KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:10:27 2014 Check: 00 .. Name: ENSP00000203556/1-970 Len: 1004 Check: 1673 Weight: 1.00 Name: ENSTTRP00000009380/1-965 Len: 1004 Check: 217 Weight: 1.00 Name: ENSBTAP00000020147/1-965 Len: 1004 Check: 4546 Weight: 1.00 Name: bmy_02667T0/1-869 Len: 1004 Check: 1432 Weight: 1.00 Name: BACU016622/1-927 Len: 1004 Check: 1158 Weight: 1.00 // 1 50 ENSP00000203556/1-970 MDAAEPGLPP GPEGRKRYSD IFRSLDNLEI SLGNVTLEML AGDPLLSEDP ENSTTRP00000009380/1-965 MDSTEPGLPS APESRKRYSD IFRSLDNLEI SLGNVTLEML AGDPVLSGDP ENSBTAP00000020147/1-965 MDSTEPGLPP PPESRKRYSD IFRSLDNLEI SLGNVTLEML AGDPVISGDP bmy_02667T0/1-869 ---------- ---------- ---------- ---------- ---------- BACU016622/1-927 ---------- ---------- ---------- --------ML AGDPVLSGDP 51 100 ENSP00000203556/1-970 EPDKTPTATV TNEASCWSGP SPEGPVPLTG EELDLRLIRT KGGVDAALEY ENSTTRP00000009380/1-965 EPDKTPTATL TSETNRWSGP SPEDPAPLTG EELDLRLIRT KGGVDAALEY ENSBTAP00000020147/1-965 EPDKNPTAAL TSETSRWSGP SPEDPAPLTG EELDLRLIRT KGGVDAALEY bmy_02667T0/1-869 ---------- ---------- ---------- ---------- ---------- BACU016622/1-927 EPDKTPTATL TSETNRWSGP SPEDPAPLTG EELDLRLIRT KGGVDAALEY 101 150 ENSP00000203556/1-970 AKTWSRYAKE LLAWTEKRAS YELEFAKSTM KIAEAGKVSI QQQSHMPLQY ENSTTRP00000009380/1-965 AKTWSRYAKE LLAWTEKRAS HELEFAKNIM KIAEAGKVSI HQQSHMPLQY ENSBTAP00000020147/1-965 AKTWSRYVKD LLAWTEKRAS YELEFAKNIM KIAEAGKVSI QQQSQMSLQY bmy_02667T0/1-869 ---------- ---------- ---------M KIAEAGKVSI HQQSHMPLQY BACU016622/1-927 AKTWSRYAKE LLAWTEKRAS HELEFAKNIM KIAEAGKVSI HQQSHMPLQY 151 200 ENSP00000203556/1-970 IYTLFLEHDL SLGTLAMETV AQQKRDYYQP LAAKRTEIEK WRKEFKEQWM ENSTTRP00000009380/1-965 IYTLFLEHDL SLGALAMETV AQQKRDYYQP LAAKRTEIEK WRKEFKEQWM ENSBTAP00000020147/1-965 IYLLFLEHDL SLGNLAMETL AQQKRDYYQP LAAKRTEIEK WRKEFKEQWM bmy_02667T0/1-869 IYTLFLEHDL SLGALAMETV AQQKRDYYQP LAAKRTEIEK WRKEFKEQWI BACU016622/1-927 IYTLFLEHDL SLGALAMETV AQQKRDYYQP LAAKRTEIEK WRKEFKEQWM 201 250 ENSP00000203556/1-970 KEQKRMNEAV QALRRAQLQY VQRSEDLRAR SQGSPEDSAP QASPGPSKQQ ENSTTRP00000009380/1-965 KEQKRMXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000020147/1-965 KEQKRMNEAV QALRRAQLQY TQRSEELRVR SQVSPEDLAL QASPGPNKQQ bmy_02667T0/1-869 KEQKRMNEAV QALRRAQLQY VQRSEDLRVR SQASPEDPAP QAQPGPNKQQ BACU016622/1-927 KEQKRMNEAV QALRRAQLQY AQRSEDLRVR SQASPEDPAP QAQPGPNKQQ 251 300 ENSP00000203556/1-970 ERRRRSREEA QAKAQEAEAL YQACVREANA RQQDLEIAKQ RIVSHVRKLV ENSTTRP00000009380/1-965 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000020147/1-965 ERRRRSREEA QAKAQEAEAL YQACVREANA RQQELEAAKQ RIVSHVRKLV bmy_02667T0/1-869 ERRRRSREEA QAKAQEAEAL YQACVREANV RQQDLEAAKQ RIVSHVRKLV BACU016622/1-927 ERRRRSREEA QAKAQEAEAL YQACVREANV RQQDLEAAKQ RIVSHVRKLV 301 350 ENSP00000203556/1-970 FQGDEVLRRV TLSLFGLRGA QAERGPRAFA ALAECCAPFE PGQRYQEFVR ENSTTRP00000009380/1-965 XXXXXXXXXV TLGLFGLRGA QAERGPRAFA ALAECCAPFE PGQRYQEFVR ENSBTAP00000020147/1-965 LQGDEVLRRV TLGLFGLRGA QAEHGPRAFA ALAECCAPFE PGQRYQEFVR bmy_02667T0/1-869 LQGDEVLRRV TLGLFGLRGA QAERGPRAFA ALAECCAPFE PGQRYQEFVR BACU016622/1-927 LQGDEVLRRV TLGLFGLRGA QAERGPRAFA ALAECCAPFE PGQRYQEFVR 351 400 ENSP00000203556/1-970 ALRPEAPPPP PPAFSFQEFL PSLNSSPLDI RKKLSGPLPP RLDENSAEPG ENSTTRP00000009380/1-965 ALRPDAPPPL PPAFSFQEF- --THGSPLDT RKKLSGAPPP PLDESAAEPG ENSBTAP00000020147/1-965 AIRPHSPPPP PPAYSFQEF- --THSSPLDT RKKLSGAPPP QLDESAAEPG bmy_02667T0/1-869 ALRPDAPPPL PPAFSFQEF- --THSSPLDT RKKLSGAPPP PLDESAAEPG BACU016622/1-927 ALRPDAPPPP PPAFSFQEF- --THSSPLDT RKKLSGAPPP PLDESAAEPG 401 450 ENSP00000203556/1-970 PWEDPGTGWR WQGTPGPTPG SDVDSVGGGS ESRSLDSPTS SPGAGTRQLV ENSTTRP00000009380/1-965 PWEDTGTG-- WQGTLGPTLA SDVDSMGGGS ESRSQDSPTS SPGSGTRRLV ENSBTAP00000020147/1-965 PWEDTGTG-- CQGAPGPTVG SDVDSVGGSS ESRSQDSPTS SPGSGTRRLV bmy_02667T0/1-869 PWEDTGTG-- WQGTLGPTLA SDVDSMGGGS ESRSQDSPTS SPGSGTRRLV BACU016622/1-927 PWEDTGTG-- WQGTLGPTLA SDVDSMGGGS ESRSQDSPTS SPGSGTRRLV 451 500 ENSP00000203556/1-970 KASSTGTESS DDFEERDPDL GDGLENGLGS PFGKWTLSSA AQTHQLRRLR ENSTTRP00000009380/1-965 KVSSTGTESS DDLEERDPDL GDGLENGPGT PFKKWTLSNA AQTHRLRRLR ENSBTAP00000020147/1-965 KVSSIGTESS DDFEERDPDL GDGLENGPGT PFKKWILSNA AQTHRLRRLR bmy_02667T0/1-869 KVSSTGTESS