK IFREVQIMKM LCHPHIIRLY QVMETERMIY LVTEYASGGE bmy_18238T0/1-1294 ---------- ---------- ---------- ---------- ---------- BACU017298/1-1187 ---------- -------MKM LCHPHIIRLY QVMETERMIY LVTEYASGGE 151 200 ENSTTRP00000010998/1-1291 IFDHLVAHGR MAEKEARRKF KQIVAAVYFC HCRNIVHRDL KAENLLLDAN ENSP00000292055/1-1263 IFDHLVAHGR MAEKEARRKF KQIVTAVYFC HCRNIVHRDL KAENLLLDAN ENSBTAP00000020116/1-1304 IFDHLVAHGR MAEKEARRKF KQIVAAVYFC HCRNIVHRDL KAENLLLDAN bmy_18238T0/1-1294 ---------- ---------- ---------- ---------- ---------- BACU017298/1-1187 IFDHLVAHGR MAEKEARRKF KQIVAAVYFC HCRNIVHRDL KAENLLLDAN 201 250 ENSTTRP00000010998/1-1291 LNIKIADFGF SNLFTPGQLL KTWCGSPP-- ---------- --------SL ENSP00000292055/1-1263 LNIKIADFGF SNLFTPGQLL KTWCGSPPYA APELFEGKEY DGPKVDIWSL ENSBTAP00000020116/1-1304 LNIKIADFGF SNLFTPGQLL KTWCGSPPYA APELFEGKEY DGPKVDIWSL bmy_18238T0/1-1294 ---------- ---------- ---------- ---------- ---------- BACU017298/1-1187 LNIKIADFGF SNLFTPGQLL KTWCGSPPYA APELFEGKEY DGPKVDIWSL 251 300 ENSTTRP00000010998/1-1291 GVVLYVLVCG ALPFDGSTLQ NLRARVLSGK FRIPFFMSTE CEHLIRHMLV ENSP00000292055/1-1263 GVVLYVLVCG ALPFDGSTLQ NLRARVLSGK FRIPFFMSTE CEHLIRHMLV ENSBTAP00000020116/1-1304 GVVLYVLVCG ALPFDGSTLQ NLRARVLSGK FRIPFFMSTE CEHLIRHMLV bmy_18238T0/1-1294 ---------- ---------- ---------- ---------- -------MLV BACU017298/1-1187 GVVLYVLVCG ALPFDGSTLQ NLRARVLSGK FRIPFFMSTE CEHLIRHMLV 301 350 ENSTTRP00000010998/1-1291 LDPNKRLSME QICKHKWMKL GDADPSFDRL IAECQQLKEE RQMDPLNEDV ENSP00000292055/1-1263 LDPNKRLSME QICKHKWMKL GDADPNFDRL IAECQQLKEE RQVDPLNEDV ENSBTAP00000020116/1-1304 LDPNKRLSME QICKHKWMKL GDADPNFDRL IAECQQLKEE RQMDPLNEDV bmy_18238T0/1-1294 LDPNKRLSME QICKHKWMKL GDADPSFDRL IAECQQLKEE RQMDPLNEDV BACU017298/1-1187 LDPNKRLSME QICKHKWMKL GDADPSFDRL IAECQQLKEE RQMDPLNEDV 351 400 ENSTTRP00000010998/1-1291 LLAMEDMGLD KERTLQSLRS DAYDHYSAIY SLLCDRHKRH KTLRVGLPPS ENSP00000292055/1-1263 LLAMEDMGLD KEQTLQSLRS DAYDHYSAIY SLLCDRHKRH KTLRLGALPS ENSBTAP00000020116/1-1304 LLAMENMGLD KERTLQSLRS DAYDHYSAIY SLLCDRHKRH KTLRVGVPPG bmy_18238T0/1-1294 LLAMEDMGLD KERTLQSLRS DAYDHYSAIY SLLCDRHKRH KTLRVGVPPT BACU017298/1-1187 LLAMEDMGLD KERTLQSLRS DAYDHYSAIY SLLCDRHKRH KTLRVGVPPT 401 450 ENSTTRP00000010998/1-1291 MPRAVAFQAP VNIQ------ ---------- ---------- ---------- ENSP00000292055/1-1263 MPRALAFQAP VNIQ------ ---------- ---------- ---------- ENSBTAP00000020116/1-1304 