DDFEERDPDL GDGLENGPGT PFKKWTLSNA AQTHRLRRLR BACU016622/1-927 KVSSIGTESS DDFEERDPDL GDGLENGPGT PFKKWTLSNA AQTHRLRRLR 501 550 ENSP00000203556/1-970 GPAKCRECEA FMVSGTECEE CFLTCHKRCL ETLLILCGHR RLPARTPLFG ENSTTRP00000009380/1-965 GPAKCRECEA FMVSGTECEE CFLTCHKRCL ETLLILCGHK RLPARTPLFG ENSBTAP00000020147/1-965 GPAKCRECEA FMVSGTECEE CFLACHKRCL ETLLILCGHK RLPARTPLFG bmy_02667T0/1-869 GPAKCRECEA FMVSGTECEE CFLTCHKRCL ETLLILCGHK RLPARTPLFG BACU016622/1-927 GPAKCRECEA FMVSGTECEE CFLTCHKRCL ETLLILCGHK RLPARTPLFG 551 600 ENSP00000203556/1-970 VDFLQLPRDF PEEVPFVVTK CTAEIEHRAL DVQGIYRVSG SRVRVERLCQ ENSTTRP00000009380/1-965 VNFLQLPRDF PEEVPLVITR CTTEIEQRAL SVQGIYRVSG SRVRVERLCQ ENSBTAP00000020147/1-965 VSFLQLPRDF PEEVPFVITR CTAEIEQRAL HVQGIYRVSG SRVRVERLCQ bmy_02667T0/1-869 VNFLQLPRDF PEEVPLVITR CTTEIEQRAL SVQGIYRVSG SRVRVERLCQ BACU016622/1-927 VNFLQLPRDF PEEVPLVITR CTTEIEQRAL SVQGIYRVSG SRVRVERLCQ 601 650 ENSP00000203556/1-970 AFENGRALVE LSGNSPHDVS SVLKRFLQE- ---------- ---------- ENSTTRP00000009380/1-965 AFENGRALVD LSGNSPHDVS SVLKRFLQE- ---------- ---------- ENSBTAP00000020147/1-965 AFENGRALVD LSGNSPHDVS SVLKRFLQE- ---------- ---------- bmy_02667T0/1-869 AFENGRALVD LSGNSPHDVS SVLKRFLQEV GAQQLRSQRP GGLRLRTLCS BACU016622/1-927 AFENGRALVD LSGNSPHDVS SVLKRFLQE- ---------- ---------- 651 700 ENSP00000203556/1-970 ---------- ---LTEPVIP FHLYDAFISL AKTLHADPGD DPGTPSPSPE ENSTTRP00000009380/1-965 ---------- ---LTDPVVP FHLYDAFISL AKTLHADPGH DPGTPSPSPE ENSBTAP00000020147/1-965 ---------- ---LTDPVVP FHLYDAFISL AKTLHADPVH DPGTPSPSPE bmy_02667T0/1-869 PPTPMSPLPF HPQLTDPVVP FHLYDAFISL AKTLHADPGH DPGTPSPSPE BACU016622/1-927 ---------- ---LTDPVVP FHLYDAFISL AKTLHADPGH DPGTPSPSPE 701 750 ENSP00000203556/1-970 VIRSLKTLLV QLPDSNYNTL RHLVAHLFRV AARFMENKMS ANNLGIVFGP ENSTTRP00000009380/1-965 VIRSLKNLLV QLPDSNYNTL RHLVAHLFRV AAQYEENKMS ANNLGIVFGP ENSBTAP00000020147/1-965 VIRSLKTLLV QLPDSNYSTL RHLVAHLFRV AAQFEDNKMS ANNLGIVFGP bmy_02667T0/1-869 VIRSLKTLLV QLPDSNYNTL RHLVAHLFRV AAQYEENKMS ANNLGIVFGP BACU016622/1-927 VIRSLKTLLV QLPDSNYNTL RHLVAHLFRV AAQYEENKMS ANNLGIVFGP 751 800 