MPRTMGFQPP VNLQ------ ---------- ---------- ---------- bmy_18238T0/1-1294 MPRAMTFQAP VNIQVGNNSS DQIRDKNSKS LRETVLSKEC FLVASKGRGT BACU017298/1-1187 MPRAMTFQAP VNIQ------ ---------- ---------- ---------- 451 500 ENSTTRP00000010998/1-1291 ----AEQAGT TMNISVPQVQ LINPENQIVE PDGTVNLDSD EGEEPSPEAL ENSP00000292055/1-1263 ----AEQAGT AMNISVPQVQ LINPENQIVE PDGTLNLDSD EGEEPSPEAL ENSBTAP00000020116/1-1304 ----AEQAGT TMNISVPQVQ LINPENQIVE PDGAVNVDSD EGEEPSPEAL bmy_18238T0/1-1294 KDSEAEQAGT TVNISVPQVQ LINPENQI-- PDGTVNLDSD EGEEPSPEAL BACU017298/1-1187 ----AEQAGT TVNISVPQVQ LINPENQIVE PDGTVNLDSD EGEEPSPEAL 501 550 ENSTTRP00000010998/1-1291 VRYLSMRRHT VGVADPRTEV MEDLQKLLPG FPGVNPQAPF LQVAPNMNFM ENSP00000292055/1-1263 VRYLSMRRHT VGVADPRTEV MEDLQKLLPG FPGVNPQAPF LQVAPNVNFM ENSBTAP00000020116/1-1304 VRYLSMRRHT VGVADPRTEV MEDLQKLLPG FPGVNPQAPF LQVAPNVNFM bmy_18238T0/1-1294 VRYLSMRRHT VGVADPRTEV MEDLQKLLPG FPGVNPQAPF LQVAPNMNFM BACU017298/1-1187 VRYLSMRRHT VGVADPRTEV MEDLQKLLPG FPGVNPQAPF LQVAPNMNFM 551 600 ENSTTRP00000010998/1-1291 HNLLPMQNLQ PAGQLEYKEQ SLLQPPTLQL LNGMGPLGRR ASDGGANIQL ENSP00000292055/1-1263 HNLLPMQNLQ PTGQLEYKEQ SLLQPPTLQL LNGMGPLGRR ASDGGANIQL ENSBTAP00000020116/1-1304 HNLLPMQNLQ PTGQLEYKEQ SLLQPPTLQL LNGMGPLGRR ASDGGANIQL bmy_18238T0/1-1294 HNLLPMQNLQ PAGQLEYKEQ SLLQPPTLQL LNGMGPLGRR ASDGGANIQL BACU017298/1-1187 HNLLPMQNLQ PAGQLEYKEQ SLLQPPTLQL LNGMGPLGRR ASDGGANIQL 601 650 ENSTTRP00000010998/1-1291 HAQQLLKRPR GPSPLVTMTP AVPAVTPVDE ESSDGEPDQE AVQS------ ENSP00000292055/1-1263 HAQQLLKRPR GPSPLVTMTP AVPAVTPVDE ESSDGEPDQE AVQS------ ENSBTAP00000020116/1-1304 HAQQLLKRPR GPSPLVTMTP AVPAVTPVDE ESSDGEPDQE AVQRYLANRS bmy_18238T0/1-1294 HAQQLLKRPR GPSPLVTMTP AVPAVTPVDE ESSDGEPDQE AVQRYLANRS BACU017298/1-1187 HAQQLLKRPR GPSPLVTMTP AVPAVTPVDE ESSDGEPDQE AVQRYLANRS 651 700 ENSTTRP00000010998/1-1291 ---------- ---------- ---------- ---------- ---------- ENSP00000292055/1-1263 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000020116/1-1304 KRHTLAMTNP TAEIPPDLQR QLGQQPFRSR VWPPHLVPDQ HR-------- bmy_18238T0/1-1294 KRHTLAMTNP TAEIPPDLQR QLGQQPFRSR VWPPHLVPDQ HRLGGCHCSE BACU017298/1-1187 KRHTLAMTNP TAEIPPDLQR QLGQQPFRSR VWPPHLVPDQ HR-------- 701 750 ENSTTRP00000010998/1-1291 ---------- ---------- ---------- ---------- ---------- ENSP00000292055/1-1263 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000020116/1-1304 ---------- ---------- ---------- ---------- ---------- bmy_18238T0/1-1294 KLTFPAGNLI CVDQHKTCEF QARPLTPQLT VVSLWSIVRR MLLRENFGSN BACU017298/1-1187 ---------- ---------- ---------- ---------- ---------- 751 800 ENSTTRP00000010998/1-1291 ---------- ---------- ---------- ---------- ---STYKDSN ENSP00000292055/1-1263 ---------- ---------- ---------- ---------- ---STYKDSN ENSBTAP00000020116/1-1304 ---------- ---------- ---------- ---------- ---STYKDSN bmy_18238T0/1-1294 GTLPGLDIKP TQGKWKWKTV TWRPLKGSRL GKRLASGDDV EVASTYKDSN BACU017298/1-1187 ---------- ---------- ---------- ---------- ---STYKDSN 801 850 ENSTTRP00000010998/1-1291 TLHLPTERFS PVRRFSDGAA SIQAFKAHLE KMGNNSXXXX XXXECEQLQK ENSP00000292055/1-1263 TLHLPTERFS PVRRFSDGAA SIQAFKAHLE KMGNNSSIKQ LQQECEQLQK ENSBTAP00000020116/1-1304 TLHLPTERFS PVRRFSDGAA SIQAFKAHLE KMGNNSSIKQ LQQECEQLQK bmy_18238T0/1-1294 TLHLPTERFS PVRRFSDGAA SIQAFKAHLE KMGNNSSIKQ LQQECEQLQK BACU017298/1-1187 TLHLPTERFS PVRRFSDGAA SIQAFKAHLE KMGNNSSIKQ LQQECEQLQK 851 900 ENSTTRP00000010998/1-1291 MYGGQIDERA LEKTQQQHML YQQEQHHQIL QQQIQDSICP PQPSPPLQAA ENSP00000292055/1-1263 MYGGQIDERT LEKTQQQHML YQQEQHHQIL QQQIQDSICP PQPSPPLQAA ENSBTAP00000020116/1-1304 MYGGQIDERT LEKTQQQHML YQQEQHHQIL QQQIQDSICP PQPSPPLQAA bmy_18238T0/1-1294 MYGGQIDERA LEKTQQQHML YQQEQHHQIL QQQIQDSICP PQPSPPLQAA BACU017298/1-1187 MYGGQIDERA LEKTQQQHML YQQEQHHQIL QQQIQDSICP PQPSPPLQAA 901 950 ENSTTRP00000010998/1-1291 CENQPALLTH QLQRLRIQPA SPPPSHASNH LFRPPSNSPP PMSSAMVQPH ENSP00000292055/1-1263 CENQPALLTH QLQRLRIQPS SPPPNHPNNH LFRQPSNSPP PMSSAMIQPH ENSBTAP00000020116/1-1304 CENQPALLTH QLQRLRIQPS SPPPNHPNNH LFRQPSNSPP PMSSAMMQSH bmy_18238T0/1-1294 CENQPALLTH QLQRLRIQPS SPPPSHPNNH LFRQPSNSPP PMSGAMIQPH BACU017298/1-1187 CENQPALLTH QLQRLRIQPS SPPPSHPNNH LFRQPSNSPP PMSGTMIQPH 951 1000 ENSTTRP00000010998/1-1291 GAASPSQFQG FPSRSAVFQQ QPENCSPPPS VALTCLGIQQ PPQSQQVTIQ ENSP00000292055/1-1263 GAASSSQFQG LPSRSAIFQQ QPENCSSPPN VALTCLGMQQ PAQSQQVTIQ ENSBTAP00000020116/1-1304 GATSSSQFQG FPSRSAIFQQ QPENCSPPPS VALTCLGIQQ PPQSQQVTIQ bmy_18238T0/1-1294 GAASPSQFQG FPSRSAVFQQ QPENCSPPPN VALTCLGIQQ PPQSQQVTIQ BACU017298/1-1187 GAASPSQFQG FPSRSAVFQQ QPENCSPPPN VALTCLGIQQ PPQSQQVTIQ 1001 1050 ENSTTRP00000010998/1-1291 VQEPVDMLSS MPGTAA-SAG RGVSISPSAS Q-QMQHRTSL MAAFSY-HRP ENSP00000292055/1-1263 VQEPVDMLSN MPGTAAGSSG RGISISPSAG QMQMQHRTNL MATLSYGHRP ENSBTAP00000020116/1-1304 VQEPVDMLSS MPGAAAASAG RGVSISPNTS QVQMQLRTSL MAALSYGHRP bmy_18238T0/1-1294 VQEPVDMLSS MPGTAAGSAG RGVSISPSAS QVQMQHRTNL MAAFSYGHRP BACU017298/1-1187 VQEPVDMLSS MPGTAAGSAG RGVSLSPSAS QVQMQHRTNL MAAFSYGHRP 1051 1100 ENSTTRP00000010998/1-1291 -SKQLS--DS ASHSLNVNRF SPANYDQAHL HPHLFSDQSR GSPSSYSPSA ENSP00000292055/1-1263 LSKQLSADSA EAHSLNVNRF SPANYDQAHL HPHLFSDQSR GSPSSYSPST ENSBTAP00000020116/1-1304 LSKQLSADSA EAHSLNVNRF SPANYDQAHL HPHLFSDQSR GSPSSYNPSS bmy_18238T0/1-1294 LSKQLSADSA EAHSLNVNRF SPANYDQAHL HPHLFSDQSR GSPSSYSPSA BACU017298/1-1187 LSKQLSADSA EAH------- ---------- ---------- ---------- 1101 1150 ENSTTRP00000010998/1-1291 GVGLPPTQAL KVPPLDQFPT FPPSAHQQPP HYTASALQQA LLSPTPPDYA ENSP00000292055/1-1263 GVGFSPTQAL KVPPLDQFPT FPPSAHQQPP HYTTSALQQA LLSPTPPDYT ENSBTAP00000020116/1-1304 GAGLPPTQAL KVPPLDQFPT FPPSAHQQPP HYTTSALQQA LLSPTPPDYT bmy_18238T0/1-1294 GVGLPPTQAL KVPPLDQFPT FPPSAHQQPP HYTASALQQA LLSPTPPDYA BACU017298/1-1187 ---------- ---------- ---SAHQQPP HYTASALQQA LLSPTPPDYA 1151 1200 ENSTTRP00000010998/1-1291 RHQQVPHILQ GLLSPRHSLT GHSDIRLPPA EFAQLIK--- --RQQRQQQQ ENSP00000292055/1-1263 RHQQVPHILQ GLLSPRHSLT GHSDIRLPPT EFAQLIKRQQ QQRQQQQQQQ ENSBTAP00000020116/1-1304 RHQQVPHILQ GLLSPRHSLT GHSDMRLPPA EFAQLIK--- --RRQR--QQ bmy_18238T0/1-1294 RHQQVPHILQ GLLSPRHSLT GHSDIRLPPA EFAQLIK--- --RQQRQQQQ BACU017298/1-1187 RHQQVPHILQ GLLSPRHSLT GHSDIRLPPA EFAQLIK--- --RQQR-QQQ 1201 1250 ENSTTRP00000010998/1-1291 QQQEYQELFR HMNQGDAGSL APGLGGQSMT ERQALPYQNA DSYHHHHTSP ENSP00000292055/1-1263 QQQEYQELFR HMNQGDAGSL APSLGGQSMT ERQALSYQNA DSY-HHHTSP ENSBTAP00000020116/1-1304 QQQEYQELFR HMNQGDAGSL APGLGGQSMT ERQALPYQNA DSYHHHHTSP bmy_18238T0/1-1294 QQQEYQELFR HMNQGDAGSL APGLGGQSMT ERQALPYQNA DSYHHHHTSP BACU017298/1-1187 QQQEYQELFR HMNQGDAGSL APGLGGQSMT ERQALPYQNA DSYHHHHTSP 1251 1300 ENSTTRP00000010998/1-1291 QHLLQIRAQE CISQVSSPTP THGYAHQPAL VHSESMEEEC SCEGAKDGFP ENSP00000292055/1-1263 QHLLQIRAQE CVSQASSPTP PHGYAHQPAL MHSESMEEDC SCEGAKDGFQ ENSBTAP00000020116/1-1304 QHLLQIRAQE CISQVSSPTP THSYAPQAAL VHSESMEEEC SCEGAKDGFP bmy_18238T0/1-1294 QHLLQIRAQE CISQVSSPTP THGYAHQPAL VHSESMEEEC SCEGAKDGFP BACU017298/1-1187 QHLLQIRAQE CILQVSSPTP THGYAHQPAL VHSESMEEEC SCEGAKDGFP 1301 1350 ENSTTRP00000010998/1-1291 DRKNVNTLTK GCHDGPLLLS TGGPGDPESL LGTVSHVQEL G--------- ENSP00000292055/1-1263 DSKSSSTLTK GCHDSPLLLS TGGPGDPESL LGTVSHAQEL