ENSP00000203556/1-970 TLLRPPDGPR AASAIPVTCL LDSGHQAQLV EFLIVHYEQI FGMDELPQAT ENSTTRP00000009380/1-965 TLLRLPDGPG VASAGPVTCL LDSVHQAQLI EFLIVHYEQI FGVDDLFLAT ENSBTAP00000020147/1-965 TLLRLPDGPG PAGAGPVTCL LDSAHQAQLV EFLIVHYEQI FGPDELLLAT bmy_02667T0/1-869 TLLRLPDGPG VASAGPVTCL LDSVHQAQLI EFLIVHYEQI FGIDDLLLAT BACU016622/1-927 TLLRLPDGPG VASAGPVTCL LDSVHQAQLI EFLIVHYEQI FGIDDLLLAT 801 850 ENSP00000203556/1-970 EPPPQDSSPA PGPLTTSSQP PPPHLDPDSQ PPVLASDPGP DPQHHSTLEQ ENSTTRP00000009380/1-965 EPLPRDPSPP PTTLPTSPQP PYSQPALDAL PISLASDPNP DTMPLSALEK ENSBTAP00000020147/1-965 EPLPRDPSPP PATLPASLQP PHLQLVLDPL PLSLASDRDP DAMLLGALEK bmy_02667T0/1-869 EPLPRDPSPP PTTLPTSPQP PHSQPALDAL PISLASDPNP DTMPLSALEK BACU016622/1-927 EPLPRDPSPP PTTLPTSPQP PHSQPALDAL PIFLASDPNP DTMPLSALEK 851 900 ENSP00000203556/1-970 HPTATPTEIP TPQSDQREDV AEDTKDGGGE VSSQGPEDSL LGTQSRGHFS ENSTTRP00000009380/1-965 HPETTPTEIP TLQRDQEEEV TKDTKNEGEE VSSQGPEDSP LGTQSRGHFS ENSBTAP00000020147/1-965 HPEATLPEIS TLQSEQEEEI TEDIKNEGGE VSSQGSEDSP LGTQPRGHFS bmy_02667T0/1-869 HPETTPTEIP TLQRDQEEEV TKDTKNEGEE VSSQGPEDSP LGTQSRGHFS BACU016622/1-927 HPETTPTEIP TLQRDQEEEV TKDTKNEGEE VSSQGPEDSP LGTQSRGHFS 901 950 ENSP00000203556/1-970 RQPVKYPRGG VRPVTHQLSS LALVASKLCE ETPITSVPRG SLRGRGPSPA ENSTTRP00000009380/1-965 RQPVKYPRGG VRPVTHQLSC LAMVASKLCE ETPVTSVPQG SLRRPRPGPA ENSBTAP00000020147/1-965 RQPVKYPRGG VRPVTHQLSG LALVASKLSE ETSVTSVPQG SLQRRGPSPA bmy_02667T0/1-869 RQPVKYPRGG VRPVTHQLSC LALVASKLCE ETPVTSVPQG SLRRPRPGPA BACU016622/1-927 RQPVKYPRGG VRPVTHQLSC LALVASKLCE ETPVTSVPQG SLRRPRPGPA 951 1000 ENSP00000203556/1-970 AASPEGSPLR RTPLPKHFEI TQETARLLSK LDSEAVPRAT CCPDVQPEEA ENSTTRP00000009380/1-965 ATSREGSPLR RTPLPKHFEI TQETARLLSK LHNESVPKAT CCPGTQPEEA ENSBTAP00000020147/1-965 ATIREDSPLR RTPLPKHFEI TQETARLLSK LHSESVPTAT CCPDPQTEEA bmy_02667T0/1-869 ATSREGSPLR RTPLPKHFEI TQETARLLSK LH-ESVPKAT CCPGTQPEEA BACU016622/1-927 ATSREGSPLR RTPLPKHFEI TQETARLLSK LHNESVPKAT CCPGTQPEEA 1001 1050 ENSP00000203556/1-970 EDHL ENSTTRP00000009380/1-965 EDHF ENSBTAP00000020147/1-965 EDRL bmy_02667T0/1-869 EDHF BACU016622/1-927 EDHF