G--------- ENSBTAP00000020116/1-1304 DRKSGNTLTK GCHDSPLLLS TGGPGDPESL LGTVNHAQEL G--------- bmy_18238T0/1-1294 DRKNVNTLTK GCHDGPLLLS TGGPGDPEC- -GNIALSNQQ RNEEKKKRFS BACU017298/1-1187 DRKNVNTLTK GCHDGPLLLS TGGPGDPESL LGTVSHVQEL G--------- 1351 1400 ENSTTRP00000010998/1-1291 -IHP------ ---Y-RQPAA AFNRNKVS-- ---SRXXXXX XXXXXXXXXX ENSP00000292055/1-1263 -IHP------ ---YGHQPTA AFSKNKVP-- ---SREPVIG NCMDRSSPGQ ENSBTAP00000020116/1-1304 -IHP------ ---Y-RQPAA AFTRNKVS-- ---SRESVLG KCMDRSSPGQ bmy_18238T0/1-1294 VIQPTTDTWN FFLL-RLPAL GETLGLLTLF CSVPSESVLG NCMDRSSPGQ BACU017298/1-1187 -IHP------ ---Y-RQPAA AFNRNKVS-- ---SRESVLG NCMDRSSPGQ 1401 1450 ENSTTRP00000010998/1-1291 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX VQLDNLPGMS ENSP00000292055/1-1263 AVELPDHNGL GYPARPSVHE HHRPRALQRH HTIQNSDDAY VQLDNLPGMS ENSBTAP00000020116/1-1304 AMELPDHNGL GYPAHPSVSE HQRPRTLQRH HTIQNSDDAY VQLDNLPGMS bmy_18238T0/1-1294 AMELPDHNGL GYPAHPSVSE HHRPRTLQRH HTIQNSDDAY VQLDNLPGMS BACU017298/1-1187 AMELPDHNGL GYPAHPLVSE HHRPRTLQRH HTIQNSDDAY VQLDNLPGMS 1451 1500 ENSTTRP00000010998/1-1291 LVAGKALSSA RMSDAVLSQS SLMGSQQFQD GENEECGESL GGHEHPDLTD ENSP00000292055/1-1263 LVAGKALSSA RMSDAVLSQS SLMGSQQFQD GENEECGASL GGHEHPDLSD ENSBTAP00000020116/1-1304 LVAGKALSSA RMSDAVLSQS SLMGSQQFQD GENEECGESL GGQEHPDLTD bmy_18238T0/1-1294 LVAGKALSSA RMSDAVLSQS SLMGSQQFQD GENEECGESL GGHEHPDLTD BACU017298/1-1187 LVAGKALSSA RMSDAVLSQS SLMGSQQFQD GENEECGESL GGHEHPDLTD 1501 1550 ENSTTRP00000010998/1-1291 GSQHLNASCY PSTCITDILL SYKHPEVSFS MEQAGV---- ---------- ENSP00000292055/1-1263 GSQHLNSSCY PSTCITDILL SYKHPEVSFS MEQAGV---- ---------- ENSBTAP00000020116/1-1304 GSQHLNSSCY PSTCITDILL SYKHPEVSFS MEQAGV---- ---------- bmy_18238T0/1-1294 GSQHLNSSCY PSTCITDILL SYKHPEVSFS MEQAGVYVPR GNEKVDFKPT BACU017298/1-1187 GSQHLNSSCY PSTCITDILL SYKHPEVSFS MEQAGV---- ---------- 1551 1600 ENSTTRP00000010998/1-1291 ---------- ---------- ---------- ---------- ---------- ENSP00000292055/1-1263 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000020116/1-1304 ---------- ---------- ---------- ---------- ---------- bmy_18238T0/1-1294 VSSSIAPSCP CVSLHPECRL LSSHLVHQRA VVLGSEGGFA TFACMTKSPR BACU017298/1-1187 ---------- ---------- ---------- ---------- ---------- 1601 1650 ENSTTRP00000010998/1-1291 - ENSP00000292055/1-1263 - ENSBTAP00000020116/1-1304 - bmy_18238T0/1-1294 K BACU017298/1-1187 -